View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442R-Insertion-10 (Length: 623)

Name: NF1442R-Insertion-10
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442R-Insertion-10
NF1442R-Insertion-10
[»] chr1 (13 HSPs)
chr1 (9-455)||(51547639-51548086)
chr1 (485-623)||(17445334-17445472)
chr1 (462-621)||(35907551-35907709)
chr1 (462-623)||(3828983-3829142)
chr1 (485-623)||(321385-321523)
chr1 (463-620)||(32982067-32982223)
chr1 (485-623)||(42310949-42311087)
chr1 (487-623)||(7433468-7433604)
chr1 (464-620)||(26144256-26144411)
chr1 (486-590)||(41972314-41972420)
chr1 (493-590)||(33489716-33489815)
chr1 (485-570)||(23313259-23313345)
chr1 (485-549)||(35951427-35951491)
[»] chr7 (18 HSPs)
chr7 (462-623)||(37002152-37002312)
chr7 (462-623)||(34389064-34389224)
chr7 (487-623)||(38638244-38638380)
chr7 (485-622)||(35090189-35090326)
chr7 (462-623)||(26624744-26624905)
chr7 (462-623)||(33685563-33685723)
chr7 (462-622)||(8867740-8867899)
chr7 (463-623)||(5555487-5555646)
chr7 (488-623)||(36658205-36658340)
chr7 (485-623)||(3114104-3114242)
chr7 (485-623)||(40920011-40920149)
chr7 (470-623)||(43184476-43184628)
chr7 (463-623)||(8394125-8394284)
chr7 (463-623)||(36630816-36630975)
chr7 (464-620)||(14777118-14777273)
chr7 (462-623)||(7002724-7002884)
chr7 (462-623)||(7048595-7048755)
chr7 (531-590)||(10868514-10868575)
[»] chr6 (9 HSPs)
chr6 (462-623)||(28996729-28996889)
chr6 (463-623)||(18339106-18339265)
chr6 (463-623)||(13837821-13837980)
chr6 (485-615)||(29743304-29743434)
chr6 (486-623)||(34948766-34948903)
chr6 (485-618)||(33229349-33229482)
chr6 (464-620)||(398618-398773)
chr6 (462-549)||(24697899-24697985)
chr6 (488-559)||(31028436-31028507)
[»] chr5 (20 HSPs)
chr5 (486-623)||(37254663-37254800)
chr5 (485-623)||(33430342-33430480)
chr5 (462-623)||(31680366-31680526)
chr5 (462-622)||(17332560-17332719)
chr5 (462-620)||(12278871-12279028)
chr5 (485-619)||(31501728-31501862)
chr5 (463-623)||(13817977-13818136)
chr5 (485-623)||(10033948-10034086)
chr5 (485-623)||(39657514-39657652)
chr5 (485-620)||(16155018-16155153)
chr5 (485-618)||(43068898-43069031)
chr5 (494-622)||(16333885-16334013)
chr5 (463-617)||(36293635-36293788)
chr5 (464-620)||(26283329-26283484)
chr5 (465-616)||(1776391-1776541)
chr5 (463-620)||(39434696-39434852)
chr5 (463-615)||(3155647-3155798)
chr5 (487-620)||(19985962-19986095)
chr5 (489-623)||(36291396-36291530)
chr5 (486-590)||(28801309-28801415)
[»] chr3 (17 HSPs)
chr3 (462-623)||(45182980-45183140)
chr3 (462-623)||(33040952-33041112)
chr3 (486-623)||(11018220-11018357)
chr3 (462-621)||(6930904-6931062)
chr3 (467-623)||(27935182-27935337)
chr3 (462-619)||(6503581-6503737)
chr3 (463-620)||(19390146-19390302)
chr3 (488-620)||(6269437-6269569)
chr3 (462-615)||(19565517-19565669)
chr3 (464-620)||(22968455-22968610)
chr3 (463-619)||(34084134-34084289)
chr3 (462-615)||(45335874-45336025)
chr3 (464-620)||(39771791-39771946)
chr3 (462-623)||(35514265-35514421)
chr3 (485-623)||(40081749-40081885)
chr3 (486-590)||(5135291-5135397)
chr3 (463-512)||(22922157-22922205)
[»] chr4 (36 HSPs)
chr4 (466-621)||(3292906-3293060)
chr4 (462-623)||(6690243-6690403)
chr4 (462-623)||(30216750-30216910)
chr4 (465-619)||(43143596-43143749)
chr4 (489-623)||(48989353-48989487)
chr4 (464-619)||(42333788-42333942)
chr4 (462-623)||(50205085-50205245)
chr4 (485-623)||(44156672-44156810)
chr4 (462-613)||(10352902-10353052)
chr4 (486-623)||(29319713-29319850)
chr4 (464-620)||(20129311-20129466)
chr4 (463-623)||(25930708-25930867)
chr4 (488-619)||(35545977-35546108)
chr4 (463-623)||(36382354-36382512)
chr4 (9-254)||(47763659-47763898)
chr4 (488-618)||(26448077-26448206)
chr4 (485-619)||(28877262-28877396)
chr4 (488-622)||(29995992-29996126)
chr4 (464-620)||(26439290-26439445)
chr4 (464-620)||(34407295-34407450)
chr4 (464-620)||(43355905-43356060)
chr4 (464-620)||(13012189-13012344)
chr4 (488-619)||(17511245-17511377)
chr4 (464-620)||(47500774-47500929)
chr4 (522-623)||(6235578-6235679)
chr4 (488-623)||(40529039-40529174)
chr4 (499-618)||(1817752-1817871)
chr4 (486-615)||(30077647-30077776)
chr4 (338-452)||(47763430-47763545)
chr4 (542-619)||(13392893-13392970)
chr4 (542-619)||(13396032-13396109)
chr4 (485-559)||(48129987-48130061)
chr4 (488-590)||(30109980-30110084)
chr4 (489-557)||(6254569-6254637)
chr4 (488-554)||(45194200-45194266)
chr4 (463-549)||(27363361-27363446)
[»] chr2 (22 HSPs)
chr2 (462-623)||(8147350-8147511)
chr2 (462-623)||(45418582-45418742)
chr2 (489-623)||(12756845-12756979)
chr2 (462-623)||(44084611-44084771)
chr2 (485-623)||(771020-771158)
chr2 (463-622)||(42439986-42440144)
chr2 (466-620)||(41251645-41251798)
chr2 (463-623)||(35962715-35962874)
chr2 (486-623)||(8059341-8059478)
chr2 (464-620)||(6403815-6403970)
chr2 (485-623)||(18981637-18981775)
chr2 (486-623)||(31581630-31581767)
chr2 (489-621)||(2285887-2286019)
chr2 (463-623)||(32127149-32127308)
chr2 (487-620)||(17445052-17445183)
chr2 (485-623)||(16405621-16405759)
chr2 (463-601)||(2958131-2958267)
chr2 (493-623)||(26162710-26162837)
chr2 (462-564)||(26237956-26238056)
chr2 (488-590)||(4555250-4555354)
chr2 (485-543)||(34905970-34906028)
chr2 (485-554)||(7072627-7072698)
[»] chr8 (14 HSPs)
chr8 (463-619)||(34136837-34136992)
chr8 (462-620)||(23402107-23402264)
chr8 (462-623)||(16788033-16788193)
chr8 (462-619)||(4404007-4404163)
chr8 (486-618)||(9877242-9877374)
chr8 (463-623)||(15838286-15838444)
chr8 (485-623)||(3648802-3648940)
chr8 (487-623)||(29728394-29728530)
chr8 (462-618)||(36408550-36408705)
chr8 (496-622)||(42230971-42231095)
chr8 (485-590)||(3435290-3435397)
chr8 (464-620)||(39914516-39914670)
chr8 (462-619)||(2729208-2729364)
chr8 (487-557)||(40470567-40470637)
[»] scaffold0502 (1 HSPs)
scaffold0502 (463-623)||(5230-5389)
[»] scaffold0041 (1 HSPs)
scaffold0041 (485-623)||(52946-53084)
[»] scaffold0154 (1 HSPs)
scaffold0154 (485-620)||(31501-31636)
[»] scaffold0069 (1 HSPs)
scaffold0069 (485-620)||(17863-17998)
[»] scaffold0002 (1 HSPs)
scaffold0002 (464-620)||(480468-480623)
[»] scaffold2142 (1 HSPs)
scaffold2142 (464-620)||(523-678)


Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 455
Target Start/End: Complemental strand, 51548086 - 51547639
Alignment:
Q  9 ttttggtcgttcatgaatatttcatatctcgtattttaatttgatttaatcaaaggtcattgaagcgtgttcattttgttcatattcatga-tgatgaag 107  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  51548086 ttttggtcattcatgaatatttcatatctcgtattttaatttgatttaatcaaaggtcattgaagcgtgttcattttgttcatattcatgaatgatgaag 51547987  T
Q  108 aatagaaggattggaagatattgtgctcatgcttcaatgacctggcatggaagaaatgcttttttgctgtcgtgatgactgatgatagtcaatgaatatg 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  51547986 aatagaaggattggaagatgttgtgctcatgcttcaatgacctggcatggatgaaatgcttttttgctgtcgtgatgactgatgatagtcaatgcatatg 51547887  T
Q  208 aaccaaattgaattaatcggcaatcaatttcttttgtcttgtttgttcccgctcacggaccatcttctttctgcaacnnnnnnnnnggggttatactaaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |         |||||||||||||     
T  51547886 aaccaaattgaattaatcggcaatcaatttcttttgtcttgtttgttcccgctcacgtaccatcttctttctgcacctttttttttggggttatactaac 51547787  T
Q  308 atttaattgatgaatcatagtaaaatgcttaggaaaacctaactgttggtagtggggttaaagattgtgtgccggaatatgtagatgttctcatttttat 407  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51547786 atttaattgatgaatcatagtaaaatgcttaggaaaacctaattgttggtagtggggttaaagattgtgtgccggaatatgtagatgttctcatttttat 51547687  T
Q  408 atctaaaaaatcttagccattaataagatctgatggtatatttttcat 455  Q
    ||||||||||||||||||||||||||||| | ||||||||||||||||    
T  51547686 atctaaaaaatcttagccattaataagatttaatggtatatttttcat 51547639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 17445334 - 17445472
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||| |||| |||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  17445334 gggctggatcaataatttttgtacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgca 17445433  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  17445434 aataggtctcggaattttatttagcacattattgacggg 17445472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 462 - 621
Target Start/End: Original strand, 35907551 - 35907709
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||| ||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||  |||||||||||||||||| |||| |    
T  35907551 cggcgacctcgggcggtcgcccggg-cttgatcgataatttttgcacattagacccaacccaaaagccaattagtacacttacaaaaagaaaattttggg 35907649  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacg 621  Q
     |||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35907650 taatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattattgacg 35907709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 3828983 - 3829142
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||| ||||||| | ||||||||||  |||||||||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||||||||| |    
T  3828983 cggcaaccccggacggtcgctcgggt-tcgatcgataatttttgcacattaaacccaacccaaaagttcattaacacacttacaaaaagaaaaatttggg 3829081  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||| ||| |||||||||||||| |||||||||| ||||||||||||||||||    
T  3829082 caatctgaaaattttcatacgcaaataggtct-ggaattttatttagcacactattgacggg 3829142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 321523 - 321385
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||||||||||||||||||  ||||||| ||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||| ||||||| | |||    
T  321523 gggctcgatcgataatttttgtgcattagatccaacccaaaagtccattaacacagttacaaaaagaaaaatttgggcaatctgaaaattctcatatgca 321424  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||||||| || |||| ||||||||||    
T  321423 aataggtctcggaattttatttaacacattattgacggg 321385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 463 - 620
Target Start/End: Complemental strand, 32982223 - 32982067
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||||  ||||| | ||||||| | |||||||||||||||||||  |    
T  32982223 ggcgaccccgggcggtcgcgcgggcc-cgatcgataatttttgcacattagacccaacctaaaagcccattaacatatttacaaaaagaaaaatttggac 32982125  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    |||||||| ||| |||||| ||||||||||| |||||||||| |||||| ||||||||    
T  32982124 aatctgaaaattgtcacacacaaataggtcttggaattttatttagcactctattgac 32982067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 42311087 - 42310949
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||||||||| |||| |||||| |  |||||||| ||||||||||||||||||| |||||||||| ||| |||||||||    
T  42311087 gggctcgatcgataatttttgcacattagactcaacccaaaagcccgttaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgca 42310988  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||| |||| | |||||||| ||| || |||||||||||    
T  42310987 aataagtcttgaaattttatttagtacgctattgacggg 42310949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 487 - 623
Target Start/End: Original strand, 7433468 - 7433604
Alignment:
