View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14429_low_2 (Length: 792)
Name: NF14429_low_2
Description: NF14429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14429_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 710; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 710; E-Value: 0
Query Start/End: Original strand, 11 - 778
Target Start/End: Original strand, 32403662 - 32404429
Alignment:
| Q |
11 |
agtgagaagaatagtaggagcaaagtggggagtctgcagtggacaggcatgtatagcaatcgattatttgcttgttgaggagaagtactcatccgaattg |
110 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32403662 |
agtgaaaagaatagtaggagcaaagtggggagtctgcagtggacaggcatgtatagcaatcgattatttgcttgttgaggagaagtactcatctgaattg |
32403761 |
T |
|
| Q |
111 |
gtatattcattgtacattataaactgttatttattctgaactgttaattttctaatagtaacttagtaagnnnnnnnnnnnnnnctctagatagaactat |
210 |
Q |
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| T |
32403762 |
gtatattcactgtacattataaactgttatttattctgaactgttagttttctaatagtaacttagtaagttttttggttttttctctagatagaactat |
32403861 |
T |
|
| Q |
211 |
taaagaagttcatgagaaaattttatggtgacaacatgatggagtcaaaggcactctcaagaataataaataagcaccacttcgagagattgtgcaatct |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32403862 |
taaagaagttcatgagaaaattttatggtgacaacatgatggagtcaaaggcactctcaagaataataaataagcaccacttcgagagattgtgcaatct |
32403961 |
T |
|
| Q |
311 |
tcttaaagaccctctagttgctgcttcaatagttcatggtggttcagttgatgaaacaaacctgtaatagtagtttcttcctataatcactacacattaa |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32403962 |
tcttaaagaccctctagttgctgcttcaatagttcatggtggttcagttgatgaaacaaacctgtaatagtagtttcttcctataatcactacacattaa |
32404061 |
T |
|
| Q |
411 |
tttctctcttttcatttgtctagttttgcaattaaaataacatgagaatgttttctaatactaaccaataaaagtaactgaagtaaatagtagtcaaatt |
510 |
Q |
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| T |
32404062 |
tttctctcttttcatttgtctagttttgcaattaaaataacatgagaatgttttctaatactaaccaataaaagtaactgaagtaaatagtagtcaaatt |
32404161 |
T |
|
| Q |
511 |
aatttatttcatcagtttcttacaactttgtcaggtttattgagcctacaatattgttagatccaccactagatgctgaaatcatgacagaagaaatttt |
610 |
Q |
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| T |
32404162 |
aatttatttcatcagtttcttacaactttgtcaggtttattgagcctacaatattgttagatccaccactagatgctgaaatcatgacagaagaaatttt |
32404261 |
T |
|
| Q |
611 |
tggtccactacttccagtgatcactgtgagaatcaacaatttctctttcatgttctcatttctcacatacaatgtgactatctctttgaattacagtact |
710 |
Q |
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| T |
32404262 |
tggtccactacttccagtgatcactgtgagaatcaacaatttctctttcatgttctcatttctcacatacaatgtgactatctctttgaattacagtact |
32404361 |
T |
|
| Q |
711 |
taacttgccatctatacaggtgaataaaattcaggaaagtattgaatttataaactcaaggccaaaac |
778 |
Q |
| |
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| T |
32404362 |
taacttgccatctatacaggtgaataaaattcaggaaagtattgaatttataaactcaaggccaaaac |
32404429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 3e-75; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 208 - 375
Target Start/End: Complemental strand, 43304691 - 43304524
Alignment:
| Q |
208 |
tattaaagaagttcatgagaaaattttatggtgacaacatgatggagtcaaaggcactctcaagaataataaataagcaccacttcgagagattgtgcaa |
307 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43304691 |
tattgaagaagttcatgagaaaattttatggtgacaacatgatgaagtcaacggcactctcaagaataataaataagcaccactttgagagattgtgcaa |
43304592 |
T |
|
| Q |
308 |
tcttcttaaagaccctctagttgctgcttcaatagttcatggtggttcagttgatgaaacaaacctgt |
375 |
Q |
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| T |
43304591 |
tcttcttaaagaccctctatttgctgcttcaatagttcatggtggttcaattgatgaaacaaacctgt |
43304524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 545 - 635
Target Start/End: Complemental strand, 43304525 - 43304435
Alignment:
| Q |
545 |
gtttattgagcctacaatattgttagatccaccactagatgctgaaatcatgacagaagaaatttttggtccactacttccagtgatcact |
635 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
43304525 |
gtttattgagcctacaatattgttacatccaccactagatgctgaaatcatgacagaagaaatatttggtccactacttccggtgatcact |
43304435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 43304798 - 43304699
Alignment:
| Q |
11 |
agtgagaagaatagtaggagcaaagtggggagtctgcagtggacaggcatgtatagcaatcgattatttgcttgttgaggagaagtactcatccgaattg |
110 |
Q |
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| T |
43304798 |
agtgaaaagaatagtaggagcaaagtggggagtatgtactggacaagcatgtatagcaatcgattatttgcttgttaaggagaagcactcatctgaattg |
43304699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 3e-44; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 228 - 375
Target Start/End: Complemental strand, 6660097 - 6659951
Alignment:
| Q |
228 |
aaattttatggtgacaacatgatggagtcaaaggcactctcaagaataataaataagcaccacttcgagagattgtgcaatcttcttaaagaccctctag |
327 |
Q |
| |
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|||||||||||||||||||||||| |||||| | |||| |||||||||||||| || |||||||| |||||||||||||||||||||||||||| |||| |
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| T |
6660097 |
aaattttatggtgacaacatgatgaagtcaacgacactttcaagaataataaa-aatcaccactttgagagattgtgcaatcttcttaaagaccttctat |
6659999 |
T |
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| Q |
328 |
ttgctgcttcaatagttcatggtggttcagttgatgaaacaaacctgt |
375 |
Q |
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|||||||||||||||||| |||||||||| ||||||||| ||| |||| |
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| T |
6659998 |
ttgctgcttcaatagttcctggtggttcaattgatgaaaaaaagctgt |
6659951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 545 - 635
Target Start/End: Complemental strand, 6659952 - 6659862
Alignment:
| Q |
545 |
gtttattgagcctacaatattgttagatccaccactagatgctgaaatcatgacagaagaaatttttggtccactacttccagtgatcact |
635 |
Q |
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| T |
6659952 |
gtttattgagcctacaatattgttacatccaccactagatgctgaaatcatgacagaagaaatatttggtccactacttccggtgatcact |
6659862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 6664599 - 6664515
Alignment:
| Q |
11 |
agtgagaagaatagtaggagcaaagtggggagtctgcagtggacaggcatgtatagcaatcgattatttgcttgttgaggagaag |
95 |
Q |
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||||| ||||||||||||||||||||||||||| || | |||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
6664599 |
agtgaaaagaatagtaggagcaaagtggggagtatgtactggacaagcatgtatagcaatcgattatttgcttgtaaaggagaag |
6664515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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