View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442R-Insertion-16 (Length: 895)

Name: NF1442R-Insertion-16
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442R-Insertion-16
NF1442R-Insertion-16
[»] chr1 (6 HSPs)
chr1 (248-831)||(5884173-5884745)
chr1 (9-234)||(5883235-5883458)
chr1 (199-242)||(45752074-45752117)
chr1 (199-237)||(10484134-10484172)
chr1 (199-236)||(43036142-43036179)
chr1 (199-236)||(49102794-49102831)
[»] chr7 (3 HSPs)
chr7 (199-230)||(48775927-48775958)
chr7 (199-229)||(36747169-36747199)
chr7 (199-236)||(42112777-42112814)
[»] chr5 (1 HSPs)
chr5 (199-234)||(4841527-4841562)
[»] chr3 (4 HSPs)
chr3 (199-230)||(32720909-32720940)
chr3 (199-229)||(38526031-38526061)
chr3 (199-236)||(40118720-40118757)
chr3 (201-230)||(47434490-47434519)
[»] chr2 (1 HSPs)
chr2 (199-230)||(39913504-39913535)
[»] scaffold1562 (1 HSPs)
scaffold1562 (199-229)||(1-31)
[»] scaffold1158 (1 HSPs)
scaffold1158 (199-229)||(2562-2592)
[»] chr8 (2 HSPs)
chr8 (196-230)||(79436-79470)
chr8 (199-229)||(4074862-4074892)
[»] chr4 (3 HSPs)
chr4 (199-229)||(36151543-36151573)
chr4 (200-229)||(43031553-43031582)
chr4 (196-229)||(49936729-49936762)


Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 248 - 831
Target Start/End: Original strand, 5884173 - 5884745
Alignment:
Q  248 tgatcttatataaactaatcaaaccatgcacaaaatattaatacaataactacatcccgtagactacaagatcttggattcgagttttggagatgaaaat 347  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||||||||||||||||||    
T  5884173 tgatcttatataaactagtcaaaccatgcacaaaaaattaatacaataactacatcccaaagactacaagatcttgaattcgagttttggagatgaaaat 5884272  T
Q  348 tatagatgggtgtggagaggtctcttaagcaagtttccttcgacttcagattaatcatcaacaaaattgataatcgtttgcctaatgatatggttaaacc 447  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5884273 tatagttgggtgtggagaggtctcttaagcaagtttccttcgacttcagattaatcatcaacaaaattgataatcgtttgtctaatgatatggttaaacc 5884372  T
Q  448 catagttttcaacatgatgatcttatcctaccgcaattacctgcgaaacatgcatcttacaaatacaactattttccactattcagataaatcactagcc 547  Q
    |||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5884373 catagttttcaacatga---tcttatcctaccgaaattacctgcgaaacatgcatcttacaaatgcaactattttccactattcagataaatcactagcc 5884469  T
Q  548 tgtaatcaaacattctttgaacctaagtagaatggataattctagttccatctatttgtttactagtcaaactttctgtccaaacttagataaagacttt 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5884470 tgtaatcaaacattctttgaacctaagtagaatggataattctagttccatctatttgtttactagtcaaactttctgtccaaacttagataaagacttt 5884569  T
Q  648 agctaggttataaaattctgatgccattgcaagtcagaatttttgtattttttctaaagactatatatacttccattgggtctgaataagttgctcctta 747  Q
    |||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||||    |||||||||||| ||||||||||||||||||||||    
T  5884570 agctaggttataaaattctgatgccattgcaaatcagattttttgta-tttttctaaagac----tatacttccatt-ggtctgaataagttgctcctta 5884663  T
Q  748 aatatgtaggggtaaagtgtagtacacgactctttgaaaaatcaagcacacaagacccctaccctgcctataaaaggaaacata 831  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||    
T  5884664 aataagta-gggtaaagtgtagtacacgactctttgaaaaatcaagcacacaaagacccta-cctgcctataaaaggaaacata 5884745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 9 - 234
Target Start/End: Original strand, 5883235 - 5883458
Alignment:
Q  9 gtatcaacatggtcttcgacttttataaaatatcatgatcgatcatcacttggcagaaggcaagctaagttagatcatccatcttagaaagattgtcatg 108  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  5883235 gtatcaacctggtcttcgacttttataaaatatcatgatcgatcatcacttggcagaaggctagctaagttagaccatccatcttagaaagattgtcatg 5883334  T
Q  109 tcaaattggtccaccgtaattacatacatagtattaagttagatccttgaaataatacannnnnnnnaatgaaaataatacatttatttgggctttgttt 208  Q
    |||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||||        |||||||||||||||||||| |||| |||||||    
T  5883335 tcaaattggt-caccgtaattacatacatagtatcaagtt-gatccttgaaataatacattttttttaatgaaaataatacatttatctgggttttgttt 5883432  T
Q  209 gagagtttggaggggaggggaaagaa 234  Q
    |||||||||||||| |||| ||||||    
T  5883433 gagagtttggagggaagggaaaagaa 5883458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 45752074 - 45752117
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaaagaaggatttcg 242  Q
    |||||||||||||||||||||||||||| ||| ||||| |||||    
T  45752074 ggctttgtttgagagtttggaggggaggagaaggaagggtttcg 45752117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 10484134 - 10484172
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaaagaagga 237  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  10484134 ggctctgtttgagagtttggaggggaggggaaggaagga 10484172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 43036142 - 43036179