Q  487 gctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaa 586  Q
    |||||||| |||||||||||||||||||| |||| |||||| | ||||||||| |||||||||||||| |||| ||||||| || ||| |||||| ||||    
T  7433468 gctcgatctataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctaaaaattgtcacacacaaa 7433567  T
Q  587 taggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||| | |||||||| ||||||||||||||||||    
T  7433568 taggtcttgaaattttatttagcacactattgacggg 7433604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 26144256 - 26144411
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||  |||||   ||||||||| ||| ||||||||||||||| |||    
T  26144256 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggca 26144354  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    || |||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  26144355 atttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 26144411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 486 - 590
Target Start/End: Complemental strand, 41972420 - 41972314
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttg--agcaatctgaagattctcacacgc 583  Q
    ||||||||||||||||||||||||||||| |||||  ||||| | |||||||||||||||||||||||||||||  |  |||||||| ||||||||||||    
T  41972420 ggctcgatcgataatttttgcacattagatccaacctaaaagcctattaacacacttacaaaaagaaaaatttggaaaaaatctgaaaattctcacacgc 41972321  T
Q  584 aaatagg 590  Q
    |||||||    
T  41972320 aaatagg 41972314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 493 - 590
Target Start/End: Original strand, 33489716 - 33489815
Alignment:
Q  493 tcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc--aatctgaagattctcacacgcaaatagg 590  Q
    ||||||||||||| ||||||||| |||   ||||| | |||||||||||||| |||||||||||||||||  |||||||| |||||||||||||||||||    
T  33489716 tcgataatttttgtacattagactcaaactaaaagcccattaacacacttactaaaagaaaaatttgagcaaaatctgaaaattctcacacgcaaatagg 33489815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 570
Target Start/End: Original strand, 23313259 - 23313345
Alignment:
Q  485 gggctcgatcgataattt-ttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaa 570  Q
    ||||||||| ||| |||| ||||||||||||| ||||  ||||||  ||||||||| ||||||||||||||||||| ||||||||||    
T  23313259 gggctcgattgatgatttgttgcacattagactcaacataaaagttcattaacacatttacaaaaagaaaaatttgggcaatctgaa 23313345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 549
Target Start/End: Complemental strand, 35951491 - 35951427
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaa 549  Q
    ||||||||||||||||||||| |||||||  | ||| ||| || | ||||||||||| |||||||    
T  35951491 gggctcgatcgataatttttgtacattaggtcgaacccaatagcccattaacacactaacaaaaa 35951427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 118; Significance: 7e-60; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 37002312 - 37002152
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| |||| ||||  ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |    
T  37002312 cggcgaccccgggcggtcgttcggt-ctcgatcgataatttttgcacattagacccaatccaaaagtcaattaacacacttacaaaaagaaaaatttggg 37002214  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  37002213 caatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacggg 37002152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 34389224 - 34389064
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||| |    
T  34389224 cggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttggg 34389126  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| ||||||    
T  34389125 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacattatcgacggg 34389064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 487 - 623
Target Start/End: Complemental strand, 38638380 - 38638244
Alignment:
Q  487 gctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaa 586  Q
    ||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||    
T  38638380 gctcgattgataatttttgcacattagatccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaaa 38638281  T
Q  587 taggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||||| ||||||||||||||||||    
T  38638280 taggtctcggaattttatttagcacactattgacggg 38638244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 485 - 622
Target Start/End: Original strand, 35090189 - 35090326
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| | |||||||| |||||||||||||    
T  35090189 gggctcgatcaataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggtaatctgaaaattctcacacgca 35090288  T
Q  585 aataggtctcggaattttatatagcacactattgacgg 622  Q
    |||||||||||||||||||| |||||||||||||||||    
T  35090289 aataggtctcggaattttatttagcacactattgacgg 35090326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 26624744 - 26624905
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgat-cgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttga 560  Q
    |||| ||||||||| ||||| | ||||||||| |||||||||||||| |||||||||||  ||||||| ||||||||||||||||||||||||||||||     
T  26624744 cggcaaccccgggcggtcgc-ctgggctcgattcgataatttttgcatattagacccaatccaaaagttaattaacacacttacaaaaagaaaaatttgg 26624842  T
Q  561 gcaatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26624843 gcaatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacggg 26624905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 33685563 - 33685723
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||||||||||||| |    
T  33685563 cggcgaccccaggcagtcgctcggg-ctcgatcgataatttttgcacattaaacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggg 33685661  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||| ||||||||| |||||  |||||||| ||||||||||||||||||    
T  33685662 caatctgaaaattctcatacgcaaatatgtctcataattttatttagcacactattgacggg 33685723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 462 - 622
Target Start/End: Complemental strand, 8867899 - 8867740
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| |||||||||||||||||||| |||||||||||  |||||| ||||||| ||| ||||||||||||||||||| |    
T  8867899 cggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcatattagacccaatccaaaagccaattaatacatttacaaaaagaaaaatttggg 8867801  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacgg 622  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  8867800 caatcggaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgg 8867740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 5555487 - 5555646
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||| |||||| | |||||| || ||||||||||||||||||| ||    
T  5555487 ggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacgcatttacaaaaagaaaaatttgggc 5555585  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  5555586 aatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacggg 5555646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 488 - 623
Target Start/End: Original strand, 36658205 - 36658340
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaat 587  Q
    |||||||||||||||||||||||| ||||||||  ||||| ||||||||| ||| ||||||| ||||||||| |||||||||| ||||||||||||||||    
T  36658205 ctcgatcgataatttttgcacattggacccaaccgaaaagccaattaacatactaacaaaaataaaaatttgggcaatctgaaaattctcacacgcaaat 36658304  T
Q  588 aggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||||||||||| ||||||||||||||||||    
T  36658305 aggtctcggaattttatttagcacactattgacggg 36658340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 3114242 - 3114104
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| |||||| ||    
T  3114242 gggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacaca 3114143  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  3114142 aataggtcttggaattttatttagcacactattgacggg 3114104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 40920149 - 40920011
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||||||||   ||| |||||| ||||||||||| |||||||||||||||||||  ||||||||| ||||||||| |||    
T  40920149 gggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatgca 40920050  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  40920049 aataggtctcggaattttatttagcacactattgacggg 40920011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 470 - 623
Target Start/End: Complemental strand, 43184628 - 43184476
Alignment:
Q  470 ccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctga 569  Q
    |||||| |||||||||| ||||||||||||||||| | ||| ||||  ||| |||||| ||||||||| ||||||||||||||||||||| |||||||||    
T  43184628 ccgggcggtcgctcggg-ctcgatcgataatttttacgcatcagacttaacccaaaagccaattaacatacttacaaaaagaaaaatttgggcaatctga 43184530  T
Q  570 agattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  43184529 aaattctcacacgcaaataggtctctgaattttatttagcacactattgacggg 43184476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 8394125 - 8394284
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||||||| || ||||  ||||||| ||||||||| |||||||| |||||||||| ||    
T  8394125 ggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaggaaaaatttgggc 8394223  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| ||||||| |||||||||| |||||||||| ||||||||||||||||||    
T  8394224 aatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgacggg 8394284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 36630816 - 36630975
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||| | ||||| |||| ||||||||||||||||||||||||| || ||||  ||||||| ||||||||| ||||||||||||||||||| ||    
T  36630816 ggcgaccccggacggtcgcccggg-ctcgatcgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggc 36630914  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||||||||||||||| |||||||||  ||||||||||||||||||    
T  36630915 aatctgaaaattgtcacacgcaaataggtcttggaattttagttagcacactattgacggg 36630975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 464 - 620
Target Start/End: Complemental strand, 14777273 - 14777118
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||| ||||||| ||||| |||| |||||||||||||||||||||||||||| |||| ||||||   ||||||||| ||||||||||||||||||| |||    
T  14777273 gcgatcccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggca 14777175  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| |||||||||| |||||||||| |||||||||||||||    
T  14777174 atctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 14777118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 7002724 - 7002884
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    ||||||||||| || ||||| |||| |||||||||  ||||||  |||||| ||||||| |||||| |||||||||||| |||||||| |||||||||      
T  7002724 cggcgaccccgagcggtcgcccggg-ctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttgga 7002822  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7002823 caatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacggg 7002884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 7048595 - 7048755
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    ||||||||||| || ||||| |||| |||||||||  ||||||  |||||| ||||||| |||||| |||||||||||| |||||||| |||||||||      
