View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1442R-Insertion-14 (Length: 860)
Name: NF1442R-Insertion-14
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442R-Insertion-14 |
 | |
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| [»] scaffold0153 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 665; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 8 - 840
Target Start/End: Original strand, 11238142 - 11238961
Alignment:
| Q |
8 |
aatatgttgcctgaggaattgtggtgttagatttattttattcgatgattagannnnnnnnnnatcgattctttaattgtgcacttcattatgtggttag |
107 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
11238142 |
aatatgttgcctgaggaattgtggtgttagatttattttattcgatgattagagtttttttg-atcgattctttaattgtgcacttcattatgtggttag |
11238240 |
T |
|
| Q |
108 |
tgatttggttttctaagattggaaataggttctatgtcctttggctgtcacttgtcgtgtgttaaaatgtttgatgactgttacacaaattttatgatgt |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11238241 |
tgatttggttttctaagattggaattaggttccatgtcctttggctgtcacttgtcgtgtgttaaaatgtttgatgactgttacacaaattttatgatgt |
11238340 |
T |
|
| Q |
208 |
atgctgcaaaactgcttgttgctgggattgcttgaagcaatgtgaagtttctttatctacagttggcatgacatatttctgccaaaaacaatgaactgtg |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11238341 |
atgctgcaaaaccgcttgttgctgggattgcttgaagcaatgtgaagtttctttatctacagttggcatgacatatttctgccaaaaacaatgaactgtg |
11238440 |
T |
|
| Q |
308 |
atccaaaaacaatgaattgtgattctagattattcattattcctccaccattgcaatgataatatgtttcctgtctttctctctcactgaatttctttta |
407 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
11238441 |
atccaaaagcaatgaattgtgattctagattattcattattcctccaccattgcaatgataatatgtttcctgtctttctccctcactgaatttctttta |
11238540 |
T |
|
| Q |
408 |
tttgtgattattttataatgattttcaatgcttatgttggatttcattgtctaatggagctttggtaccaaatatgaaccatatcctaggaagtgcttgg |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
11238541 |
tttgtgattattttataatgattttcaatgcttatgttggatttcattgtctaatggagctttggtaccaaatatgaaccatatccta-gaagtgcttgg |
11238639 |
T |
|
| Q |
508 |
ttcaatagccaacactgtaattttatttaattgaatatttatcacatttatcttcttaaatcagagaaaataggaattaggtgtatggcttctgaaaatt |
607 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||||| ||||| |
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|
| T |
11238640 |
ttcaatagccaacactgtaattttattcaattgaatatttatcacatttatcttctgaaatcagagaaaatagggattaggtgtatgacttctgcaaatt |
11238739 |
T |
|
| Q |
608 |
gtgtcgactgcttgaattagtagcagttgatttgcttgagaagattattctcttttcagttctgttagctcaattccttgaatctctgtgcaacttgagt |
707 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11238740 |
gtgtcgactgcttgaattagtggcagttgatttgcttgagaa-attattctcttttcagttctgttagctcaattccttgaatctctgtgcaacttgagt |
11238838 |
T |
|
| Q |
708 |
ttgttggaagttattagacacaaagagtttgttttaggctggttgcaccttggttataagttttgtctcaacactcaacatggaaagtcacttatgtgca |
807 |
Q |
| |
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||||| ||||||||||||||| |||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
11238839 |
ttgtt-gaagttattagacac--agagtttg-tttaggctggttgcac--ttgttataagttttgtctcaacactcaacatgg-aagtcacttatatgca |
11238931 |
T |
|
| Q |
808 |
gtcttccttgattggaaaagtgctcatgtgccc |
840 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||| |
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|
| T |
11238932 |
gtct--cttgattgg-aaagtgctcatgtgccc |
11238961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 367 - 713
Target Start/End: Complemental strand, 7168102 - 7167754
Alignment:
| Q |
367 |
taatatgtttcctgtctttctctctcactgaattt-cttttatttgt-gattattttataatgattttcaatgcttatgttggatttcattgtctaatgg |
464 |
Q |
| |
|
||||||||||||| |||| |||| ||||||||||| || || ||| | ||||||||||| | ||||| || |||| ||||||||||||| | |||||| |
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| T |
7168102 |
taatatgtttcctctcttcctctttcactgaattttctgttgtttttcgattattttatcactgttttctatacttaagttggatttcattatttaatgg |
7168003 |
T |
|
| Q |
465 |
agctttggtaccaaatatgaaccatatcctaggaagtgcttggttcaatagccaacactgtaattttatttaattgaatatttat-cacatttatcttct |
563 |
Q |
| |
|
||||| || | | | |||| | | | | ||||||||| |||||||||||||||| |||||||||||| || ||||||||||| || | | || || | |
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|
| T |
7168002 |
cgctttcgttctgactttgaatcctttacgaggaagtgccaggttcaatagccaacaatgtaattttattcaaatgaatatttattcaaaatcattttat |
7167903 |
T |
|
| Q |
564 |
taaatcagagaaaataggaattaggtgtatggcttctgaaaattgtgtcgactgcttgaattagtagcagttgatttgcttgagaagattattctctttt |
663 |
Q |
| |
|
| || | |||||||||||||||||| |||| |||||| |||| |||| |||||||||||| ||| |||||||||| |||||| ||||||||||| |||| |
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| T |
7167902 |
gatattatagaaaataggaattaggtttatgacttctgcaaatagtgttgactgcttgaatgagtggcagttgattcgcttgaaaagattattct-tttt |
7167804 |
T |
