View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442R-Insertion-11 (Length: 662)

Name: NF1442R-Insertion-11
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442R-Insertion-11
NF1442R-Insertion-11
[»] chr1 (2 HSPs)
chr1 (9-660)||(5131045-5131691)
chr1 (156-212)||(26324131-26324187)
[»] chr7 (4 HSPs)
chr7 (85-298)||(48361390-48361603)
chr7 (101-298)||(35780184-35780381)
chr7 (566-626)||(35780937-35780996)
chr7 (562-626)||(48360804-48360867)
[»] chr5 (20 HSPs)
chr5 (101-298)||(8535872-8536069)
chr5 (85-298)||(8529292-8529505)
chr5 (102-213)||(8641752-8641863)
chr5 (132-297)||(8637275-8637440)
chr5 (76-294)||(1599842-1600060)
chr5 (9-298)||(2856425-2856718)
chr5 (9-298)||(2874035-2874328)
chr5 (83-213)||(9003816-9003944)
chr5 (80-298)||(2844598-2844816)
chr5 (76-206)||(9074356-9074486)
chr5 (570-626)||(8547088-8547143)
chr5 (563-625)||(8678831-8678892)
chr5 (254-298)||(2904541-2904585)
chr5 (229-297)||(9074277-9074345)
chr5 (132-199)||(8644620-8644687)
chr5 (132-214)||(8678222-8678305)
chr5 (135-197)||(2904642-2904704)
chr5 (563-625)||(8645323-8645384)
chr5 (9-46)||(8644487-8644524)
chr5 (441-493)||(8637669-8637721)
[»] chr4 (1 HSPs)
chr4 (85-298)||(9443453-9443666)
[»] chr6 (1 HSPs)
chr6 (566-622)||(16717424-16717479)


Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 9 - 660
Target Start/End: Original strand, 5131045 - 5131691
Alignment:
Q  9 gaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgacctttttccaagatcatatatgatccaatgaagtgtgtcattcac 107  Q
    |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5131045 gaggagaagggaatgattgcaatctctcactttcaaaactgaaacacaacaatgacctttttctaagatcatatatgatccaatgaagtgtgtcattcac 5131144  T
Q  108 acaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131145 acaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgc 5131244  T
Q  208 tcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattggaaaccaaaaccagaaagtccta 307  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||| ||||| |||||    
T  5131245 tcaaactcccaacgaacggcacgtttaacatgccttacccatatttttatcaccttatattcattagtttta-attggaaaccaaaactagaaaatccta 5131343  T
Q  308 ccatagttacacgacctgttttcaacctgagaggagttgtagtagcttgcacgaattcacaacttgaaaactatcatgatctggattgcaagcaatataa 407  Q
    ||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5131344 ccataattacacgacctgtgttcaacctgagaggagttgtagtaacttgcacgaattcacaacttgaaaactatcatgatctggattgcaagcaatataa 5131443  T
Q  408 accctttctttacccaccattactttctgattctttttctccaaagctaatctcacagcccgatgagggcgtttggatttattctcaatctcgtctcttt 507  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  5131444 accctttctttacccaccattactttcttattctttttctccaaagctaatctcacagcccgaagagggtgtttggatttattctcaatctcgtctcttt 5131543  T
Q  508 tctcccctgatcgatttagcatcatgaagaggaagcttaaaatataggctccagcttaatgggaagtttaagcaaaatgtgggcagtgagggtgtgatgg 607  Q
    ||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  5131544 tct-ccctgatcgatttagcatcacgaagaggaagctt-aaatataggctccagcttaatgggaagtttaagcaaaatgtgggcagtga-ggtgtgatgg 5131640  T
Q  608 aagattatcaaaataaggggcaacatgcattacttttttgccccttcatcttt 660  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||    
T  5131641 aagattatcaaaataa-gggcaacatgcattac-tttttgccccttcatcttt 5131691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 212
Target Start/End: Complemental strand, 26324187 - 26324131
Alignment:
Q  156 aacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaa 212  Q
    |||||||||||| |||  ||||||||| ||||  ||| |||||||||||||||||||    
T  26324187 aacatttctccaggacggtgttccaagtgtgttcatcccaaggatcacacgctcaaa 26324131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 2e-45; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 85 - 298
Target Start/End: Complemental strand, 48361603 - 48361390
Alignment:
Q  85 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 184  Q
    |||||||||||||   ||||||||||||| ||| |||| || ||||||| |||||| ||| |||||||||||||||| ||||| ||   ||||||||| |    
T  48361603 atccaatgaagtgcaccattcacacaagtgggatactcgagactcgaaaaagaaatgtgaggatccacttcaacattcctccaggatggtgttccaagtg 48361504  T
Q  185 tgtgtatctcaaggatcacacgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattg 284  Q
    ||| ||||||||||||||||||||||||||||||   |  ||| ||||||||||| || |||||  | ||||||||||||||||||||||| |||| |||    
T  48361503 tgtttatctcaaggatcacacgctcaaactcccacgcattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttg 48361404  T
Q  285 gaaaccaaaaccag 298  Q
    ||||||||||||||    
T  48361403 gaaaccaaaaccag 48361390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 101 - 298
Target Start/End: Original strand, 35780184 - 35780381
Alignment:
Q  101 cattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggat 200  Q
    ||||||||||||| ||| ||| ||| || |||||||||||  || |||||||||||||| ||||||||||   || |||||| |||| ||| || |||||    
T  35780184 cattcacacaagtgggatacttaaggcttgaaatagaaatacgaggatccacttcaacagttctccatgatggtgctccaagtgtgtttatttcgaggat 35780283  T
Q  201 cacacgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattggaaaccaaaaccag 298  Q
     ||||| |||||| |||||  |  ||| |||| |||||| |||| |||| ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  35780284 aacacgatcaaacacccaatcattggcacgttgaacatgtcttatccatatttttatcaccttatattcattagttttaggttggaaaccaaaaccag 35780381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 566 - 626
Target Start/End: Original strand, 35780937 - 35780996
Alignment:
Q  566 atgggaagtttaagcaaaatgtgggcagtgagggtgtgatggaagattatcaaaataaggg 626  Q
    |||||||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  35780937 atgggaagttgaagcaaaatgtgggcggtga-ggtgggatggaagattatcaaaataaggg 35780996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 562 - 626
Target Start/End: Complemental strand, 48360867 - 48360804
Alignment:
Q  562 cttaatgggaagtttaagcaaaatgtgggcagtgagggtgtgatggaagattatcaaaataaggg 626  Q
    |||||||||||||| ||| | |||||||||||||| ||||  |||||||||||||||||||||||    
T  48360867 cttaatgggaagttgaaggagaatgtgggcagtga-ggtgatatggaagattatcaaaataaggg 48360804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 101 - 298
Target Start/End: Original strand, 8535872 - 8536069
Alignment:
Q  101 cattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggat 200  Q
    ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||    |||||||| |||| |||||||||| |    
T  8535872 cattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatggggttccaagtgtgtttatctcaagggt 8535971  T
Q  201 cacacgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattggaaaccaaaaccag 298  Q
    || |||||||||||||||   |  ||| ||||||||||| || |||||  | ||||||||||||||||||||||| |||| |||||||||||||||||    
T  8535972 caaacgctcaaactcccacacattggcacgtttaacatgtctcacccacatgtttatcaccttatattcattagttttaggttggaaaccaaaaccag 8536069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 85 - 298
Target Start/End: Original strand, 8529292 - 8529505
Alignment:
Q  85 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 184  Q
    |||||||||||||   ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||   ||||||||| |    
T  8529292 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 8529391  T
Q  185 tgtgtatctcaaggatcacacgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattg 284  Q
    ||| ||||||||||||||||||||||||| ||||  ||  |||  |||||||||| |||| |||     |||| ||||||||||||||||| |||| |||    
T  8529392 tgtttatctcaaggatcacacgctcaaacacccactgattggcatgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg 8529491  T
Q  285 gaaaccaaaaccag 298  Q
    ||| ||||||||||    
T  8529492 gaatccaaaaccag 8529505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 102 - 213