T  7048595 cggcgaccccgagcggtcgcccggg-ctcgatcgacgatttttctacattacacccaacccaaaagccaattaacacacatacaaaaataaaaatttgga 7048693  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  7048694 caatctaaaaattctcacacgcaaataggtcacggaattttatttagcacactattgacggg 7048755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 531 - 590
Target Start/End: Complemental strand, 10868575 - 10868514
Alignment:
Q  531 attaacacacttacaaaaagaaaaatttgagc--aatctgaagattctcacacgcaaatagg 590  Q
    ||||||||| ||||||||||||||||||| ||  |||||||| |||||||| ||||||||||    
T  10868575 attaacacatttacaaaaagaaaaatttgggcaaaatctgaaaattctcacgcgcaaatagg 10868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 7e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 28996729 - 28996889
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| || | ||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||| |    
T  28996729 cggcgaccccgggcggtcgcccgag-ctcgatcgataatttttgcgcattagacccaacctaaaagtcaattaacacacttacaaaaagaaaaatttggg 28996827  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28996828 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacggg 28996889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 18339106 - 18339265
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||| |||| ||    
T  18339106 ggcgaccccgggcggtcgcccggg-ctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggc 18339204  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  18339205 aatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacggg 18339265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 13837821 - 13837980
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    |||||||||||||  |||||||||  ||||||||||||||||| ||||||||| |||| ||||||   || |||||| ||||||||||||||||||| ||    
T  13837821 ggcgaccccgggcgatcgctcgggt-tcgatcgataatttttgtacattagactcaacccaaaagcacatcaacacatttacaaaaagaaaaatttgggc 13837919  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  13837920 aatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacggg 13837980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 485 - 615
Target Start/End: Original strand, 29743304 - 29743434
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||| |||||||||||||||||||||||||||||  ||||||  ||||||||| ||||| ||||||||||||| |||||||||| ||||| |||||||    
T  29743304 gggctcaatcgataatttttgcacattagacccaaccaaaaagttcattaacacatttacagaaagaaaaatttgggcaatctgaaaattcttacacgca 29743403  T
Q  585 aataggtctcggaattttatatagcacacta 615  Q
    |||||||||||||||||||| ||||||||||    
T  29743404 aataggtctcggaattttatttagcacacta 29743434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 34948903 - 34948766
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    |||||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| |||||| |||    
T  34948903 ggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacacaa 34948804  T
Q  586 ataggtctcggaattttatatagcacactattgacggg 623  Q
    |||| ||| | |||||||| ||||||||||||||||||    
T  34948803 atagatcttgaaattttatttagcacactattgacggg 34948766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 485 - 618
Target Start/End: Complemental strand, 33229482 - 33229349
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||| || |||||||||||||||| |||||||||| ||||| ||||| |    
T  33229482 gggctcgatcgatcatttttgtacattagacccaacccaaaagtccattaacacatttccaaaaagaaaaatttgggcaatctgaaaattcttacacgta 33229383  T
Q  585 aataggtctcggaattttatatagcacactattg 618  Q
    |||| ||||||| ||||||| |||||||||||||    
T  33229382 aataagtctcgggattttatttagcacactattg 33229349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 398618 - 398773
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||  |||||   ||||||||| ||| ||||||||||||||| |||    
T  398618 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggca 398716  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    || |||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  398717 atttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 398773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 462 - 549
Target Start/End: Complemental strand, 24697985 - 24697899
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaa 549  Q
    |||||||||||| || |||| |||| ||| ||||||||||||| |||||||| |||||| |||||| | |||||||||||||||||||    
T  24697985 cggcgaccccggacactcgcccggg-ctcaatcgataattttttcacattaggcccaacccaaaagcccattaacacacttacaaaaa 24697899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 488 - 559
Target Start/End: Complemental strand, 31028507 - 31028436
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttg 559  Q
    ||||||||||||||||||||||||||| |||||  |||||   ||||||||| |||||||||| ||| ||||    
T  31028507 ctcgatcgataatttttgcacattagatccaacctaaaagctcattaacacatttacaaaaaggaaattttg 31028436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 118; Significance: 7e-60; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 486 - 623
Target Start/End: Original strand, 37254663 - 37254800
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  37254663 ggctcgatcgataatttttgcacattagacccaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaa 37254762  T
Q  586 ataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||||||||||||| ||||||| ||||||||||    
T  37254763 ataggtctcggaattttatttagcacattattgacggg 37254800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 33430342 - 33430480
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  33430342 gggctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgca 33430441  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  33430442 aataggtctcggaattttatttagcacactattgacggg 33430480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 31680366 - 31680526
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  31680366 cggcgaccccgggcggtcgcccggg-ctcgatcgataatttttccgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttggg 31680464  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  31680465 caatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacggg 31680526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 462 - 622
Target Start/End: Complemental strand, 17332719 - 17332560
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    ||||||||||||||  |||| |||| |||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  17332719 cggcgaccccgggcgttcgcccggg-ctcgatcgataatttttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttggg 17332621  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacgg 622  Q
    ||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  17332620 caatctgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacgg 17332560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 462 - 620
Target Start/End: Complemental strand, 12279028 - 12278871
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||| ||||||| ||||| |||  ||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |    
T  12279028 cggcgatcccgggcggtcgcccgga-ctcgatcgataatttttgcacattagacccaacccaaaggccaattaacacacttacaaaaagaaaaatttggg 12278930  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12278929 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgac 12278871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 485 - 619
Target Start/End: Complemental strand, 31501862 - 31501728
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||    
T  31501862 gggctcgatcgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcgcacgca 31501763  T
Q  585 aataggtctcggaattttatatagcacactattga 619  Q
    ||||||||||| |||||||| ||||||||||||||    
T  31501762 aataggtctcgaaattttatttagcacactattga 31501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 13817977 - 13818136
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| ||    
T  13817977 ggcgaccccgggcggtcgctcggg-ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc 13818075  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||||||||||||||| |||| ||||| ||||||||||||||||||    
T  13818076 aatctgaaaattgtcacacgcaaataggtcttggaaatttatttagcacactattgacggg 13818136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 10033948 - 10034086
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||    
T  10033948 gggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgca 10034047  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  10034048 aataggtcttggaattttatttagcacactattgacggg 10034086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 39657652 - 39657514
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||   ||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||    
T  39657652 gggctcgattgataatttttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgca 39657553  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  39657552 aataggtcttggaattttatttagcacactattgacggg 39657514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 485 - 620
Target Start/End: Original strand, 16155018 - 16155153
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||| ||||||||||||||  |||||||||| ||| |||||||||    
T  16155018 gggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttaggcaatctgaaaattgtcacacgca 16155117  T
Q  585 aataggtctcggaattttatatagcacactattgac 620  Q
    ||||||||| |||||||||| |||||||||||||||    
T  16155118 aataggtcttggaattttatttagcacactattgac 16155153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 485 - 618
Target Start/End: Original strand, 43068898 - 43069031
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||| |||||||||| ||||| ||| | |    
T  43068898 gggctcgatcaataattttttcacattagacccaacccaaaagtccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattcttacatgta 43068997  T
Q  585 aataggtctcggaattttatatagcacactattg 618  Q
    |||| ||||||||||||||| |||||||||||||    
T  43068998 aataagtctcggaattttatttagcacactattg 43069031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 494 - 622
Target Start/End: Complemental strand, 16334013 - 16333885
Alignment:
Q  494 cgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaataggtct 593  Q
    |||||||||||||||||||||  |||| |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||||||||||||    
T  16334013 cgataatttttgcacattagattcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaaataggtct 16333914  T
Q  594 cggaattttatatagcacactattgacgg 622  Q
     |||||||||| |||||||||||||||||    
T  16333913 tggaattttatttagcacactattgacgg 16333885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 463 - 617
Target Start/End: Complemental strand, 36293788 - 36293635
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    |||||||||| || |||| || || |||||||||||||||||| ||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| ||    
T  36293788 ggcgaccccgagcggtcg-tccggactcgatcgataatttttgtacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc 36293690  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactatt 617  Q
    |||||||| ||| ||||||| |||||||||| |||||||||| ||||||||||||    
T  36293689 aatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactatt 36293635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 464 - 620