|
| Q |
664 |
cagttctgttagctcaattccttgaatctctgtgcaacttgagtttgttg |
713 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| ||| ||||||| |
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|
| T |
7167803 |
cagttctgttggctcaattccttaaatctctgtgcaatctgaatttgttg |
7167754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 76 - 220
Target Start/End: Complemental strand, 7167171 - 7167029
Alignment:
| Q |
76 |
ttctttaattgtgcacttcattatgtggttagtgatttggttttctaagattggaaataggttctatgtcctttggctgtcacttgt-cgtgtgttaaaa |
174 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||||||||||||| |||| || |||| ||||||||||||||||||||||| || |||||||| |
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| T |
7167171 |
ttctttaattgtgcacttcattatatggttagtggtttggttttctaaaattgaaattagg---tatgtcctttggctgtcacttgtgtgtatgttaaaa |
7167075 |
T |
|
| Q |
175 |
tgtttgatgactgttacacaaattttatgatgtatgctgcaaaact |
220 |
Q |
| |
|
||||||||||||| |||| | |||||||||||||||||||||||| |
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| T |
7167074 |
tgtttgatgactgctacaaattttttatgatgtatgctgcaaaact |
7167029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 76 - 219
Target Start/End: Complemental strand, 7173879 - 7173735
Alignment:
| Q |
76 |
ttctttaattgtgcacttcattatgtggttagtgatttggttttctaagattggaaataggttctatgtcctttggctgtcacttgt-cgtgtgttaaaa |
174 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| |||||||||| | |||||||| ||| | |||| |||||||||||||||||| || | |||||| |
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|
| T |
7173879 |
ttcttcaattgtgcacttcattatatggttagttgtttggttttccatgattggaattagttaatatggcctttggctgtcacttgtatgtatcttaaaa |
7173780 |
T |
|
| Q |
175 |
tgtttgatgactgttacacaaattttatgatgtatgctgcaaaac |
219 |
Q |
| |
|
||||||||| ||| ||||||||||| ||||||||||||||||||| |
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|
| T |
7173779 |
tgtttgatggctgctacacaaatttgatgatgtatgctgcaaaac |
7173735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 167 - 235
Target Start/End: Complemental strand, 7168212 - 7168145
Alignment:
| Q |
167 |
tgttaaaatgtttgatgactgttacacaaattttatgatgtatgctgcaaaactgcttgttgctgggat |
235 |
Q |
| |
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|
| T |
7168212 |
tgttaaaatgtttgacgactgctacacaa-ttttatgatgtatgctgcaaaaccgcgtgttgttgggat |
7168145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 7160190 - 7160110
Alignment:
| Q |
342 |
cattattcctccaccattgcaatgataatatgtttcctgtctttctctctcactgaatttcttttatttgtgattatttta |
422 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |||||||| |||||| ||||| | | ||||| ||||||||| |
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|
| T |
7160190 |
cattattcctccaccatcccaatggtaatatgtttcctctctttctcgctcactaaatttttatgctttgttattatttta |
7160110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 626 - 708
Target Start/End: Complemental strand, 7173404 - 7173323
Alignment:
| Q |
626 |
agtagcagttgatttgcttgagaagatta-ttctcttttcagttctgttagctcaattccttgaatctctgtgcaacttgagtt |
708 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||| |||||| ||||||||||||| |||| | |||| |||| ||||||||||| |
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|
| T |
7173404 |
agtagcagttgatttgcttgaaaagattaattct-ttttcatttctgttagctcatttcc-taaatcgctgttcaacttgagtt |
7173323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 566 - 694
Target Start/End: Original strand, 24724283 - 24724410
Alignment:
| Q |
566 |
aatcagagaaaataggaattaggtgtatggcttctgaaaattgtgtcgactgcttgaattagtagcagttgatttgcttgagaagattattctcttttca |
665 |
Q |
| |
|
||||| |||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| | ||| ||| ||||||| ||||||||||| |||| | |
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| T |
24724283 |
aatcatagaaaataggaattaggtctacagcttctgtaaattgtgtcgactacttgaattagtggtagtagatatgcttgaaaagattattct-ttttta |
24724381 |
T |
|
| Q |
666 |
gttctgttagctcaattccttgaatctct |
694 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |
|
|
| T |
24724382 |
gttctgttagcttaattcctataatctct |
24724410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0153 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0153
Description:
Target: scaffold0153; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 29454 - 29544
Alignment:
| Q |
172 |
aaatgtttgatgactgttacacaaattttatgatgtatgctgcaaaactgcttgttgctgggattgcttgaagcaatgtgaagtttctttat |
263 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||| || || || |||||||| || | ||||||||||| |
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|
| T |
29454 |
aaatgtttgacgactgctacacaaattttatgatgtatgctgcaaaaccgcctgttgttgaga-tgtttgaagcactgcggagtttctttat |
29544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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