Target Start/End: Original strand, 8641752 - 8641863
Alignment:
Q  102 attcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatc 201  Q
    |||||||||||| ||| ||| ||| |||||||||||||||||| |||||||||||||||||||||||||   || |||||| |||| |||||||||||||    
T  8641752 attcacacaagtgggatacttaagactcgaaatagaaatctgaggatccacttcaacatttctccatgatggtgctccaagtgtgtttatctcaaggatc 8641851  T
Q  202 acacgctcaaac 213  Q
    ||||||||||||    
T  8641852 acacgctcaaac 8641863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 132 - 297
Target Start/End: Original strand, 8637275 - 8637440
Alignment:
Q  132 aatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggctcgt 231  Q
    ||||||||| ||  ||||||||||| |||||||||||||   ||||||||| || | ||||||||||| || ||| |||||| ||||||||  | |||||    
T  8637275 aatagaaatttggggatccacttcagcatttctccatgatggtgttccaagtgtatatatctcaaggaccatacgatcaaacacccaacgattgcctcgt 8637374  T
Q  232 ttaacatgccttacccatgtttttatcaccttatattcattagtattagattggaaaccaaaacca 297  Q
    |||||||  ||  ||||| || |||||||||||||||||||||| |||| ||||||||||||||||    
T  8637375 ttaacatcactgccccatattcttatcaccttatattcattagttttaggttggaaaccaaaacca 8637440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 76 - 294
Target Start/End: Complemental strand, 1600060 - 1599842
Alignment:
Q  76 tcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatg 175  Q
    |||||| | |||||||||||||   ||||||||||||| |||  || |||| || ||| |||||| ||| |||||||||||||||||||||| ||   ||    
T  1600060 tcatatcttatccaatgaagtgcaccattcacacaagtgggattcttaagcatccaaaaagaaatttgaggatccacttcaacatttctccaggatggtg 1599961  T
Q  176 ttccaagagtgtgtatctcaaggatcacacgctcaaactcccaacg-aacggctcgtttaacatgccttacccatgtttttatcaccttatattcattag 274  Q
    ||||||| |||| ||||||||||||||||  || ||||| |||||| |  ||| ||||||||||  || ||||   | ||||||||||||||||||||||    
T  1599960 ttccaagtgtgtttatctcaaggatcacaatcttaaact-ccaacgcattggcacgtttaacatatctcaccctcatgtttatcaccttatattcattag 1599862  T
Q  275 tattagattggaaaccaaaa 294  Q
    | |||| |||||||||||||    
T  1599861 ttttaggttggaaaccaaaa 1599842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 2856718 - 2856425
Alignment:
Q  9 gaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgaccttttt--ccaagat-catatatgatccaatgaagtgtgtcatt 104  Q
    |||||||||| || || ||||| ||||||||||||||| | |||||||| | |||| ||| |  ||||| | || |||| ||||||||||||| | ||||    
T  2856718 gaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtgcgccatt 2856619  T
Q  105 cacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcaca 204  Q
    |||||| || |||  |  |||| || ||| |||||| ||| |||||||||||||||||||||||||  ||||||| || ||||||||||| || |  |||    
T  2856618 cacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatgatgttccgagcgtgtgtatctcgagcactaca 2856519  T
Q  205 cgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattggaaaccaaaaccag 298  Q
    ||||||||| || |||||  | ||||| ||||||   |   |||  || | |||||||||||||||||||| || | |||||||||||||||||    
T  2856518 cgctcaaacaccaaacgattgtctcgtctaacatatttgttccacattatgatcaccttatattcattagttttgggttggaaaccaaaaccag 2856425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 9 - 298
Target Start/End: Complemental strand, 2874328 - 2874035
Alignment:
Q  9 gaggagaagggaatgattgcaatctctcactttcaaaagt-aaacacaacaatgaccttttt--ccaagat-catatatgatccaatgaagtgtgtcatt 104  Q
    |||||||||| || || ||||| ||||||||||||||| | |||||||| | |||| ||| |  ||||| | || |||| ||||||||||||| | ||||    
T  2874328 gaggagaaggaaacgactgcaacctctcactttcaaaattgaaacacaatattgacttttgttgccaagcttcaaatataatccaatgaagtgcgccatt 2874229  T
Q  105 cacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaaggatcaca 204  Q
    |||||| || |||  |  |||| || ||| |||||| ||| |||||||||||||||||||||||||   |||||| || ||||||||||| || |  |||    
T  2874228 cacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacatttctccatgatggtgttccgagcgtgtgtatctcgagcactaca 2874129  T
Q  205 cgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattggaaaccaaaaccag 298  Q
    ||||||||| || |||||  | ||||| ||||||   |   |||| || | |||||||||||||||||||| || | |||||||| ||||||||    
T  2874128 cgctcaaacaccaaacgattgtctcgtctaacatatttgttccatattatgatcaccttatattcattagttttgggttggaaactaaaaccag 2874035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 83 - 213
Target Start/End: Original strand, 9003816 - 9003944
Alignment:
Q  83 tgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaag 182  Q
    ||||||||||||||| | ||||||||||||| ||| | | ||| ||| ||||||| |  ||| |||||||||||||||||||||||||   ||||||       
T  9003816 tgatccaatgaagtgcgccattcacacaagtcggataattaagactccaaatagacagttgaggatccacttcaacatttctccatgatggtgttcc--c 9003913  T
Q  183 agtgtgtatctcaaggatcacacgctcaaac 213  Q
    ||||||||||||||||||| |||||||||||    
T  9003914 agtgtgtatctcaaggatcgcacgctcaaac 9003944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 80 - 298
Target Start/End: Complemental strand, 2844816 - 2844598
Alignment:
Q  80 atatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttcc 179  Q
    |||| ||||||||||||| | |||||||||| || |||  |  |||| || ||| |||||| ||| ||||||||||||| |||||||||||   ||||||    
T  2844816 atataatccaatgaagtgcgccattcacacatgttggattcaaaagcttcaaaaaagaaatttgaggatccacttcaacctttctccatgatggtgttcc 2844717  T
Q  180 aagagtgtgtatctcaaggatcacacgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtatta 279  Q
    ||| ||||||||||| || |  |||||||||||| || |||||  |  |||| ||||||   |   |||  || | |||||||||||||||||||| ||     
T  2844716 aagcgtgtgtatctcgagcactacacgctcaaacaccaaacgattgtttcgtctaacatatttgttccacattatgatcaccttatattcattagttttg 2844617  T
Q  280 gattggaaaccaaaaccag 298  Q
    | |||||||||||||||||    
T  2844616 ggttggaaaccaaaaccag 2844598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 76 - 206
Target Start/End: Complemental strand, 9074486 - 9074356
Alignment:
Q  76 tcatatatgatccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatg 175  Q
    |||||| | |||||||||||||   ||||||||||||| ||| |||| || ||| ||| |||||| ||| |||||||||||||||||||| ||     ||    
T  9074486 tcatatcttatccaatgaagtgcaccattcacacaagtgggatactcgagactcaaaaaagaaatttgaggatccacttcaacatttctcaatattgttg 9074387  T
Q  176 ttccaagagtgtgtatctcaaggatcacacg 206  Q
    ||||||| |||| ||||| ||||||||||||    
T  9074386 ttccaagtgtgtttatctgaaggatcacacg 9074356  T

