View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14429_low_10 (Length: 288)
Name: NF14429_low_10
Description: NF14429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14429_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 37071586 - 37071327
Alignment:
| Q |
13 |
gtgagaagaagagaattggcggggataagattttcaaagcttgtgagctctacaagatcggggattcatcgtcgaagtggtgttatgaaattgtgtttct |
112 |
Q |
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| T |
37071586 |
gtgacaagaagagaattggcggggataagattttcaaagcttgtgagctctacaagatcggggattcatcgtcgaagtggtgttatgaaattgtgtttct |
37071487 |
T |
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| Q |
113 |
taatgttaaccatgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgtt |
212 |
Q |
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| T |
37071486 |
taatgttaaccatgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgtt |
37071387 |
T |
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| Q |
213 |
gctaccccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggtaat |
272 |
Q |
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| T |
37071386 |
gctaccccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggtaat |
37071327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 37081427 - 37081168
Alignment:
| Q |
13 |
gtgagaagaagagaattggcggggataagattttcaaagcttgtgagctctacaagatcggggattcatcgtcgaagtggtgttatgaaattgtgtttct |
112 |
Q |
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| T |
37081427 |
gtgacaagaagagaattggtggggataagattttcaaagcttgtgagctctataaaatcggggattcatcgtcaaagtggtgttatgaaattgcattagt |
37081328 |
T |
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| Q |
113 |
taatgttaaccatgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgtt |
212 |
Q |
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| T |
37081327 |
taatgttaaccatgcaaaacaatcaatactttaccttgcagttgaaaatggggacaaggaagcagtcaaagtaatcatggcgaatcgccccaacaatgtt |
37081228 |
T |
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| Q |
213 |
gctaccccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggtaat |
272 |
Q |
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| T |
37081227 |
gctaagccagaaggattatcacccgttgtagcagcaatcatgaagcagaatcaaggtaat |
37081168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 270
Target Start/End: Original strand, 36946773 - 36946919
Alignment:
| Q |
124 |
atgcaaaacaatcagtactttaccttgctgttgatagcaaggacaaggaagcagtcgaagtaatcatggagaactgccccagctatgttgctaccccaaa |
223 |
Q |
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| T |
36946773 |
atgcaaagaaatcagtactttaccttgcggttgaaaatggggacgaggatgcagtcaaactaatcttagagaattgccctaagaatgatgctaagccgaa |
36946872 |
T |
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| Q |
224 |
gggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggta |
270 |
Q |
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| T |
36946873 |
gggattatcgcccattgtagcagcaatcatgaaacagaatcaaggta |
36946919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 36963987 - 36964035
Alignment:
| Q |
21 |
aagagaattggcggggataagattttcaaagcttgtgagctctacaaga |
69 |
Q |
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| T |
36963987 |
aagagaattggcggggacaagattttcaaagtttgtgaactttacaaga |
36964035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 219 - 270
Target Start/End: Original strand, 36952779 - 36952830
Alignment:
| Q |
219 |
ccaaagggattatcgcccgtcgtagcagcaatcatgaagcggaatcaaggta |
270 |
Q |
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| T |
36952779 |
ccaaaggggttatcacctgttgtagcagcaatcttgaagcggaatcaaggta |
36952830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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