View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14429_low_1 (Length: 886)

Name: NF14429_low_1
Description: NF14429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14429_low_1
NF14429_low_1
[»] chr5 (5 HSPs)
chr5 (1-528)||(28532508-28533029)
chr5 (526-644)||(28533069-28533187)
chr5 (64-119)||(29021558-29021613)
chr5 (67-120)||(28673512-28673565)
chr5 (314-359)||(41900503-41900548)
[»] chr6 (14 HSPs)
chr6 (1-175)||(6588466-6588637)
chr6 (62-173)||(6416827-6416938)
chr6 (528-602)||(6587982-6588056)
chr6 (312-370)||(6593929-6593987)
chr6 (400-497)||(6588144-6588241)
chr6 (314-370)||(6423907-6423963)
chr6 (316-369)||(6410699-6410752)
chr6 (612-658)||(14810035-14810081)
chr6 (316-370)||(19633104-19633158)
chr6 (312-369)||(6417092-6417149)
chr6 (313-362)||(6596241-6596290)
chr6 (330-371)||(7132323-7132364)
chr6 (330-371)||(7135246-7135287)
chr6 (330-371)||(7138169-7138210)
[»] chr3 (6 HSPs)
chr3 (62-173)||(13469859-13469970)
chr3 (534-644)||(51763081-51763191)
chr3 (312-370)||(51763388-51763446)
chr3 (62-184)||(51763574-51763696)
chr3 (313-370)||(51113195-51113252)
chr3 (67-112)||(513925-513970)
[»] chr1 (3 HSPs)
chr1 (73-184)||(19467621-19467732)
chr1 (312-376)||(7555198-7555262)
chr1 (314-371)||(19467428-19467485)
[»] chr4 (7 HSPs)
chr4 (73-173)||(21833493-21833593)
chr4 (312-371)||(553759-553818)
chr4 (611-658)||(1537252-1537299)
chr4 (312-367)||(21833278-21833333)
chr4 (565-662)||(53759964-53760058)
chr4 (606-658)||(1547374-1547426)
chr4 (62-160)||(53761012-53761110)
[»] chr7 (5 HSPs)
chr7 (73-167)||(10615459-10615553)
chr7 (312-371)||(10615713-10615772)
chr7 (609-658)||(15091285-15091334)
chr7 (311-371)||(10169047-10169107)
chr7 (311-371)||(10176572-10176632)
[»] chr8 (2 HSPs)
chr8 (313-357)||(32151969-32152013)
chr8 (67-120)||(18314876-18314929)


Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Original strand, 28532508 - 28533029
Alignment:
Q  1 ctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtgga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532508 ctctcacggagagcagaagcaatgcctgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtgga 28532607  T
Q  101 aaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccattgttataactacgagt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  28532608 aaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccattgttataactacgagt 28532707  T
Q  201 ccgagtctctatcatagagatataatttaaggggtatttaagtatgaggtcgaggtcgagttcatcgagcaaagggaaacattctgcgataagaaatagg 300  Q
     |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||      ||||||||||||||||||||||||||||||||||||    
T  28532708 tcgagtctctatcatagagatataatttaaggggtattttagtctgaggtcgaggtcg------tcgagcaaagggaaacattctgcgataagaaatagg 28532801  T
Q  301 ttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttacaaacgtttgggagtt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  28532802 ttaacaaagccggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctgggaagcggttaccaacgtttggaagtt 28532901  T
Q  401 tgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttatgaccgagatagcgagagagattgtgggaattgagatg 500  Q
    |||||||| ||| |||||| |||| ||||   ||||||||||||||||||||||||||||| | ||| |||||||||||||||| | || ||||||||||    
T  28532902 tgagtgaaatgattttgaatgacgggaaatctgagatttggcagagaaggtcgtcgaggttgttacctagatagcgagagagatcgaggaaattgagatg 28533001  T
Q  501 ggtgaaccttttgaagaggctacgtagg 528  Q
    |||||||||||||||||||||| |||||    
T  28533002 ggtgaaccttttgaagaggctaagtagg 28533029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 526 - 644
Target Start/End: Original strand, 28533069 - 28533187
Alignment:
Q  526 aggcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 625  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  28533069 aggcgtccggtgatggagaggaaccgtttggatacggtggagagagaactcaagttgcgacggttgttgttttcgtccataccgtcgttgatgatgaatc 28533168  T
Q  626 tgaatatacattcccaaca 644  Q
    |||| ||||||||||||||    
T  28533169 tgaagatacattcccaaca 28533187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  64 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 119  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  67 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 120  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 359
Target Start/End: Complemental strand, 41900548 - 41900503
Alignment:
Q  314 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcg 359  Q
    ||||||||| |||||||||||||||||| ||||  |||||||||||    
T  41900548 aacaagtgagagaggtcaaagttgtaatctttttggaaaaagctcg 41900503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 81; Significance: 1e-37; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 6588637 - 6588466
Alignment:
Q  1 ctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtgga 100  Q
    |||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||| ||| ||||||||||||    
T  6588637 ctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttacaattgttgaacaagtgga 6588541  T
Q  101 aaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 175  Q
    |||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588540 aaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  62 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 161  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  162 aagtgagagagc 173  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 528 - 602
