View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442R-Insertion-17 (Length: 980)

Name: NF1442R-Insertion-17
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442R-Insertion-17
NF1442R-Insertion-17
[»] chr3 (16 HSPs)
chr3 (106-309)||(13229854-13230057)
chr3 (9-102)||(3225014-3225107)
chr3 (308-418)||(19932887-19932995)
chr3 (9-102)||(1311753-1311846)
chr3 (9-102)||(11034620-11034713)
chr3 (9-102)||(19933010-19933103)
chr3 (308-418)||(3224891-3224999)
chr3 (636-775)||(1311404-1311540)
chr3 (308-418)||(1311631-1311738)
chr3 (579-632)||(19932652-19932705)
chr3 (42-103)||(19933103-19933165)
chr3 (691-787)||(19932652-19932748)
chr3 (45-103)||(11034561-11034620)
chr3 (312-407)||(11034732-11034826)
chr3 (493-539)||(11034923-11034970)
chr3 (574-620)||(1311404-1311450)
[»] scaffold0002 (1 HSPs)
scaffold0002 (106-309)||(194151-194354)
[»] chr8 (15 HSPs)
chr8 (308-435)||(6818681-6818808)
chr8 (9-102)||(5536789-5536882)
chr8 (636-875)||(44668713-44668948)
chr8 (15-101)||(6818824-6818910)
chr8 (308-418)||(5536897-5537005)
chr8 (308-416)||(3897106-3897212)
chr8 (9-102)||(44669159-44669252)
chr8 (641-761)||(6818504-6818622)
chr8 (308-418)||(44669035-44669144)
chr8 (575-632)||(3897395-3897452)
chr8 (636-777)||(5537092-5537231)
chr8 (9-97)||(3896998-3897086)
chr8 (42-103)||(44669252-44669314)
chr8 (573-622)||(5537182-5537231)
chr8 (574-625)||(44668808-44668859)
[»] chr7 (43 HSPs)
chr7 (106-220)||(10411507-10411621)
chr7 (15-102)||(36018224-36018311)
chr7 (9-102)||(12502789-12502882)
chr7 (9-92)||(11283085-11283168)
chr7 (691-840)||(12528775-12528924)
chr7 (9-91)||(12528419-12528501)
chr7 (9-102)||(16421925-16422018)
chr7 (308-435)||(16484097-16484220)
chr7 (308-418)||(16421802-16421910)
chr7 (15-90)||(26262903-26262978)
chr7 (15-102)||(28393263-28393350)
chr7 (308-418)||(12528527-12528635)
chr7 (308-390)||(36018128-36018209)
chr7 (10-102)||(48186354-48186446)
chr7 (9-84)||(21267912-21267987)
chr7 (308-418)||(48186461-48186569)
chr7 (308-390)||(11283193-11283274)
chr7 (9-102)||(16484235-16484328)
chr7 (308-418)||(21268020-21268127)
chr7 (636-779)||(36017872-36018013)
chr7 (308-418)||(12502897-12503005)
chr7 (573-624)||(12528812-12528863)
chr7 (21-102)||(28384347-28384428)
chr7 (308-412)||(28393146-28393248)
chr7 (573-624)||(36017872-36017923)
chr7 (636-761)||(11283388-11283511)
chr7 (636-777)||(16421580-16421716)
chr7 (573-622)||(16483968-16484017)
chr7 (639-761)||(48187370-48187489)
chr7 (573-617)||(11283478-11283522)
chr7 (636-777)||(21268213-21268351)
chr7 (574-618)||(48187457-48187501)
chr7 (308-355)||(26263005-26263052)
chr7 (308-418)||(28384224-28384332)
chr7 (42-103)||(11283023-11283085)
chr7 (42-103)||(12528357-12528419)
chr7 (42-103)||(16422018-16422080)
chr7 (703-761)||(16483984-16484042)
chr7 (573-622)||(21268302-21268351)
chr7 (493-539)||(11283388-11283435)
chr7 (493-539)||(36017966-36018013)
chr7 (42-103)||(26262835-26262897)
chr7 (42-102)||(48186291-48186352)
[»] chr4 (15 HSPs)
chr4 (308-415)||(52944995-52945102)
chr4 (9-102)||(15426214-15426307)
chr4 (15-102)||(28654140-28654227)
chr4 (308-418)||(28654242-28654350)
chr4 (9-102)||(15419197-15419290)
chr4 (9-102)||(52945117-52945211)
chr4 (636-761)||(15418864-15418986)
chr4 (573-632)||(52944710-52944769)
chr4 (42-103)||(52945211-52945273)
chr4 (573-618)||(28654527-28654572)
chr4 (308-418)||(15419073-15419182)
chr4 (308-418)||(15426090-15426199)
chr4 (493-539)||(28654437-28654484)
chr4 (42-103)||(15419290-15419352)
chr4 (42-103)||(15426307-15426369)
[»] chr6 (14 HSPs)
chr6 (9-102)||(3510110-3510203)