Target Start/End: Complemental strand, 26283484 - 26283329
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||| ||||| ||||| |||| |||||||||||||||||||||||||||| ||||  ||||||  ||||||||| ||| ||||||||||||||| |||    
T  26283484 gcgacctcgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggca 26283386  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  26283385 atctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 26283329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 465 - 616
Target Start/End: Complemental strand, 1776541 - 1776391
Alignment:
Q  465 cgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaa 564  Q
    ||||||||||| ||||| |||| |||||||||||||||||| |||||| |  ||||  ||||||| ||||||||| ||||||||||||||||||| ||||    
T  1776541 cgaccccgggcggtcgcccggg-ctcgatcgataatttttgtacattaaagtcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggcaa 1776443  T
Q  565 tctgaagattctcacacgcaaataggtctcggaattttatatagcacactat 616  Q
    | |||| ||| |||||||||||||||||| |||||||||| |||||||||||    
T  1776442 tttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactat 1776391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 463 - 620
Target Start/End: Original strand, 39434696 - 39434852
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    |||||||| |||| ||||| |||| ||||||||||||||||| |||||||||| |||| |||||| | ||||||||| |||||||| |||||||||| ||    
T  39434696 ggcgaccctgggcggtcgcccggg-ctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaatgaaaaatttgggc 39434794  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    |||||||| ||| ||||| | ||||||||||  ||||||||| |||||||||||||||    
T  39434795 aatctgaaaattgtcacatgtaaataggtctttgaattttatttagcacactattgac 39434852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 463 - 615
Target Start/End: Complemental strand, 3155798 - 3155647
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||| ||||||| |||||||||| ||||||| |||||||||||||||| ||| ||||  ||||||| ||||||||| ||| |||||||||||||||  |    
T  3155798 ggcgatcccgggcggtcgctcggg-ctcgatcaataatttttgcacattcgactcaacctaaaagtccattaacacatttataaaaagaaaaatttggac 3155700  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacacta 615  Q
    |||||||| ||| |||||||||||||| ||| |||||||||| ||||||||||    
T  3155699 aatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacacta 3155647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 487 - 620
Target Start/End: Original strand, 19985962 - 19986095
Alignment:
Q  487 gctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaa 586  Q
    ||||||||||||||||||||||||||||  |||| |||||||| |||| |||| ||||||||||||||||||| | ||||| || ||| |||||||||||    
T  19985962 gctcgatcgataatttttgcacattagattcaacccaaaagtccattagcacatttacaaaaagaaaaatttgggtaatctaaaaattatcacacgcaaa 19986061  T
Q  587 taggtctcggaattttatatagcacactattgac 620  Q
    ||||||| | |||||||| || ||||||||||||    
T  19986062 taggtcttgaaattttatttaacacactattgac 19986095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 489 - 623
Target Start/End: Original strand, 36291396 - 36291530
Alignment:
Q  489 tcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaata 588  Q
    |||||| ||||||||||||||||||| | |||  ||||||  ||||||||| ||||||||||||||||||| ||||||| || ||| | |||| ||||||    
T  36291396 tcgatcaataatttttgcacattagatctaacctaaaagttcattaacacatttacaaaaagaaaaatttgggcaatctcaaaattattacacacaaata 36291495  T
Q  589 ggtctcggaattttatatagcacactattgacggg 623  Q
    |||||| ||||||||| || |||||||||||||||    
T  36291496 ggtctcagaattttatttaacacactattgacggg 36291530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 486 - 590
Target Start/End: Original strand, 28801309 - 28801415
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaattt--gagcaatctgaagattctcacacgc 583  Q
    ||||||||||||||||||||||||||||| ||||  |||||| | ||||||||||||||||||||||||||||  ||  ||| |||| ||||||||||||    
T  28801309 ggctcgatcgataatttttgcacattagatccaaaccaaaagcccattaacacacttacaaaaagaaaaatttgggaaaaatatgaaaattctcacacgc 28801408  T
Q  584 aaatagg 590  Q
    |||||||    
T  28801409 aaatagg 28801415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 7e-60; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 45182980 - 45183140
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  45182980 cggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttggg 45183078  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| |||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  45183079 caatctgaaaattctcacacacaaataggtctcggaattttatttagcacactattgacggg 45183140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 33040952 - 33041112
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| |||||||||| |||||| ||||||||||||| |||||||||||| ||||||  |||||||||||||||||||||||||||||||     
T  33040952 cggcgaccccgggcggtcgctcggg-ctcgattgataatttttgcatattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttgaa 33041050  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||| |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33041051 caatttgaaaattttcacacgcaaataggtctcggaattttatttagcacactattgacggg 33041112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 11018357 - 11018220
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    |||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  11018357 ggctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgcaa 11018258  T
Q  586 ataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||||| |||||||| |||||||||    
T  11018257 ataggtctcagaattttatttagcacacaattgacggg 11018220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 462 - 621
Target Start/End: Complemental strand, 6931062 - 6930904
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||| | ||||| |||| ||||||||||||||||||| ||||||| ||||| |||||| ||||||||||| ||||||||||||||||||  |    
T  6931062 cggcgaccccggacggtcgcccggg-ctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacatttacaaaaagaaaaatttagg 6930964  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacg 621  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6930963 caatctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacg 6930904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 467 - 623
Target Start/End: Original strand, 27935182 - 27935337
Alignment:
Q  467 accccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatc 566  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||| ||||||| ||||||   ||||||||||||||||||||||||||||| ||||||    
T  27935182 accctgggcagtcgcccggg-ctcgatcgataatttttgcacattaaacccaacccaaaagctcattaacacacttacaaaaagaaaaatttgggcaatc 27935280  T
Q  567 tgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||| ||||||| ||| ||||||||||||||||||||| ||||| ||||||||||||    
T  27935281 tgaaaattctcatacgaaaataggtctcggaattttatttagcatactattgacggg 27935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 462 - 619
Target Start/End: Complemental strand, 6503737 - 6503581
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| |||||||||| ||||||||| ||||||| |||| |||||| |||||| ||||||||||||||||||||||| ||    
T  6503737 cggcgaccccgggcggtcgcccggg-ctcgatcgattatttttgcaaattagactcaacccaaaagccaattagcacacttacaaaaagaaaaatttaag 6503639  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    ||||||||| ||||||||| |||||||||||||||| |||||| |||||||| |||||    
T  6503638 caatctgaaaattctcacaggcaaataggtctcggatttttatttagcacacaattga 6503581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 463 - 620
Target Start/End: Original strand, 19390146 - 19390302
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| |||| || ||| ||||||||||||||||||||||||||| ||||  ||||||| ||||||||| ||||||||||||||||||| ||    
T  19390146 ggcgaccccgggcggtcg-tccgggttcgatcgataatttttgcacattagactcaacctaaaagtctattaacacatttacaaaaagaaaaatttgggc 19390244  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    |||||||| ||| ||||||| |||||||||| |||||||||| |||||||||||||||    
T  19390245 aatctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 19390302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 488 - 620
Target Start/End: Complemental strand, 6269569 - 6269437
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaat 587  Q
    |||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| ||||||| ||||    
T  6269569 ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaat 6269470  T
Q  588 aggtctcggaattttatatagcacactattgac 620  Q
    |||||| |||||||||| |||||||||||||||    
T  6269469 aggtcttggaattttatttagcacactattgac 6269437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 462 - 615
Target Start/End: Complemental strand, 19565669 - 19565517
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||| ||||||| ||||| ||||  || |||||||||||||||||||||||||||||  |||| || ||||||||| |||||||||||||||||||      
T  19565669 cggcgatcccgggcggtcgcccgggt-tcaatcgataatttttgcacattagacccaaccaaaaaatccattaacacatttacaaaaagaaaaatttgga 19565571  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacacta 615  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||    
T  19565570 caatctgaaaattcttacacgcaaataggtctcggaattttatttagcacacta 19565517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 464 - 620
Target Start/End: Complemental strand, 22968610 - 22968455
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| |||| || |||||||||||||||||||||||||||||||  ||| |||||| | ||||||||| ||||||||||||||||||| |||    
T  22968610 gcgaccccgggcggtcg-tccgggctcgatcgataatttttgcacattagacttaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 22968512  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    |||| || ||| ||||||| |||||||||| | |||||||| |||||||||||||||    
T  22968511 atctaaaaattgtcacacgtaaataggtcttgaaattttatttagcacactattgac 22968455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 463 - 619
Target Start/End: Complemental strand, 34084289 - 34084134
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||  ||||||||||||||||||||||||| |  ||||  ||||||| ||||||||| ||||||||||||||||||| ||    
T  34084289 ggcgaccccgggcggtcgcccgga-ctcgatcgataatttttgcacattaaattcaaccaaaaagtccattaacacatttacaaaaagaaaaatttgggc 34084191  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    ||| |||| ||| |||||||||||||||||| |||||||||| ||||||||||||||    
T  34084190 aatatgaaaattatcacacgcaaataggtcttggaattttatttagcacactattga 34084134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 462 - 615
Target Start/End: Original strand, 45335874 - 45336025
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||| ||||| ||||| |||  ||| ||||||||||||| |||||||||||||||  |||||||| |||||||| |||||||||||||||| || |    
T  45335874 cggcgacctcgggcggtcgcccgga-ctcaatcgataatttttacacattagacccaaccaaaaagtca-ttaacacatttacaaaaagaaaaatctggg 45335971  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacacta 615  Q
    ||||||||| ||||| |||||||||||||||| |||||||||| ||||||||||    
T  45335972 caatctgaaaattcttacacgcaaataggtcttggaattttatttagcacacta 45336025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 39771791 - 39771946