Target Start/End: Complemental strand, 6588056 - 6587982
Alignment:
Q  528 gcggccggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtc 602  Q
    |||| ||||||||| ||||||| | |||||||||| |||||||||| ||| |||| |||||||||||||||||||    
T  6588056 gcggtcggtgatggcgaggaactgcttggatacggcggagagagaaatcatgctgtgacggttgttgttttcgtc 6587982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 6593987 - 6593929
Alignment:
Q  312 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 370  Q
    ||||||| |||||||||||||||||||||| |||||||| ||| ||||||| |||||||    
T  6593987 ggaacaattgaaagaggtcaaagttgtaatcttttgtgagaaaactcgcaaaccatttg 6593929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 400 - 497
Target Start/End: Complemental strand, 6588241 - 6588144
Alignment:
Q  400 ttgagtgaagtgaatttgaacgacgagaaacgagagatttggcagagaaggtcgtcgaggttatgaccgagatagcgagagagattgtgggaattgag 497  Q
    ||||||||||||| ||| || |  | |||||||||||||||||| |||||||||||||||| || ||||  ||| || ||||||||| ||||| ||||    
T  6588241 ttgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtcataaccgctatatcgcgagagattgagggaagtgag 6588144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 6423907 - 6423963
Alignment:
Q  314 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 370  Q
    ||||||||| ||||||||||||||| |||||||| || ||||||||||| |||||||    
T  6423907 aacaagtgagagaggtcaaagttgttatgttttgggagaaagctcgcaacccatttg 6423963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 316 - 369
Target Start/End: Original strand, 6410699 - 6410752
Alignment:
Q  316 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 369  Q
    |||||||||||||||||||||||||||||||| || ||| || |||| ||||||    
T  6410699 caagtgaaagaggtcaaagttgtaatgttttgggagaaaacttgcaacccattt 6410752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 612 - 658
Target Start/End: Original strand, 14810035 - 14810081
Alignment:
Q  612 gttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 658  Q
    ||||||||||||||| || | || |||||||||||||||||||||||    
T  14810035 gttgatgatgaatctaaagacacgttcccaacactcatcaggtaaat 14810081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 316 - 370
Target Start/End: Original strand, 19633104 - 19633158
Alignment:
Q  316 caagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 370  Q
    ||||||| ||||||||||||||||||| |||  || ||||||||||| |||||||    
T  19633104 caagtgagagaggtcaaagttgtaatgctttcggagaaagctcgcaacccatttg 19633158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 6417092 - 6417149
Alignment:
Q  312 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccattt 369  Q
    ||||||||||| |||||||||||||||| | ||||| || |||||||| || ||||||    
T  6417092 ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccattt 6417149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 6596290 - 6596241
Alignment:
Q  313 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaa 362  Q
    |||||||||| ||||||||||||||| |||||||| || ||| |||||||    
T  6596290 gaacaagtgagagaggtcaaagttgttatgttttgggagaaaactcgcaa 6596241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 7132323 - 7132364
Alignment:
Q  330 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7132323 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7132364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 7135246 - 7135287
Alignment:
Q  330 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7135287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 371
Target Start/End: Original strand, 7138169 - 7138210
Alignment:
Q  330 caaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    |||||||||||||||||| || ||||||||||| ||||||||    
T  7138169 caaagttgtaatgttttgggagaaagctcgcaacccatttgc 7138210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 1e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 62 - 173
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  62 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 161  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  162 aagtgagagagc 173  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 534 - 644
Target Start/End: Complemental strand, 51763191 - 51763081
Alignment:
Q  534 ggtgatggagaggaaccgtttggatacggtggagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatata 633  Q
    |||||||||||||||| ||||||| ||| ||||||||||| ||||| ||||||||||||| | ||||||   | | | ||||||||||||| |||| |||    
T  51763191 ggtgatggagaggaactgtttggaaacgatggagagagaattcaagttgcgacggttgttttcttcgtcatcatcattgttgatgatgaatttgaagata 51763092  T
Q  634 cattcccaaca 644  Q
     ||||||||||    
T  51763091 gattcccaaca 51763081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 312 - 370
Target Start/End: Complemental strand, 51763446 - 51763388
Alignment:
Q  312 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 370  Q
    ||||||||||| ||| |||||||||||||| |||||||||||| ||||||| |||||||    
T  51763446 ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccatttg 51763388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  62 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 161  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  162 aagtgagagagcctctatcccat 184  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 51113252 - 51113195
Alignment:
Q  313 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttg 370  Q
    |||||||||| |||||||| ||||||||| ||||  || |||||||||||||||||||    
T  51113252 gaacaagtgagagaggtcagagttgtaatattttccgagaaagctcgcaatccatttg 51113195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  67 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 112  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 73 - 184
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  73 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 172  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  173 cctctatcccat 184  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 312 - 376
Target Start/End: Original strand, 7555198 - 7555262
Alignment:
Q  312 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgctggga 376  Q
    |||||||||||  ||||| ||||||||||| ||||| || ||||||||||||||| |||| ||||    
T  7555198 ggaacaagtgagtgaggttaaagttgtaatattttgggagaaagctcgcaatccaattgcaggga 7555262  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 19467485 - 19467428
Alignment:
Q  314 aacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    ||||||||| |||||||||||||||||| ||||| |  ||| ||||||| ||||||||    
T  19467485 aacaagtgagagaggtcaaagttgtaatattttgagtgaaaactcgcaacccatttgc 19467428  T

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Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 73 - 173
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  73 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 172  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  173 c 173  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 553759 - 553818
Alignment:
Q  312 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    |||||| |||| |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  553759 ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgc 553818  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 611 - 658
Target Start/End: Complemental strand, 1537299 - 1537252
Alignment:
Q  611 cgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 658  Q
    ||||| ||| ||||||||||| ||||||||||||||||||||||||||    
T  1537299 cgttgttgaggaatctgaatacacattcccaacactcatcaggtaaat 1537252  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 312 - 367
Target Start/End: Complemental strand, 21833333 - 21833278
Alignment:
Q  312 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccat 367  Q
    ||||||||||| |||||||||||| ||||||||||||| |||| ||||||| ||||    
T  21833333 ggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccat 21833278  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 565 - 662
Target Start/End: Complemental strand, 53760058 - 53759964
Alignment:
Q  565 gagagagaactcaagctgcgacggttgttgttttcgtccataccgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaatctga 662  Q
    ||||||||| ||||| || ||||||||||||||| |||| |   || |||||||| || | |||| ||| ||||||| ||||||||||||||||||||    
T  53760058 gagagagaattcaagttgtgacggttgttgtttttgtcctt---gttgttgatgacgagtttgaagatagattcccagcactcatcaggtaaatctga 53759964  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 606 - 658
Target Start/End: Complemental strand, 1547426 - 1547374
Alignment:
Q  606 accgtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 658  Q
    ||||||| ||||||||||| |||| ||| ||||||||||||| ||||||||||    
T  1547426 accgtcgatgatgatgaatttgaagatagattcccaacactcgtcaggtaaat 1547374  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  62 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 160  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  73 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 167  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 10615713 - 10615772
Alignment:
Q  312 ggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||||| || ||||||||    
T  10615713 ggaacaagtgagagaggtcaaagttgtaatcttttgggagaaagctcgtaacccatttgc 10615772  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 609 - 658
Target Start/End: Complemental strand, 15091334 - 15091285
Alignment:
Q  609 gtcgttgatgatgaatctgaatatacattcccaacactcatcaggtaaat 658  Q
    ||||||||||||||||||||| |  ||||||||||||||||| |||||||    
T  15091334 gtcgttgatgatgaatctgaagacgcattcccaacactcatcgggtaaat 15091285  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 10169107 - 10169047
Alignment:
Q  311 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10169107 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10169047  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 10176632 - 10176572
Alignment:
Q  311 cggaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagctcgcaatccatttgc 371  Q
    |||||||||||| ||||||||||||| |||| ||||| || ||| ||||||| ||||||||    
T  10176632 cggaacaagtgagagaggtcaaagttctaatattttgagagaaaactcgcaacccatttgc 10176572  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 313 - 357
Target Start/End: Original strand, 32151969 - 32152013
Alignment:
Q  313 gaacaagtgaaagaggtcaaagttgtaatgttttgtgaaaaagct 357  Q
    |||||||||| |||||||||||||||||||||||| || ||||||    
T  32151969 gaacaagtgagagaggtcaaagttgtaatgttttgggagaaagct 32152013  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  67 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 120  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

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