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Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 570 - 626
Target Start/End: Complemental strand, 8547143 - 8547088
Alignment:
Q  570 gaagtttaagcaaaatgtgggcagtgagggtgtgatggaagattatcaaaataaggg 626  Q
    |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||    
T  8547143 gaagtttaagcagaatgtgggcagtgagg-tgagatggaagattatcaaaataaggg 8547088  T

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Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 563 - 625
Target Start/End: Original strand, 8678831 - 8678892
Alignment:
Q  563 ttaatgggaagtttaagcaaaatgtgggcagtgagggtgtgatggaagattatcaaaataagg 625  Q
    ||||||||||| | |||||||||||||||| ||| | |||||||||||||||||||| |||||    
T  8678831 ttaatgggaagatgaagcaaaatgtgggcaatgatg-tgtgatggaagattatcaaagtaagg 8678892  T

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Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 254 - 298
Target Start/End: Complemental strand, 2904585 - 2904541
Alignment:
Q  254 ttatcaccttatattcattagtattagattggaaaccaaaaccag 298  Q
    |||||||||||||||||||||| || | |||||||||||||||||    
T  2904585 ttatcaccttatattcattagttttgggttggaaaccaaaaccag 2904541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 229 - 297
Target Start/End: Complemental strand, 9074345 - 9074277
Alignment:
Q  229 cgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattggaaaccaaaacca 297  Q
    |||||| |||| |||| |||  || |||| |||||||||||||||||||||| |||||| |||||||||    
T  9074345 cgtttaccatgtcttatccacattcttattaccttatattcattagtattaggttggaatccaaaacca 9074277  T