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||| ||||||||||||||||||||||| |||| |||||| | ||||||||| ||| ||||||||||||||| |||    
T  39771791 gcgaccccgggcggtcgcccggg-ctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggca 39771889  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| |||||||||| | |||||||| |  ||||||||||||    
T  39771890 atctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 39771946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 35514265 - 35514421
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||| | |||| || ||||||||||||||||||| ||| | |||| ||||| |||||||| ||||||||||    |||||||||||||||      
T  35514265 cggcgaccccggacggtcg-tccgggctcgatcgataattttcgcatactagatccaacccaaaagtccattaacacac----aaaaagaaaaatttgga 35514359  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||| |||| |||||||| ||||||||||||| |||||||||| | ||||||||||||||||    
T  35514360 caatatgaaaattctcactcgcaaataggtctaggaattttattttgcacactattgacggg 35514421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 40081885 - 40081749
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||   ||||||||| ||||||||||||||||||| ||||| |||| ||| |||||||||    
T  40081885 gggctcgatcgataatttttgaacattagactcaac-caaaagctcattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgca 40081787  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||| ||| || ||||| | ||||||||||||||||||    
T  40081786 aatagatcttgg-attttttttagcacactattgacggg 40081749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 486 - 590
Target Start/End: Original strand, 5135291 - 5135397
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc--aatctgaagattctcacacgc 583  Q
    |||||||||||| ||||||| ||||||||||||||  |||||   |||||||||||||||||||||||||||||  |  |||| ||| |||||||||| |    
T  5135291 ggctcgatcgattatttttgtacattagacccaacctaaaagctcattaacacacttacaaaaagaaaaatttggacaaaatccgaaaattctcacacac 5135390  T
Q  584 aaatagg 590  Q
    |||||||    
T  5135391 aaatagg 5135397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 512
Target Start/End: Original strand, 22922157 - 22922205
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacatta 512  Q
    ||||| ||||||| |||||||||| |||||||||| ||||||||||||||    
T  22922157 ggcgatcccgggcggtcgctcggg-ctcgatcgatcatttttgcacatta 22922205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 1e-58; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 466 - 621
Target Start/End: Complemental strand, 3293060 - 3292906
Alignment:
Q  466 gaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaat 565  Q
    |||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||    
T  3293060 gaccccgggcggtcgcccggg-ctcgatcgataatttttgcccattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaat 3292962  T
Q  566 ctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacg 621  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  3292961 ctgaaaattctcacacgcaaataggtctcggaattttatttagcacactattgacg 3292906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 6690403 - 6690243
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  6690403 cggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttggg 6690305  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||| ||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  6690304 caaactgaaaattctcacacgcaaataggtctcgaaattttatttagcacactattgacggg 6690243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 30216910 - 30216750
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||||||| |    
T  30216910 cggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagacccaacccaaaagctaattaacacacttacaaaaagaaaaatttggg 30216812  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||||    
T  30216811 caatctgaaaattctcacatgcaaatagatctcggaattttatttagcacactattgacggg 30216750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 465 - 619
Target Start/End: Complemental strand, 43143749 - 43143596
Alignment:
Q  465 cgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaa 564  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  43143749 cgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggcaa 43143651  T
Q  565 tctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  43143650 tctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 43143596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 489 - 623
Target Start/End: Original strand, 48989353 - 48989487
Alignment:
Q  489 tcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaata 588  Q
    |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||    
T  48989353 tcgatcgataatttttgcacattaaacccaactcaaaagtccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcatacgcaaata 48989452  T
Q  589 ggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||| ||||||||||||||||||    
T  48989453 ggtctcggaattttatttagcacactattgacggg 48989487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 464 - 619
Target Start/End: Complemental strand, 42333942 - 42333788
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||| ||||||| |||| || |||||| |||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||    
T  42333942 gcgatcccgggcggtcg-tccgggctcaatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttgggca 42333844  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  42333843 atctgaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 42333788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 50205245 - 50205085
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||| ||||||| ||||| || | ||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||| |||      
T  50205245 cggcgatcccgggcggtcgcccgag-ctcgatcgataatttttgcacattagatccaacccaaaagccaattaacacacttacaaaaagaaaaaattgga 50205147  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  50205146 caatctgaaaattctcacacgcaaataggtcttggaattttatttagcacactattgacggg 50205085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 44156672 - 44156810
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||| | ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||  ||||||||| |||||| ||||||    
T  44156672 gggctcaaccgataatttttgcacattagacccaacccaaaagccaattaacacacttacaaaaagaaaattttggacaatctgaaaattctctcacgca 44156771  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  44156772 aataggtctcggaattttatttagcacactattgacggg 44156810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 462 - 613
Target Start/End: Complemental strand, 10353052 - 10352902
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||| ||| ||||| |||| ||| |||||||||||||||||||||||||||||  ||||||| ||||||||| |||||||| |||||||||| |    
T  10353052 cggcgacccctggcggtcgcccggg-ctcaatcgataatttttgcacattagacccaaccaaaaagtccattaacacatttacaaaaggaaaaatttggg 10352954  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacac 613  Q
    ||||||||| ||||| ||||||||||||||||||||||||||| ||||||||    
T  10352953 caatctgaaaattcttacacgcaaataggtctcggaattttatttagcacac 10352902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 29319850 - 29319713
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    |||||||||||||||||||||||||||||| |||| |||||  | ||||||||| |||||||||||||||||||||||||||||| ||| |||||| |||    
T  29319850 ggctcgatcgataatttttgcacattagactcaacccaaaatcccattaacacatttacaaaaagaaaaatttgagcaatctgaaaattgtcacacacaa 29319751  T
Q  586 ataggtctcggaattttatatagcacactattgacggg 623  Q
    ||| |||| |||||||||| ||||||||||||||||||    
T  29319750 ataagtcttggaattttatttagcacactattgacggg 29319713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 20129311 - 20129466
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||    
T  20129311 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggca 20129409  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| ||||||||||  ||||||||| | |||||||||||||    
T  20129410 atctgaaaattgtcacacgtaaataggtcttagaattttatttggcacactattgac 20129466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 25930708 - 25930867
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    |||||||| |||| ||||| |||| ||||||| ||||||||||||||||| || |||| |||||| | ||||||||| ||||||||||||||||||| ||    
T  25930708 ggcgaccctgggcggtcgcccggg-ctcgatctataatttttgcacattaaactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc 25930806  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||| |||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  25930807 aatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacggg 25930867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 488 - 619
Target Start/End: Original strand, 35545977 - 35546108
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaat 587  Q
    ||||||||| ||||||||| ||| ||||||||| |||||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  35545977 ctcgatcgacaatttttgcgcatcagacccaacccaaaagccaattaacacacttacaaaaagaaaattttgggcaatctgaaaattctcacacgcaaat 35546076  T
Q  588 aggtctcggaattttatatagcacactattga 619  Q
     |||||| ||||||||| ||||||||||||||    
T  35546077 gggtctctgaattttatttagcacactattga 35546108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 463 - 623
Target Start/End: Complemental strand, 36382512 - 36382354
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| ||||||| ||||||||||||||||| || ||||  ||||||| ||||||||| |||||||| ||||||||||  |    
T  36382512 ggcgaccccgggcggtcgcccggg-ctcgatccataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttggac 36382415  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  36382414 aatctgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacggg 36382354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 47763898 - 47763659
Alignment:
Q  9 ttttggtcgttcatgaatatttcatatctcgtattttaatttgatttaatcaaaggtcattgaagcgtgttcattttgttcatattcatga-tgatgaag 107  Q
    ||||| || ||||||||||||||||||||| ||||| |||| || |||||||||||||||||||    | ||||||||||||| ||||||| |||| | |    
T  47763898 ttttgatcattcatgaatatttcatatctcatatttcaattcgacttaatcaaaggtcattgaaatacgctcattttgttcatgttcatgaatgattagg 47763799  T
Q  108 aatagaaggattggaagatattgtgctcatgcttcaatgacctggcatggaagaaatgcttttttgctgtcgtgatgactgatgatagtcaatgaatatg 207  Q
    ||||||||||||||||||  |||| ||||| |||||||||||||||||||| | ||||||| ||||||| ||        ||||||||| | ||||||||    
T  47763798 aatagaaggattggaagacgttgtactcatacttcaatgacctggcatggatggaatgcttctttgctgccg-------cgatgatagtgagtgaatatg 47763706  T
Q  208 aaccaaattgaattaatcggcaatcaatttcttttgtcttgtttgtt 254  Q
    ||||||||  |||| |   ||||||||| ||||||||||||| ||||    
T  47763705 aaccaaatcaaattgactagcaatcaatgtcttttgtcttgtctgtt 47763659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 488 - 618
Target Start/End: Original strand, 26448077 - 26448206
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaat 587  Q
    ||||||||||||||||||||||||| | | ||| |||||||| ||||||||||||||||||| ||||||||| |||||||||| ||||||| || |||||    
T  26448077 ctcgatcgataatttttgcacattaaatctaacccaaaagtccattaacacacttacaaaaa-aaaaatttgggcaatctgaaaattctcatacacaaat 26448175  T
Q  588 aggtctcggaattttatatagcacactattg 618  Q