chr6 (308-418)||(3509987-3510095)
chr6 (15-95)||(21441880-21441960)
chr6 (308-418)||(15277995-15278103)
chr6 (9-102)||(24540920-24541013)
chr6 (15-74)||(15278147-15278206)
chr6 (42-103)||(34518338-34518400)
chr6 (23-80)||(34518414-34518471)
chr6 (636-772)||(24540576-24540709)
chr6 (23-74)||(34514465-34514516)
chr6 (363-418)||(24540796-24540851)
chr6 (42-103)||(3510203-3510265)
chr6 (636-682)||(15277902-15277948)
chr6 (42-103)||(24541013-24541075)
[»] chr2 (6 HSPs)
chr2 (9-102)||(2039278-2039371)
chr2 (9-102)||(29962758-29962851)
chr2 (308-413)||(29962866-29962969)
chr2 (308-416)||(2039159-2039263)
chr2 (42-95)||(2039379-2039433)
chr2 (581-618)||(29963192-29963229)
[»] chr1 (12 HSPs)
chr1 (9-102)||(18153672-18153765)
chr1 (308-418)||(18902118-18902226)
chr1 (308-418)||(18153549-18153657)
chr1 (9-102)||(18902241-18902334)
chr1 (636-761)||(18153339-18153462)
chr1 (691-787)||(18901883-18901979)
chr1 (574-632)||(18901883-18901941)
chr1 (573-617)||(18153328-18153372)
chr1 (42-103)||(18153765-18153827)
chr1 (42-103)||(18902334-18902396)
chr1 (493-539)||(18153415-18153462)
chr1 (590-632)||(51783566-51783608)
[»] scaffold0003 (4 HSPs)
scaffold0003 (9-102)||(10637-10730)
scaffold0003 (308-418)||(10514-10622)
scaffold0003 (636-777)||(10292-10428)
scaffold0003 (42-103)||(10730-10792)
[»] scaffold0655 (2 HSPs)
scaffold0655 (308-418)||(7704-7812)
scaffold0655 (9-102)||(7827-7920)
[»] scaffold0172 (4 HSPs)
scaffold0172 (9-84)||(34347-34422)
scaffold0172 (308-416)||(34455-34562)
scaffold0172 (42-103)||(34285-34347)
scaffold0172 (575-618)||(34742-34785)


Alignment Details
Target: chr3 (Bit Score: 180; Significance: 1e-96; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 13230057 - 13229854
Alignment:
Q  106 accaagaaatataggcctgcttgccatcaacaccagaataaatgaagttttccgaaaaaacctgctagtggaggaagacctcctaaggataatagacatg 205  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13230057 accaagaaatataggcctgcttgccatccacaccagaataaatgaagttttccgaaaaaacctgctagtggaggaagacctcctaaggataatagacata 13229958  T
Q  206 gggctaaagagagagtcaaaaaaggatcttttgtgtataatcctgcataatctcgaatgttatcagttccagtatgtagaccaaataacacaatgcaagc 305  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  13229957 gggctaaagagagagccaaaaaaggatcttttgtgtataatcctgcataatctcgaatgttatcggttccggtacgtagaccaaataacacaatgcaagc 13229858  T
Q  306 aaaa 309  Q
    ||||    
T  13229857 aaaa 13229854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 3225107 - 3225014
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||  ||| ||||||| ||||    
T  3225107 attctgaatcatctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcgatggtcagtgccccgccattgggcatt 3225014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 19932995 - 19932887
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  ||||| || || |||||||| ||| |||||||||||||||  |||||||||||||||    
T  19932995 aatgcatgaatgtctccgtaaataccccaccgttgggtaat--ctcctaaaatcaaaagtctaatatcccacctttggatatagttttgaatcaccattt 19932898  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  19932897 tagttacttaa 19932887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 1311846 - 1311753
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| ||| |  ||||||||||| ||||    
T  1311846 attctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcgatgatcaatgccccaccattgggcatt 1311753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 11034620 - 11034713
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| |||||  |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||| ||||    
