View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14429_high_8 (Length: 315)
Name: NF14429_high_8
Description: NF14429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14429_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 3300400 - 3300681
Alignment:
| Q |
22 |
attattagaaagttttcaaccttttgtttttctcattataaatacccattgaggaaaattcttaaagattataactaactttccttcttttttggccaag |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3300400 |
attattagaaagttttcaaccttttgtttttctcattataaatacccattgaggaaaattcttaaagattataac----tttccttcttttttggccaag |
3300495 |
T |
|
| Q |
122 |
tttcaagctttgtgaaaatgggtttgttagagaatttggaatgggtgaatgtttatggaaagaagcgttgtaggagcttgttttggaggatgagggctac |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3300496 |
tttcaagctttgtgaaaatgggtttgttggagaatttggaatgggtgaatgtttatggaaagaagcgttgtaggagcttgttttggaggatgagggctac |
3300595 |
T |
|
| Q |
222 |
attgaagagggctttgaggaatggaaataagcagaggcaaaagtttcattatgatgcttcaagttatgcacttaactttgatgatg |
307 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
3300596 |
attgaagagggctttgaggaatgggaataagcagaggcaaaagtttcattatgatccttcaagttatgcacttaactttgatgatg |
3300681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University