    |||| |||||||||||| |||||||||||||    
T  26448176 aggtttcggaattttatttagcacactattg 26448206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 485 - 619
Target Start/End: Complemental strand, 28877396 - 28877262
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||| ||||||||||||||||||||||||  ||||  |||||  ||||||||| |||| ||||||||||||||| | ||||| || |||||||||||||    
T  28877396 gggctagatcgataatttttgcacattagattcaacctaaaagctaattaacacgcttataaaaagaaaaatttgggaaatctaaaaattctcacacgca 28877297  T
Q  585 aataggtctcggaattttatatagcacactattga 619  Q
    |||||||||||||||||||| ||||||||||||||    
T  28877296 aataggtctcggaattttatttagcacactattga 28877262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 488 - 622
Target Start/End: Complemental strand, 29996126 - 29995992
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaat 587  Q
    |||||||||||||||||| ||||||||| ||||  ||||||| ||||||||| |||| |||||||||||||| |||||||||| |||||  |||||||||    
T  29996126 ctcgatcgataatttttgtacattagactcaaccaaaaagtccattaacacatttacgaaaagaaaaatttgggcaatctgaaaattcttgcacgcaaat 29996027  T
Q  588 aggtctcggaattttatatagcacactattgacgg 622  Q
    || ||||||||||||||  ||||||||||||||||    
T  29996026 agttctcggaattttattaagcacactattgacgg 29995992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 620
Target Start/End: Complemental strand, 26439445 - 26439290
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||| ||||||||||||||||||||||| |||| |||||| | ||||||||| ||| ||||||||||||||| |||    
T  26439445 gcgaccccgggcggtcgcccggg-ctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggca 26439347  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| |||||||||| | |||||||| |  ||||||||||||    
T  26439346 atctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 26439290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 620
Target Start/End: Complemental strand, 34407450 - 34407295
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||| ||||||||||||||||||||||| |||| |||||| | ||||||||| ||| ||||||||||||||| |||    
T  34407450 gcgaccccgggcggtcgcccggg-ctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggca 34407352  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| |||||||||| | |||||||| |  ||||||||||||    
T  34407351 atctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 34407295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 43355905 - 43356060
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||| ||||||||| |||| |||| ||||||||||||||||||||||| |||| |||||| | ||||||||| ||| ||||||||||||||| |||    
T  43355905 gcgaccccaggcagtcgcccggg-ctcggtcgataatttttgcacattagactcaacccaaaagcccattaacacatttataaaaagaaaaatttgggca 43356003  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| |||||||||| | |||||||| |  ||||||||||||    
T  43356004 atctgaaaattgtcacacgtaaataggtcttgaaattttatttgacacactattgac 43356060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 13012189 - 13012344
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||  ||||  |||||   ||||||||| ||| ||||||||||||||| |||    
T  13012189 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagattcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggca 13012287  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    || |||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  13012288 atttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 13012344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 488 - 619
Target Start/End: Complemental strand, 17511377 - 17511245
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaat 587  Q
    |||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| ||||| |||| ||| | ||||||||||    
T  17511377 ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgttacacgcaaat 17511278  T
Q  588 aggtctcgg-aattttatatagcacactattga 619  Q
    |||||| || |||||||| ||||||| ||||||    
T  17511277 aggtcttggaaattttatttagcacattattga 17511245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 47500774 - 47500929
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||  |||||   ||||||||| |||  |||||||||||||| |||    
T  47500774 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttatgaaaagaaaaatttgggca 47500872  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    || |||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  47500873 atttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 47500929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 522 - 623
Target Start/End: Original strand, 6235578 - 6235679
Alignment:
Q  522 caaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacg 621  Q
    |||||||| ||||||||| ||||||||||||||||||| ||||| |||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  6235578 caaaagtccattaacacatttacaaaaagaaaaatttgggcaatttgaaaattgtcacacgcaaataggtcttggaattttatttagcacactattgacg 6235677  T
Q  622 gg 623  Q
    ||    
T  6235678 gg 6235679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 488 - 623
Target Start/End: Original strand, 40529039 - 40529174
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaac-tcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaa 586  Q
    ||||||||||||||||||||||||| || |||| | |||| ||| |||||||| |||||||||||||||||||  |||| |||| ||| ||||| |||||    
T  40529039 ctcgatcgataatttttgcacattaaactcaacctaaaaactca-ttaacacatttacaaaaagaaaaatttggacaatttgaaaattgtcacatgcaaa 40529137  T
Q  587 taggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||| |||||||||| ||||||||||||||||||    
T  40529138 taggtcttggaattttatttagcacactattgacggg 40529174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 499 - 618
Target Start/End: Original strand, 1817752 - 1817871
Alignment:
Q  499 atttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaataggtctcggaa 598  Q
    |||||||||||||||| ||||  |||||||| ||||| ||| ||| ||||||||||||||| ||||||| || ||||| |||||||||||||||||||||    
T  1817752 atttttgcacattagatccaatccaaaagtccattaatacatttataaaaagaaaaatttgggcaatctaaaaattcttacacgcaaataggtctcggaa 1817851  T
Q  599 ttttatatagcacactattg 618  Q
    |||||| || ||||||||||    
T  1817852 ttttatttaacacactattg 1817871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 486 - 615
Target Start/End: Complemental strand, 30077776 - 30077647
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    ||||| |||||||| ||||||||||||||||||||  ||||||  ||||||||| |||||||||||||||||||  ||||||||| ||| | |||| |||    
T  30077776 ggctcaatcgataaattttgcacattagacccaaccaaaaagttcattaacacatttacaaaaagaaaaatttggacaatctgaaaatttttacacacaa 30077677  T
Q  586 ataggtctcggaattttatatagcacacta 615  Q
    |||||||| | |||||||| ||||||||||    
T  30077676 ataggtcttgaaattttatttagcacacta 30077647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 338 - 452
Target Start/End: Complemental strand, 47763545 - 47763430
Alignment:
Q  338 aggaaaacctaactgttggtagtgggg-ttaaagattgtgtgccggaatatgtagatgttctcatttttatatctaaaaaatcttagccattaataagat 436  Q
    |||||||||||||| |||  ||||||| ||||||||||||||| ||||| ||||| ||||||||||||||||| | |||||| ||| ||||| |||||||    
T  47763545 aggaaaacctaactattgacagtgggggttaaagattgtgtgcaggaatgtgtaggtgttctcatttttatatatgaaaaatattaaccattgataagat 47763446  T
Q  437 ctgatggtatattttt 452  Q
    |||||| |||||||||    
T  47763445 ctgatgatatattttt 47763430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 542 - 619
Target Start/End: Complemental strand, 13392970 - 13392893
Alignment:
Q  542 tacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13392970 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 542 - 619
Target Start/End: Complemental strand, 13396109 - 13396032
Alignment:
Q  542 tacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    |||||||||||||||||| ||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13396109 tacaaaaagaaaaatttgggcaatctaaaaattctcacacgcaaataggtctcgaaattttatttagcacactattga 13396032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 485 - 559
Target Start/End: Original strand, 48129987 - 48130061
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttg 559  Q
    ||||||||||||||||||||||| |||||||||||| ||||||   |||||||||||||||||||||||||||||    
T  48129987 gggctcgatcgataatttttgcatattagacccaacccaaaagctcattaacacacttacaaaaagaaaaatttg 48130061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 488 - 590
Target Start/End: Original strand, 30109980 - 30110084
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc--aatctgaagattctcacacgcaa 585  Q
    ||||||||||||||||||||||||||||||||  | |||| | |||||||||||||||||||||||||||||  |  ||| |||| | ||||||||||||    
T  30109980 ctcgatcgataatttttgcacattagacccaaacccaaagaccattaacacacttacaaaaagaaaaatttggacaaaatatgaaaaatctcacacgcaa 30110079  T
Q  586 atagg 590  Q
    |||||    
T  30110080 atagg 30110084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 489 - 557
Target Start/End: Original strand, 6254569 - 6254637
Alignment:
Q  489 tcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatt 557  Q
    |||||||||||||||||||||||| ||||||| |||||| |||||||||||||| |||||| |||||||    
T  6254569 tcgatcgataatttttgcacattaaacccaacccaaaagacaattaacacacttgcaaaaaaaaaaatt 6254637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 488 - 554
Target Start/End: Original strand, 45194200 - 45194266
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaa 554  Q
    ||||||| ||||||||||||||||| || |||| |||||||| ||||||||||||||||||| ||||    
T  45194200 ctcgatcaataatttttgcacattaaactcaacccaaaagtccattaacacacttacaaaaaaaaaa 45194266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 549
Target Start/End: Original strand, 27363361 - 27363446
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaa 549  Q
    ||||||| ||||| ||||| |||| |||||||||   |||||||| ||||| |||||| |||||| | |||||||||||||||||||    
T  27363361 ggcgacctcgggcggtcgcccggg-ctcgatcgaatttttttgcatattaggcccaacccaaaagcccattaacacacttacaaaaa 27363446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 8147350 - 8147511
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  8147350 cggcgaccccgggcggtcgcccggg-ctcgatcgataatctttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttggg 8147448  T
Q  562 caatctg-aagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||| || |||||||||||||||||| |||||||||||||| || |||||||||||||||    
T  8147449 caatctgaaaaattctcacacgcaaatagatctcggaattttatttaacacactattgacggg 8147511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 462 - 623
Target Start/End: Original strand, 45418582 - 45418742
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |    
T  45418582 cggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcgcattagatccaacccaaaagccaattaacacacttacaaaaagaaaaatttggg 45418680  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  45418681 caatctgaaaattctcacacgcaaataggtctctgaattttatttagcacactattgacggg 45418742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 489 - 623
Target Start/End: Complemental strand, 12756979 - 12756845
Alignment:
Q  489 tcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaata 588  Q
