View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1442R-Insertion-15 (Length: 893)
Name: NF1442R-Insertion-15
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442R-Insertion-15 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 800; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 800; E-Value: 0
Query Start/End: Original strand, 9 - 893
Target Start/End: Complemental strand, 53096694 - 53095815
Alignment:
| Q |
9 |
ttctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaac |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096694 |
ttctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaac |
53096595 |
T |
|
| Q |
109 |
taaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgcactccactcaaatgcctattagttgtttccaataata |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096594 |
taaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgctctccactcaaatgcctattagttgtttccaataata |
53096495 |
T |
|
| Q |
209 |
aatgtttaatgacaatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagttt |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096494 |
aatgtttaatgacgatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagttt |
53096395 |
T |
|
| Q |
309 |
agaagttccnnnnnnncatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagca |
408 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096394 |
agaagttccaaaaaaacatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagca |
53096295 |
T |
|
| Q |
409 |
caaaactcaaatgggactagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttc |
508 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096294 |
caaaactcaaatgggacgagaaatggaaatagttttgatgttggaacagttcattctgctagtttggacatttttcctgaaactaaaaatggtattcttc |
53096195 |
T |
|
| Q |
509 |
agcagcagtgccattatcttgacatatctctctctaaggatcctccgatgccctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttgg |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096194 |
agcagcagtgccattatcttgacatatctctctctaaggatcctccgatg-cctgcaaaatgtgatcctctaaagcaagtaagcttatgaatgcttttgg |
53096096 |
T |
|
| Q |
609 |
taatgatgtccccccttgttccctcttcctcatgatctgatgattatatttcatattctgtagaatttcaacttcttgtccttgtccttgtcggctggag |
708 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53096095 |
taatgatgtccccccttgttccctcttcctcatgatctgatgattatatttcatattctgtagaatttcaacttcttgtccttgtccttgtcggctggag |
53095996 |
T |
|
| Q |
709 |
gtaacgggttaaaggttgaagactgttttaccaaaggtggaagtaggaggttagaacagttctcaaaatgtcaagtgccttattttcggtctatacagca |
808 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
53095995 |
gtaacgggttaaaggttgaagactgttttaccaaaggtggaattaggaggttagaacagttctcaaaatctcaagtgccttattttcggtctatacaaca |
53095896 |
T |
|
| Q |
809 |
gcagcatgggctcatgccaataccaaacaacttccaccaaatcagtataccttcaactttcttacattgatcagcttcctgctgc |
893 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
53095895 |
gcagcatgggctcatgccaatacc-aacaac-tccaccaaatcagtatacc-tcaac-ttcttacattgatcagcttcctgctgc |
53095815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 3e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 330 - 479
Target Start/End: Original strand, 1369335 - 1369483
Alignment:
| Q |
330 |
tgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactaga |
429 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||| | | |||||||||||||||||||| ||||||| ||| |
|
|
| T |
1369335 |
tgccaaagaatctgagcgttatgaatgtcaccaaaccagagttcaccaaagatcaaaatgtata-tcctaatcaaagcacaaaactctaatgggatgaga |
1369433 |
T |
|
| Q |
430 |
aatggaaatagttttgatgttggaacagttcattctgctagtttggacat |
479 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| || ||||||||||||| |
|
|
| T |
1369434 |
aatggaaatagttttgatgctggaacagttcatactactagtttggacat |
1369483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 623 - 685
Target Start/End: Complemental strand, 26143364 - 26143302
Alignment:
| Q |
623 |
cttgttccctcttcctcatgatctgatgattatatttcatattctgtagaatttcaacttctt |
685 |
Q |
| |
|
|||||| ||||||||||||| ||||||||||||||||||||||||| | | ||||||||||| |
|
|
| T |
26143364 |
cttgttacctcttcctcatgctctgatgattatatttcatattctgcaaagcttcaacttctt |
26143302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University