T  11034620 attctgaatcatttaatgcatatgaattgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatt 11034713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 19933103 - 19933010
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||| ||| |||||| ||||||||||| ||||    
T  19933103 attctgaatcacctaatgcatatgaattgccactaccccaccgttgagtagtaactcctaaaactcgatggtcagtaccccaccattgggcatt 19933010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 3224999 - 3224891
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||| ||||||| ||||||||||||| |||  ||||  ||||| || || |||||||||||| |||||||||||||||  |||||||||||||||    
T  3224999 aatgcatgagtgtctccgtaaataccccaccgttgagtaat--ctcctaaaatcaaaagtctagtatcccacctttggatatagttttgaatcaccattt 3224902  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  3224901 tagttacttaa 3224891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 636 - 775
Target Start/End: Complemental strand, 1311540 - 1311404
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatat 735  Q
    ||||||||||||||||| | |||| ||||||||||||| ||||| ||        ||||| |||||| ||||| || |||| ||||||||||||||| ||    
T  1311540 ccaagataattatcacatcaccaatatataacacatagtattcacttcaaaa---caacaacactataataatcatcacaacacaaatatattcacacat 1311444  T
Q  736 acacctacgaaagtgcgtggagtgatattcttacctttgc 775  Q
    |||| |||| ||| ||||||||||||| |||||| |||||    
T  1311443 acacgtacggaagcgcgtggagtgatactcttacatttgc 1311404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 1311738 - 1311631
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||  ||||||||||||| |||| ||||  ||||  || || |||||||| ||| |||||||||||||||  ||||||||| |||||    
T  1311738 aatgcatgaatgtctctgtaaataccccacc-ttgggtaat--ctccaaaaatcaaaagtctaatatcccacctttggatatagttttgaatcatcattt 1311642  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  1311641 tagttacttaa 1311631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 579 - 632
Target Start/End: Complemental strand, 19932705 - 19932652
Alignment:
Q  579 atacacgtatggaagcgcgtggagtgatacccttacctttgcaatagtagctct 632  Q
    ||||||||| |||||||||||||||||| ||||||||||| |||||||||||||    
T  19932705 atacacgtacggaagcgcgtggagtgatgcccttacctttacaatagtagctct 19932652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 19933165 - 19933103
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| || |||||||||||||||||||||| |||||    
T  19933165 taccccaccattgggtaataactcctaaaaattcgatgttcagtatcccaccattgggcatta 19933103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 787
Target Start/End: Complemental strand, 19932748 - 19932652
Alignment:
Q  691 caacaccactatgataattattacaatacaaatatattcacatatacacctacgaaagtgcgtggagtgatattcttacctttgcaatagtagctct 787  Q
    ||||| |||||| ||||| || || | ||||||||||||| | |||||| |||| ||| ||||||||||||   ||||||||| |||||||||||||    
T  19932748 caacaacactataataatcatcacgacacaaatatattcataaatacacgtacggaagcgcgtggagtgatgcccttacctttacaatagtagctct 19932652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 11034561 - 11034620
Alignment:
Q  45 cccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    |||||| |||||||||||||||| |||| || |||||||||| ||||||||||| |||||    
T  11034561 cccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcatta 11034620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 11034732 - 11034826
Alignment:
Q  312 catgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||  ||||| ||||| |||| | ||||||||||| || ||| |||| |||||| ||||| |||||||||  || ||||||||||||    
T  11034732 catgaatgtctctgtaaatgccccatcattaggtaataactccttaaatct-aagtttagtatcccaccgttggatatagtttagaatcaccattt 11034826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 11034923 - 11034970
