View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14429_low_14 (Length: 239)
Name: NF14429_low_14
Description: NF14429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14429_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 51146391 - 51146592
Alignment:
| Q |
16 |
atgaagaggtcagagcaaaatgatgcaaatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51146391 |
atgaagaggtcagagcaaaatgatgcaaatgacaaaaacaagccaaacagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
51146490 |
T |
|
| Q |
116 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatggggg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51146491 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatggggg |
51146590 |
T |
|
| Q |
216 |
ac |
217 |
Q |
| |
|
|| |
|
|
| T |
51146591 |
ac |
51146592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 205
Target Start/End: Original strand, 51157530 - 51157719
Alignment:
| Q |
16 |
atgaagaggtcagagcaaaatgatgcaaatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
115 |
Q |
| |
|
|||||| | ||||| || |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51157530 |
atgaagggttcagaacagaatgatgcaaatgataaaaacaagtcaaacagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
51157629 |
T |
|
| Q |
116 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactg |
205 |
Q |
| |
|
| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
51157630 |
ctataagccaagggtcatctggaaacagcggtcgtcactctttctcagcatcatatgttgcacccgcaacagatggcttcttagaaactg |
51157719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 29936640 - 29936439
Alignment:
| Q |
16 |
atgaagaggtcagagcaaaatgatgcaaatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagat |
115 |
Q |
| |
|
|||||| ||||||| ||||||| ||| |||||| ||| || |||| ||||||| ||| |||| || || ||| ||| | | |||||| |||| ||||| |
|
|
| T |
29936640 |
atgaaggggtcagaacaaaatgttgccaatgactcaaataaatcaaacagtataatgctatctgaaaaacgatcaagtgaaatatctttatcctcaagat |
29936541 |
T |
|
| Q |
116 |
caataagccaagggtcagctggaaacagcggtcgtcactctttctcagcatcttatgttgcacccacaacagatggattcttagaaactgaagatggggg |
215 |
Q |
| |
|
||||| |||| |||| |||||||||| |||||||||||||| |||||||| | || |||||||||||||||||| |||||||| |||| |||||| || |
|
|
| T |
29936540 |
tcataaggcaagtgtcatctggaaacagtggtcgtcactctttttcagcatcatgtggtgcacccacaacagatggcttcttagagactgcagatggtgg |
29936441 |
T |
|
| Q |
216 |
ac |
217 |
Q |
| |
|
|| |
|
|
| T |
29936440 |
ac |
29936439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 51200342 - 51200472
Alignment:
| Q |
43 |
aatgacgaaaacaagtcaatcagtatagtgcattctggaagacaatcgagtcagagatctttttccttaagatcaataagccaagggtcagctgga---- |
138 |
Q |
| |
|
|||||| |||||||||||| ||||||||||| |||| ||||| ||||||||| |||||| | |||| ||| || ||||||||| |||| ||||| |
|
|
| T |
51200342 |
aatgacaaaaacaagtcaaacagtatagtgctatctgaaagacgatcgagtcaaagatctctctcctcaaggtctttaagccaagtgtcatctggaggtg |
51200441 |
T |
|
| Q |
139 |
--aacagcggtcgtcactctttctcagcatc |
167 |
Q |
| |
|
||||||||||||||||| ||||||||||| |
|
|
| T |
51200442 |
ggaacagcggtcgtcactcattctcagcatc |
51200472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University