    |||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12756979 tcgatcgataatttttgcgcattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttgagcaatctgaaaattctcacacgcaaata 12756880  T
Q  589 ggtctcggaattttatatagcacactattgacggg 623  Q
     ||||||||||||||| ||||||||||||||||||    
T  12756879 agtctcggaattttatttagcacactattgacggg 12756845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 44084771 - 44084611
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||  |||||||  ||||||||||||||||||||||||||||| |    
T  44084771 cggcgaccccgggcagtcgcccggg-ctcgatcgataatttttgcacattaaacccaatccaaaagttcattaacacacttacaaaaagaaaaatttggg 44084673  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| ||||||| ||||||||||||||| ||||||||| ||||||||||||||||||    
T  44084672 caatctgaaaattctcatacgcaaataggtctcagaattttatttagcacactattgacggg 44084611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 771020 - 771158
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||| ||||||||||||||||||||  ||||| | ||||||||||||||||||||||||||||| |||||||||| |||||||||||||    
T  771020 gggctcgatcgataacttttgcacattagacccaaccaaaaagcccattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacacgca 771119  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||| ||||| ||||||| ||||||||||    
T  771120 aataggtctcggaactttatttagcacattattgacggg 771158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 463 - 622
Target Start/End: Original strand, 42439986 - 42440144
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||  ||| |||||| | ||||||||| ||||||||||||||||||| ||    
T  42439986 ggcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactaaacccaaaagcccattaacacatttacaaaaagaaaaatttgggc 42440084  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacgg 622  Q
    |||||||| ||| |||||||||||||||||| | |||||||| |||||||||||||||||    
T  42440085 aatctgaaaattgtcacacgcaaataggtcttgcaattttatttagcacactattgacgg 42440144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 466 - 620
Target Start/End: Complemental strand, 41251798 - 41251645
Alignment:
Q  466 gaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaat 565  Q
    |||||||||| ||||| |||| |||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||||    
T  41251798 gaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaat 41251700  T
Q  566 ctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||| ||| ||||||| |||||||||| |||||||||| |||||||||||||||    
T  41251699 ctgaaaattgtcacacgtaaataggtcttggaattttatttagcacactattgac 41251645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 35962715 - 35962874
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||| ||| |||| || ||||||||||||||||||||||||||||||| |||| ||||||   ||||||||| |||||||||||||| |||| ||    
T  35962715 ggcgaccccaggcggtcg-tccgggctcgatcgataatttttgcacattagactcaacccaaaagcttattaacacatttacaaaaagaaaattttgggc 35962813  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||| ||||||||||| |||||||||| ||||||||||||||||||    
T  35962814 aatctgaaaattgtcacacacaaataggtcttggaattttatttagcacactattgacggg 35962874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 8059478 - 8059341
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    ||||| |||||||||||||||||||||||  |||| |||||| |||||||||||||||||||||||||||||||  |||| |||| |||||||||| |||    
T  8059478 ggctcaatcgataatttttgcacattagagtcaacccaaaagccaattaacacacttacaaaaagaaaaatttggccaatttgaaaattctcacacacaa 8059379  T
Q  586 ataggtctcggaattttatatagcacactattgacggg 623  Q
    || |||||||||||||||| |||||||| |||||||||    
T  8059378 atcggtctcggaattttatttagcacacaattgacggg 8059341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 464 - 620
Target Start/End: Complemental strand, 6403970 - 6403815
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||  ||||||  ||||||||| ||| ||||||||||||||| |||    
T  6403970 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagttcattaacacatttataaaaagaaaaatttgggca 6403872  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  6403871 atctgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 6403815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 18981637 - 18981775
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||| ||||||||||||||||||||| |||| |||||||| ||||| ||| ||||||||||||||||||| ||||| | || ||| |||||||||    
T  18981637 gggctcgattgataatttttgcacattagactcaacccaaaagtccattaaaacatttacaaaaagaaaaatttgggcaatttaaaaattgtcacacgca 18981736  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    ||||||||| |||||||||| ||||||||| ||||||||    
T  18981737 aataggtcttggaattttatttagcacactgttgacggg 18981775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 486 - 623
Target Start/End: Complemental strand, 31581767 - 31581630
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    ||||||| ||||| |||||||| ||||||| || | |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||||    
T  31581767 ggctcgagcgatactttttgcatattagactcatcccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgcaa 31581668  T
Q  586 ataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  31581667 ataggtcttggaattttatttagcacactattgacggg 31581630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 489 - 621
Target Start/End: Original strand, 2285887 - 2286019
Alignment:
Q  489 tcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaata 588  Q
    |||||||||||||||||||||||| | |||||  ||||||| ||||||||| |||| ||| ||||||||||||||||||||| ||| |||||||||||||    
T  2285887 tcgatcgataatttttgcacattaaatccaaccaaaaagtctattaacacatttacgaaaggaaaaatttgagcaatctgaaaattgtcacacgcaaata 2285986  T
Q  589 ggtctcggaattttatatagcacactattgacg 621  Q
    ||| | |||||||||| ||||||||||||||||    
T  2285987 ggttttggaattttatttagcacactattgacg 2286019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 463 - 623
Target Start/End: Complemental strand, 32127308 - 32127149
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| ||||||| ||||||||||||||||| || | || ||||||   ||||||||| ||||||||||||||||||  ||    
T  32127308 ggcgaccccgggcggtcgcccggg-ctcgatcaataatttttgcacattaaactcgacccaaaagctcattaacacatttacaaaaagaaaaatttaggc 32127210  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||||||||||| ||| |||||||||| ||||||||||||||||||    
T  32127209 aatctgaaaattgtcacacgcaaatagatcttggaattttatttagcacactattgacggg 32127149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 487 - 620
Target Start/End: Complemental strand, 17445183 - 17445052
Alignment:
Q  487 gctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaa 586  Q
    ||||||||||||||||||||||  ||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| ||||||| |||    
T  17445183 gctcgatcgataatttttgcac--tagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacacgtaaa 17445086  T
Q  587 taggtctcggaattttatatagcacactattgac 620  Q
    ||||||| |||||||||| |||||||||||||||    
T  17445085 taggtcttggaattttatttagcacactattgac 17445052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 16405621 - 16405759
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||   ||||||||| ||| |||||||||||||||  ||||||||| ||| |||||||||    
T  16405621 gggctcaatcgataatttttgcacgttagactcaacccaaaagctcattaacacatttataaaaagaaaaatttggacaatctgaaaattgtcacacgca 16405720  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||| |||| |||||||||| ||||||||||||||||||    
T  16405721 aataagtcttggaattttatttagcacactattgacggg 16405759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 463 - 601
Target Start/End: Complemental strand, 2958267 - 2958131
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| |||| || ||||||||||||||||||| ||||||||||| |||| |||||| | ||||||||| ||||||| ||||||||||| |     
T  2958267 ggcgaccccgggcggtcg-tccgggctcgatcgataatttt-gcacattagactcaacccaaaagcccattaacacatttacaaagagaaaaatttgggt 2958170  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattt 601  Q
    |||||||| ||| |||||||||||||||||| |||||||    
T  2958169 aatctgaaaattgtcacacgcaaataggtcttggaattt 2958131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 493 - 623
Target Start/End: Complemental strand, 26162837 - 26162710
Alignment:
Q  493 tcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaataggtc 592  Q
    |||||||||||| ||||||| |  |||| |||||  | ||||||||||||||||||||||||||||| ||||||| || ||||||| || ||||||||||    
T  26162837 tcgataatttttacacattaaattcaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaatctaaaaattctcaaacacaaataggtc 26162738  T
Q  593 tcggaattttatatagcacactattgacggg 623  Q
    |||||   |||| ||||||| ||||||||||    
T  26162737 tcgga---ttatttagcacattattgacggg 26162710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 462 - 564
Target Start/End: Original strand, 26237956 - 26238056
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||| |||||||| ||||||  |||  |||||||| ||||||||||||||||||||||||||||| |    
T  26237956 cggcgaccccgggcggtcgcccggg-ctcgatcgata-tttttgcaaattagatgcaaaccaaaagtccattaacacacttacaaaaagaaaaatttggg 26238053  T
Q  562 caa 564  Q
    |||    
T  26238054 caa 26238056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 488 - 590
Target Start/End: Complemental strand, 4555354 - 4555250
Alignment:
Q  488 ctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc--aatctgaagattctcacacgcaa 585  Q
    ||||||||||||||||||||||| | ||||||| ||||||    ||||||||||||||||||||||| |||| ||  |||||||| ||||||||||| ||    
T  4555354 ctcgatcgataatttttgcacatcaaacccaacccaaaagctcgttaacacacttacaaaaagaaaattttgggcaaaatctgaaaattctcacacgtaa 4555255  T
Q  586 atagg 590  Q
    |||||    
T  4555254 atagg 4555250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 543
Target Start/End: Original strand, 34905970 - 34906028
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacactta 543  Q
    ||||||||||||||||||||||||||||  || ||| |||||| | |||||||||||||    
T  34905970 gggctcgatcgataatttttgcacattaagcctaacccaaaagcccattaacacactta 34906028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 485 - 554
Target Start/End: Complemental strand, 7072698 - 7072627
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaatta--acacacttacaaaaagaaaa 554  Q
    ||||||||||||||||||||  |||||| || |||| |||||| | ||||  ||||||||| ||||||||||    
T  7072698 gggctcgatcgataatttttttacattaaactcaacccaaaagcccattaacacacacttataaaaagaaaa 7072627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 463 - 619
Target Start/End: Complemental strand, 34136992 - 34136837
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    |||||||||| || ||||| |||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||    
T  34136992 ggcgaccccgagcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggc 34136894  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||| |||||    
T  34136893 aatctgaaaattctcacacgcaaataggtctcgaaattttatttagcacacaattga 34136837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 462 - 620
Target Start/End: Original strand, 23402107 - 23402264
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| ||||| |||| ||||||||||||| |||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| |    