Alignment:
Q  493 ccaagataattatcacaacaccaacatacaacacat-atcattcattt 539  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  11034923 ccaagataattatcacaacaccaatatataacacataatcattcattt 11034970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 574 - 620
Target Start/End: Complemental strand, 1311450 - 1311404
Alignment:
Q  574 cacatatacacgtatggaagcgcgtggagtgatacccttacctttgc 620  Q
    |||| ||||||||| |||||||||||||||||||| ||||| |||||    
T  1311450 cacacatacacgtacggaagcgcgtggagtgatactcttacatttgc 1311404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 144; Significance: 3e-75; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 106 - 309
Target Start/End: Complemental strand, 194354 - 194151
Alignment:
Q  106 accaagaaatataggcctgcttgccatcaacaccagaataaatgaagttttccgaaaaaacctgctagtggaggaagacctcctaaggataatagacatg 205  Q
    |||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||| |||||||||||||||||||| ||||||| |||||| ||||||     
T  194354 accaagaaatataggcctgcttgccatccacaccagaatagatagagttttccgaagaaacctgctagtggaggaaggcctcctagggataagagacata 194255  T
Q  206 gggctaaagagagagtcaaaaaaggatcttttgtgtataatcctgcataatctcgaatgttatcagttccagtatgtagaccaaataacacaatgcaagc 305  Q
    ||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||    
T  194254 gggctaaagagagagccaaaaaaggatctttaatgtataatcctgcataatctcgaatgttatcagttccggtacgtagaccaaataatacaatgcaagc 194155  T
Q  306 aaaa 309  Q
    ||||    
T  194154 aaaa 194151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 6e-49; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 308 - 435
Target Start/End: Complemental strand, 6818808 - 6818681
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||  ||| |||||||| ||    
T  6818808 aatgcataaatgtctccataaataccccaccattgggtaataactcctcaactctaaagtctagtatcccacctttggatatagttttaaatcaccaatt 6818709  T
Q  408 tagttacttaacaagtaatatttatgtt 435  Q
    ||||||||||||||||||||||||||||    
T  6818708 tagttacttaacaagtaatatttatgtt 6818681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 5536789 - 5536882
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  5536789 attctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccattgggcatt 5536882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 636 - 875
Target Start/End: Complemental strand, 44668948 - 44668713
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatat 735  Q
    ||||||||||||||||| | |||| ||||| |||||| |||||| ||        ||||| |||||||||||| || |||| ||||||||||||||| ||    
T  44668948 ccaagataattatcacatcaccaatatatagcacataacattcacttcaaa----caacaacactatgataatcatcacaacacaaatatattcacacat 44668853  T
Q  736 acacctacgaaagtgcgtggagtgatattcttacctttgcaatagtagctctcaacttttcacgcatcagtcttggctatactaccttacaaccttcaca 835  Q
    |||| |||| ||| |||| |||||||   ||||||||| ||||||  | |||||||| || | ||| ||||||||| |||||||||| ||||||||||||    
T  44668852 acacgtacggaagcgcgtagagtgatgcccttacctttacaatagctgttctcaactctttatgcagcagtcttggttatactacctcacaaccttcaca 44668753  T
Q  836 aataagtatttacctaacttagtttc-aacttcgggtactc 875  Q
    |||||  || || ||||||||||||| ||||| ||||||||    
T  44668752 aataaagatgta-ctaacttagtttcaaacttagggtactc 44668713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 6818910 - 6818824
Alignment:
Q  15 aatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacat 101  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||| ||| |||||||||||||||    
T  6818910 aatcacctaatgcatatgaatcgtcactaccccatcattgggtaataactcctaaaactcgatgttcggtaccccaccattggacat 6818824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 5536897 - 5537005
