View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14429_low_4 (Length: 491)
Name: NF14429_low_4
Description: NF14429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14429_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 33742643 - 33742183
Alignment:
| Q |
1 |
cataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacctatgcagcattttcgcagcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33742643 |
cataatactcttggtactgattttcccatgttttctgtctgtaatgcctctcttcctcatttaaaaggtagccatcaacctatgcagcattttcacagcg |
33742544 |
T |
|
| Q |
101 |
agaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaatatgtgcttgtgtgtgtaatacaaagcagcatctagatgga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33742543 |
agaataatcaatgtcttatgcatgaccatgaaatgatagtaaaatagcgcggacacaaatatgtgcttgtgtgtgtaatacaaagcagcatctagatgga |
33742444 |
T |
|
| Q |
201 |
aaaatttcaagggcctaacaaaaatatcatgttnnnnnnnnntgtatctatttgccgtctatcaaaaagatcatgttcaaaatctgaaaatagttttgct |
300 |
Q |
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| T |
33742443 |
aaaatttcaagagcctaacaaaaatatcatgttaaaaaaaaatgtatctatttgccgtctatca--------------aaaatctgaaaatagttttgct |
33742358 |
T |
|
| Q |
301 |
aaaataatgtaacagtcatttgcagctctaacagataaaacattcacttgttagtcacctcttcgtcgtcgatatcagagaaactttctgattcatcttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33742357 |
aaaataatgtaacagtcatttgcagctctaacagataaaacattcacttattagtcacctcttcgtcgtcgatatcagagaaactttctgattcatcttg |
33742258 |
T |
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| Q |
401 |
agcttctgcagtggagtcatcatctctatgagagtcatcattatcatcatctttagaggattcactctcaaaatc |
475 |
Q |
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| T |
33742257 |
agcttctgcagtggagtcatcatctctatgcgagtcatcattatcatcatctttagaggattcactctcaaaatc |
33742183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 49 - 217
Target Start/End: Complemental strand, 33731154 - 33730978
Alignment:
| Q |
49 |
tctcttcctcatttaaaaggtagccatcaacctatgcagcattttcgcagcgagaataatcaatgt-cttatgcatgaccatgaaatgatagtaaaatag |
147 |
Q |
| |
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||||||||||||| |||||| | |||||||||| |||||||||| ||||| |||||||||| ||| ||||||||||| |||| |||||||| ||||| |
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| T |
33731154 |
tctcttcctcattgaaaaggaacgcatcaacctaagcagcattttggcagcaagaataatcagtgtgtttatgcatgacaatgatctgatagtataatag |
33731055 |
T |
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| Q |
148 |
--------cgcggacacaaatatgtgcttgtgtgtgtaatacaaagcagcatctagatggaaaaatttcaagggccta |
217 |
Q |
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| T |
33731054 |
cgcagagccgcagacacaaacatgtgtttgtgtgtgtaatacaaagcaacatcaagat-gcaaattttcaagggccta |
33730978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 33619663 - 33619607
Alignment:
| Q |
328 |
ctaacagataaaacattc-acttgttagtcacctcttcgtcgtcgatatcagagaaa |
383 |
Q |
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|||||| |||||||||| |||||||||||||||||||||| ||||||||||||||| |
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| T |
33619663 |
ctaacacataaaacattatacttgttagtcacctcttcgtcatcgatatcagagaaa |
33619607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 336 - 406
Target Start/End: Complemental strand, 33729751 - 33729680
Alignment:
| Q |
336 |
taaaacatt-cacttgttagtcacctcttcgtcgtcgatatcagagaaactttctgattcatcttgagcttc |
406 |
Q |
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| T |
33729751 |
taaaacattacacttattaatcacctcttggtcatcaatatcagagaaatttcctgattcatcttgagcttc |
33729680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 331
Target Start/End: Complemental strand, 33619764 - 33619690
Alignment:
| Q |
258 |
tctatcaaaaagatcatgttcaaaatctgaaaatagttttg-ctaaaataatgtaacagtcatttgcagctctaa |
331 |
Q |
| |
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|||| |||||||| ||||||||||||||||||||| || | | |||| ||||||||||||||||||| |||||| |
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| T |
33619764 |
tctaccaaaaagacgatgttcaaaatctgaaaataggttagccaaaaacaatgtaacagtcatttgcatctctaa |
33619690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 33729855 - 33729785
Alignment:
| Q |
261 |
atcaaaaagatcatgttcaaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaa |
331 |
Q |
| |
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|||||| ||||||||||||||| | |||||||||||| ||| |||| ||||||||||||||| ||||| |
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| T |
33729855 |
atcaaacagatcatgttcaaaaaccaaaaatagttttgactaaacaatgcaacagtcatttgcagttctaa |
33729785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 331
Target Start/End: Complemental strand, 33730064 - 33729994
Alignment:
| Q |
261 |
atcaaaaagatcatgttcaaaatctgaaaatagttttgctaaaataatgtaacagtcatttgcagctctaa |
331 |
Q |
| |
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|||||| ||||||||||||||| | |||||||||||| ||| |||| ||||||||||||||| ||||| |
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| T |
33730064 |
atcaaacagatcatgttcaaaaaccaaaaatagttttgactaaacaatgcaacagtcatttgcagttctaa |
33729994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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