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Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 8644620 - 8644687
Alignment:
Q  132 aatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaagga 199  Q
    ||||||||| ||| |||| |||||| |||||||||||||   ||||||||| |||| |||||||||||    
T  8644620 aatagaaatttgaggatctacttcagcatttctccatgatggtgttccaagtgtgtttatctcaagga 8644687  T

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Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 214
Target Start/End: Original strand, 8678222 - 8678305
Alignment:
Q  132 aatagaaatctgaagatccacttcaacatttctccatgacaatg-ttccaagagtgtgtatctcaaggatcacacgctcaaact 214  Q
    ||||||||| ||| ||||||||||| |||||||||||||   || ||||||  |||| |||||||||||||| ||| |||||||    
T  8678222 aatagaaatttgaggatccacttcagcatttctccatgatggtgtttccaattgtgtttatctcaaggatcatacgatcaaact 8678305  T

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Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 2904704 - 2904642
Alignment:
Q  135 agaaatctgaagatccacttcaacatttctccatgacaatgttccaagagtgtgtatctcaag 197  Q
    |||||| ||| |||||||||||| ||||||||||||   |||||| || ||||||||||||||    
T  2904704 agaaatttgaggatccacttcaagatttctccatgatgttgttccgagcgtgtgtatctcaag 2904642  T

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Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 563 - 625
Target Start/End: Original strand, 8645323 - 8645384
Alignment:
Q  563 ttaatgggaagtttaagcaaaatgtgggcagtgagggtgtgatggaagattatcaaaataagg 625  Q
    ||||||||||| | |||||| ||||||||| ||| | |||||||||||||||||||| |||||    
T  8645323 ttaatgggaagatgaagcaacatgtgggcaatgatg-tgtgatggaagattatcaaagtaagg 8645384  T

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Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 46
Target Start/End: Original strand, 8644487 - 8644524
Alignment:
Q  9 gaggagaagggaatgattgcaatctctcactttcaaaa 46  Q
    |||||||||| ||||||||||| |||||||||||||||    
T  8644487 gaggagaaggaaatgattgcaacctctcactttcaaaa 8644524  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 441 - 493
Target Start/End: Original strand, 8637669 - 8637721
Alignment:
Q  441 tttttctccaaagctaatctcacagcccgatgagggcgtttggatttattctc 493  Q
    ||||||||||||||||||||| |||| |||  |||||| |||| |||||||||    
T  8637669 tttttctccaaagctaatctcgcagcacgaatagggcgcttgggtttattctc 8637721  T

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Target: chr4 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 85 - 298
Target Start/End: Original strand, 9443453 - 9443666
Alignment:
Q  85 atccaatgaagtgtgtcattcacacaagtaggacactcaagcctcgaaatagaaatctgaagatccacttcaacatttctccatgacaatgttccaagag 184  Q
    |||||||||||||   ||||||||||||| ||| |||  || ||||||| |||||| ||| |||||||||||||||||||||| ||   ||||||||| |    
T  9443453 atccaatgaagtgcaccattcacacaagtgggatactttagactcgaaaaagaaatttgaggatccacttcaacatttctccaggatgttgttccaagtg 9443552  T
Q  185 tgtgtatctcaaggatcacacgctcaaactcccaacgaacggctcgtttaacatgccttacccatgtttttatcaccttatattcattagtattagattg 284  Q
    ||| ||||||||||||||||||||||||| ||||  ||  |||| |||||||||| |||| |||     |||| ||||||||||||||||| |||| |||    
T  9443553 tgtttatctcaaggatcacacgctcaaacacccactgattggcttgtttaacatgtcttatccacacgcttattaccttatattcattagttttaggttg 9443652  T
Q  285 gaaaccaaaaccag 298  Q
    ||| ||||||||||    
T  9443653 gaatccaaaaccag 9443666  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 566 - 622
Target Start/End: Original strand, 16717424 - 16717479
Alignment:
Q  566 atgggaagtttaagcaaaatgtgggcagtgagggtgtgatggaagattatcaaaata 622  Q
    |||||||||| ||||||||||||||| |||| |||| ||||||||| ||||||||||    
T  16717424 atgggaagttgaagcaaaatgtgggcggtga-ggtgggatggaagaatatcaaaata 16717479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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