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaaagaagg 236  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  43036142 ggctttgtttgggagtttggaggggaggggaaggaagg 43036179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 49102794 - 49102831
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaaagaagg 236  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  49102794 ggctttgtttgggagtttggaggggaggggaaggaagg 49102831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 48775927 - 48775958
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaa 230  Q
    ||||||||||||||||||||||||||||||||    
T  48775927 ggctttgtttgagagtttggaggggaggggaa 48775958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 36747169 - 36747199
Alignment:
Q  199 ggctttgtttgagagtttggaggggagggga 229  Q
    |||||||||||||||||||||||||||||||    
T  36747169 ggctttgtttgagagtttggaggggagggga 36747199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 42112777 - 42112814
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaaagaagg 236  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  42112777 ggctttgtttgggagtttggaggggaggggaaggaagg 42112814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 234
Target Start/End: Original strand, 4841527 - 4841562
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaaagaa 234  Q
    ||||||||||| ||||||||||||||||||||||||    
T  4841527 ggctttgtttgggagtttggaggggaggggaaagaa 4841562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 230
Target Start/End: Original strand, 32720909 - 32720940
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaa 230  Q
    ||||||||||||||||||||||||||||||||    
T  32720909 ggctttgtttgagagtttggaggggaggggaa 32720940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 38526031 - 38526061
Alignment:
Q  199 ggctttgtttgagagtttggaggggagggga 229  Q
    |||||||||||||||||||||||||||||||    
T  38526031 ggctttgtttgagagtttggaggggagggga 38526061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 40118720 - 40118757
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaaagaagg 236  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  40118720 ggctttgtttgagagtttggagggtaggggaaggaagg 40118757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 230
Target Start/End: Complemental strand, 47434519 - 47434490
Alignment:
Q  201 ctttgtttgagagtttggaggggaggggaa 230  Q
    ||||||||||||||||||||||||||||||    
T  47434519 ctttgtttgagagtttggaggggaggggaa 47434490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 230
Target Start/End: Complemental strand, 39913535 - 39913504
Alignment:
Q  199 ggctttgtttgagagtttggaggggaggggaa 230  Q
    ||||||||||||||||||||||||||||||||    
T  39913535 ggctttgtttgagagtttggaggggaggggaa 39913504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 1 - 31
Alignment:
Q  199 ggctttgtttgagagtttggaggggagggga 229  Q
    |||||||||||||||||||||||||||||||    
T  1 ggctttgtttgagagtttggaggggagggga 31  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 2592 - 2562
Alignment:
Q  199 ggctttgtttgagagtttggaggggagggga 229  Q
    |||||||||||||||||||||||||||||||    
T  2592 ggctttgtttgagagtttggaggggagggga 2562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 230
Target Start/End: Original strand, 79436 - 79470
Alignment:
Q  196 ttgggctttgtttgagagtttggaggggaggggaa 230  Q
    |||||||||||||| ||||||||||||||||||||    
T  79436 ttgggctttgtttgcgagtttggaggggaggggaa 79470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 4074892 - 4074862
Alignment:
Q  199 ggctttgtttgagagtttggaggggagggga 229  Q
    |||||||||||||||||||||||||||||||    
T  4074892 ggctttgtttgagagtttggaggggagggga 4074862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 36151573 - 36151543
Alignment:
Q  199 ggctttgtttgagagtttggaggggagggga 229  Q
    |||||||||||||||||||||||||||||||    
T  36151573 ggctttgtttgagagtttggaggggagggga 36151543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 43031553 - 43031582
Alignment:
Q  200 gctttgtttgagagtttggaggggagggga 229  Q
    ||||||||||||||||||||||||||||||    
T  43031553 gctttgtttgagagtttggaggggagggga 43031582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 49936762 - 49936729
Alignment:
Q  196 ttgggctttgtttgagagtttggaggggagggga 229  Q
    |||||||||||||| |||||||||||||||||||    
T  49936762 ttgggctttgtttgggagtttggaggggagggga 49936729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University