T  23402107 cggcgaccccgggcggtcgcccggg-ctcgatcgataatctttgcatattagacccaacccaaaagccaattaacacacttacaaaaagaaaaatttggg 23402205  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    ||||||||| |||||||||||||||||||||||| |||||||| || ||||||||||||    
T  23402206 caatctgaaaattctcacacgcaaataggtctcgaaattttatttaacacactattgac 23402264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 462 - 623
Target Start/End: Complemental strand, 16788193 - 16788033
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||| ||||||||| ||||| |||| |||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |    
T  16788193 cggcaaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagccaattaacacacttacaaaaagaaaaatttggg 16788095  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||| || | |||||||||||||||||||| |||||||||| ||||||||||||||||||    
T  16788094 caatcttaaaactctcacacgcaaataggtcttggaattttatttagcacactattgacggg 16788033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 462 - 619
Target Start/End: Original strand, 4404007 - 4404163
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||| ||| ||||| |||| |||||||||||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||||||| |    
T  4404007 cggcgaccccaggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaacccaaaagccaattaacatacttacaaaaagaaaaatttggg 4404105  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||||||| |||||    
T  4404106 caatctaaaaattctcacacgcaaataggtctcggaattttatttagcacacaattga 4404163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 486 - 618
Target Start/End: Original strand, 9877242 - 9877374
Alignment:
Q  486 ggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaa 585  Q
    |||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||    
T  9877242 ggctcgattgataatttttgcacattagacctaacccaaaagtcaattaacacacttacaaaaagaaaaatttgggcaatctgaaaattctcacatgcaa 9877341  T
Q  586 ataggtctcggaattttatatagcacactattg 618  Q
    |||||||||| |||||||| |||||||||||||    
T  9877342 ataggtctcgaaattttatttagcacactattg 9877374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 15838286 - 15838444
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||| | |||| |||||| |||||||||||||||||| || ||||  ||||||| ||||||||| |||||||| |||||||||| ||    
T  15838286 ggcgaccccgggcggtcacccggg-ctcgattgataatttttgcacattaaactcaaccaaaaagtccattaacacatttacaaaa-gaaaaatttgggc 15838383  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||| |||||||||||||||||| |||||||||| ||||||||||||||||||    
T  15838384 aatctgaaaattttcacacgcaaataggtcttggaattttatttagcacactattgacggg 15838444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 485 - 623
Target Start/End: Complemental strand, 3648940 - 3648802
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    |||||||||||||||||||| |||||||||| |||| |||||| | ||||||||| |||||||||||||| |||| |||||||||| ||| |||||||||    
T  3648940 gggctcgatcgataattttttcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaattttgggcaatctgaaaattgtcacacgca 3648841  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    | ||||| | |||||||||| ||||||||||||||||||    
T  3648840 agtaggttttggaattttatttagcacactattgacggg 3648802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 487 - 623
Target Start/End: Complemental strand, 29728530 - 29728394
Alignment:
Q  487 gctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaa 586  Q
    ||||||||||||| ||||||||||||||| |||| ||||||   ||||||||| ||||||||||||||||||| |||||||||| ||| | |||||||||    
T  29728530 gctcgatcgataaattttgcacattagactcaacccaaaagctcattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtgacacgcaaa 29728431  T
Q  587 taggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||  ||||||||| ||||||||||||||||||    
T  29728430 taggtcttcgaattttatttagcacactattgacggg 29728394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 462 - 618
Target Start/End: Original strand, 36408550 - 36408705
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||| ||||| ||||| |||| ||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||||||||||| |||  |    
T  36408550 cggcgacctcgggcggtcgcccggg-ctcgatcgataatttttgcacattagatccaacccaaaagtccattaacacatttacaaaaagaaaatttttgg 36408648  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattg 618  Q
    |||| |||| ||||| |||||| |||||||||| ||||||||| || ||||||||||    
T  36408649 caatttgaaaattcttacacgctaataggtctcagaattttatttaacacactattg 36408705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 496 - 622
Target Start/End: Original strand, 42230971 - 42231095
Alignment:
Q  496 ataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgcaaataggtctcg 595  Q
    ||||||||||||||||| | |||||||||||||| ||||||||  ||||||||||||||||||| ||||| |||| ||||||| | |||||||||||||     
T  42230971 ataatttttgcacattaaatccaactcaaaagtccattaacac--ttacaaaaagaaaaatttgggcaatttgaaaattctcatatgcaaataggtctca 42231068  T
Q  596 gaattttatatagcacactattgacgg 622  Q
    ||||||||| |||||||||||||||||    
T  42231069 gaattttatttagcacactattgacgg 42231095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 485 - 590
Target Start/End: Original strand, 3435290 - 3435397
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc--aatctgaagattctcacacg 582  Q
    ||||| |||||||||||||||||||||||||||||| |||||  | ||||||||||||||||||||||||||||| ||  |||||||| ||||||| |||    
T  3435290 gggcttgatcgataatttttgcacattagacccaacccaaaaacccattaacacacttacaaaaagaaaaatttgggcaaaatctgaaaattctcaaacg 3435389  T
Q  583 caaatagg 590  Q
    ||||||||    
T  3435390 caaatagg 3435397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 39914516 - 39914670
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||  |||||   ||||||||| ||| ||||| ||||||||| |||    
T  39914516 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaa-aaaaatttgggca 39914613  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    || |||| ||| ||||| | |||||||||| |||||||||| | |||||||||||||    
T  39914614 atttgaaaattgtcacaagtaaataggtcttggaattttatttggcacactattgac 39914670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 462 - 619
Target Start/End: Complemental strand, 2729364 - 2729208
Alignment:
Q  462 cggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgag 561  Q
    |||||||||||||| | ||| |||| ||||||||||||||||| ||||||| | ||||  |||||| | ||||||||||||| |||||||||  |||  |    
T  2729364 cggcgaccccgggcggacgcccggg-ctcgatcgataatttttacacattaaatccaatccaaaagcccattaacacacttataaaaagaaattttttgg 2729266  T
Q  562 caatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattga 619  Q
    |||| |||| | ||||| |||||||||||||||  |||||||| ||||||||||||||    
T  2729265 caatttgaaaactctcatacgcaaataggtctcaaaattttatttagcacactattga 2729208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 487 - 557
Target Start/End: Complemental strand, 40470637 - 40470567
Alignment:
Q  487 gctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatt 557  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||    
T  40470637 gctcgatcgataatttttgcacattagacccaaatcaaaagtccattaacacacttataaaaaaaaaaatt 40470567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0502 (Bit Score: 105; Significance: 4e-52; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 463 - 623
Target Start/End: Original strand, 5230 - 5389
Alignment:
Q  463 ggcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagc 562  Q
    ||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||   ||||| |||||||||||||||||||||||||| |||| ||    
T  5230 ggcgaccccgggcggtcgcccggg-ctcgatcaataatttttgcacattagacccaatctaaaagccaattaacacacttacaaaaagaaaattttgggc 5328  T
Q  563 aatctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  5329 aatctgaaaattctcacatgcaaataggtctcggaattttatttagcacactattgacggg 5389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 485 - 623
Target Start/End: Original strand, 52946 - 53084
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||||||||   ||| |||||| ||||||||||| |||||||||||||||||||  ||||||||| ||||||||| |||    
T  52946 gggctcgatcgataatttttgcacattagatttaacccaaaagccaattaacacatttacaaaaagaaaaatttggacaatctgaaaattctcacatgca 53045  T
Q  585 aataggtctcggaattttatatagcacactattgacggg 623  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  53046 aataggtctcggaattttatttagcacactattgacggg 53084  T

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Target: scaffold0154 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 485 - 620
Target Start/End: Original strand, 31501 - 31636
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||||||||||  ||||||||| |||||||| ||||    
T  31501 gggctcgatcgataatttttgcacactagacccaacccaaaagcccattaacacacttacaaaaagaaaaatttggacaatctgaaaattctcactcgca 31600  T
Q  585 aataggtctcggaattttatatagcacactattgac 620  Q
    ||||||||| | |||||||| | |||||||||||||    
T  31601 aataggtctagtaattttattttgcacactattgac 31636  T

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Target: scaffold0069 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 485 - 620
Target Start/End: Original strand, 17863 - 17998
Alignment:
Q  485 gggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagcaatctgaagattctcacacgca 584  Q
    ||||||||||||||||||||||||||||||| |||| |||||| | ||||||||| ||||||||||||||||||| |||||||||| ||| ||||| | |    
T  17863 gggctcgatcgataatttttgcacattagactcaacccaaaagcccattaacacatttacaaaaagaaaaatttgggcaatctgaaaattgtcacatgta 17962  T
Q  585 aataggtctcggaattttatatagcacactattgac 620  Q
    ||||||||| | |||||||| |||||||||||||||    
T  17963 aataggtcttgaaattttatttagcacactattgac 17998  T

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Target: scaffold0002 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 464 - 620
Target Start/End: Complemental strand, 480623 - 480468
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||||||||||| ||||| |||| |||||||||||||||||||||||||||| ||||  |||||   ||||||||| ||| ||||||||||||||| |||    
T  480623 gcgaccccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggca 480525  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    || |||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  480524 atttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 480468  T

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Target: scaffold2142 (Bit Score: 73; Significance: 5e-33; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 464 - 620
Target Start/End: Original strand, 523 - 678
Alignment:
Q  464 gcgaccccgggcagtcgctcggggctcgatcgataatttttgcacattagacccaactcaaaagtcaattaacacacttacaaaaagaaaaatttgagca 563  Q
    |||| ||||||| ||||| |||| |||||||||||||||||||||||||||| ||||  |||||   ||||||||| ||| ||||||||||||||| |||    
T  523 gcgatcccgggcggtcgcccggg-ctcgatcgataatttttgcacattagactcaaccaaaaagctcattaacacatttataaaaagaaaaatttgggca 621  T
Q  564 atctgaagattctcacacgcaaataggtctcggaattttatatagcacactattgac 620  Q
    || |||| ||| ||||||| |||||||||| |||||||||| | |||||||||||||    
T  622 atttgaaaattgtcacacgtaaataggtcttggaattttatttggcacactattgac 678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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