View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14429_low_9 (Length: 288)
Name: NF14429_low_9
Description: NF14429
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14429_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 37071533 - 37071810
Alignment:
| Q |
1 |
tgtagagctcacaagctttgaaaaccttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctc |
100 |
Q |
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| T |
37071533 |
tgtagagctcacaagctttgaaaatcttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctc |
37071632 |
T |
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| Q |
101 |
tatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttcttctaacaagtccttcatatttgagtcttcatcatagttttctaac |
200 |
Q |
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| T |
37071633 |
tatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttcttctaacaagtccttcatatttgagtcttcatcatagttttctaac |
37071732 |
T |
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| Q |
201 |
aagtcctccatatttgactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgctgttctt |
278 |
Q |
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| T |
37071733 |
aagtcctccatatttgactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgctgttctt |
37071810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 97
Target Start/End: Original strand, 37081376 - 37081470
Alignment:
| Q |
3 |
tagagctcacaagctttgaaaaccttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacatt |
97 |
Q |
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| T |
37081376 |
tagagctcacaagctttgaaaatcttatccccaccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacatt |
37081470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 56 - 153
Target Start/End: Complemental strand, 36952556 - 36952459
Alignment:
| Q |
56 |
acataacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatctt |
153 |
Q |
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| T |
36952556 |
acataacattgcctcatgtaacatagtgttaccttgaacgttcttcatcttcacaaattctaacaagtcctccatatttgacttttcatcatactctt |
36952459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 194 - 271
Target Start/End: Complemental strand, 36952499 - 36952422
Alignment:
| Q |
194 |
ttctaacaagtcctccatatttgactcttcatcatagtcttttgggctatccaaattgttagtgtattctaaccatgc |
271 |
Q |
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| T |
36952499 |
ttctaacaagtcctccatatttgacttttcatcatactcttttgggtcatccaaattgttagtgtattctaaccatgc |
36952422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 36964024 - 36963878
Alignment:
| Q |
9 |
tcacaagctttgaaaaccttatccccgccaattctcttcttgtcacgacataacattgcctcatgaaacatagtgtttccttcaacattctctatcttca |
108 |
Q |
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| T |
36964024 |
tcacaaactttgaaaatcttgtccccgccaattctcttaatctcaccacaaaacattgcctcatgtaacatagtgtttccttgagcattctccttgttca |
36963925 |
T |
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| Q |
109 |
caaattttaacaagtcctccatatttgacttttcatcataatcttct |
155 |
Q |
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| T |
36963924 |
caaaacataataggtcctccatatttaacacctcatcatagtcttct |
36963878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 155
Target Start/End: Complemental strand, 36946651 - 36946555
Alignment:
| Q |
59 |
taacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttct |
155 |
Q |
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| T |
36946651 |
taacattgcctcatgtaacatagtgtttccttgagcattctccttgttcacaaaacataataggtcctccatatttaacacctcatcatagtcttct |
36946555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 59 - 156
Target Start/End: Original strand, 12495479 - 12495576
Alignment:
| Q |
59 |
taacattgcctcatgaaacatagtgtttccttcaacattctctatcttcacaaattttaacaagtcctccatatttgacttttcatcataatcttctt |
156 |
Q |
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| T |
12495479 |
taacattgcctcatgtaacatagtgttgcctcgaacattcttctcctttacaaaatttaacaagtcctccatatttgacttttcatcatagtcttctt |
12495576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 12495536 - 12495573
Alignment:
| Q |
197 |
taacaagtcctccatatttgactcttcatcatagtctt |
234 |
Q |
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| T |
12495536 |
taacaagtcctccatatttgacttttcatcatagtctt |
12495573 |
T |
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