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||| || ||| | ||||||||| ||| | |||||||||  || ||||||||| ||    
T  5536897 aatgcatgaatgtctccgtaaatacctcaccattggataataactccttaaatct-aggtctagtatcccagcgttggatatagtttagaatcacca-tt 5536994  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  5536995 tagttacttaa 5537005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 3897106 - 3897212
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||  |||| ||||  ||||| || || ||||||||||||  ||||||||||||||  ||||||||||||||     
T  3897106 aatgcatgaatgtctccttaaataccccactgttgggtaat--ctcctaaaatcaaaagtctagtatctcacctttggatatagttttgaatcaccatta 3897203  T
Q  408 tagttactt 416  Q
    |||||||||    
T  3897204 tagttactt 3897212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 44669252 - 44669159
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||| | ||||||||||||||| |||||||||||| ||||||| ||||||||||||||| ||| |||||  ||||||||||| ||||    
T  44669252 attctgaatcatcaaatgcatatgaatcgccactaccccaccattgggtagtaactcctaaaactcgatggtcagtgccccaccattgggcatt 44669159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 641 - 761
Target Start/End: Complemental strand, 6818622 - 6818504
Alignment:
Q  641 ataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatatacacc 740  Q
    ||||||||||||||  |||||||||||| ||| |||||||||        ||||||||||||||||||||| ||||||||||||||| || ||||||||     
T  6818622 ataattatcacaacaacaacatataacagataacattcatttcaaaaa--caacaccactatgataattatcacaatacaaatatatacaaatatacacg 6818525  T
Q  741 tacgaaagtgcgtggagtgat 761  Q
    |||  ||| ||||||||||||    
T  6818524 tacataagcgcgtggagtgat 6818504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 44669144 - 44669035
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaac-tctaaagtctagtataccacctttggatataactttgaatcaccatt 406  Q
    ||||||||||||||||| |||||||||| || |||| ||||  ||||  ||  || |||||||| ||| |||||||||||||||| ||||||||||||||    
T  44669144 aatgcatgaatgtctccgtaaatacccctccgttgggtaat--ctccaaaaaatcaaaagtctaatatcccacctttggatataattttgaatcaccatt 44669047  T
Q  407 ttagttacttaa 418  Q
    ||||||| ||||    
T  44669046 ttagttagttaa 44669035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 575 - 632
Target Start/End: Original strand, 3897395 - 3897452
Alignment:
Q  575 acatatacacgtatggaagcgcgtggagtgatacccttacctttgcaatagtagctct 632  Q
    ||||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||    
T  3897395 acatatacacgtacggaaacacgtggagtgatacccttacctttacaatagtagctct 3897452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 636 - 777
Target Start/End: Original strand, 5537092 - 5537231
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatag-cattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacata 734  Q
    ||||||||||||||||||| |||  ||||||||||||  |||||||||        |||||||| |||||||||||| || | |||| ||||| ||||||    
T  5537092 ccaagataattatcacaacaccactatataacacataatcattcatttcaaaa---caacaccattatgataattatcactacacaattatatacacata 5537188  T
Q  735 tacacctacgaaagtgcgtggagtgatattcttacctttgcaa 777  Q
    ||||| |||| ||| ||||||||||||  | ||||||||||||    
T  5537189 tacacgtacggaagcgcgtggagtgatgctgttacctttgcaa 5537231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 97
Target Start/End: Original strand, 3896998 - 3897086
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattgg 97  Q
    ||||| |||||| |||||||||||||| | |||||||||||||||||||| |||||  |||||||| ||  ||| | ||||||||||||    
T  3896998 attctgaatcacgtaatgcatatgaattgccactaccccaccgttgggtagtaacttttaaaactcgattgtcaatgtcccaccattgg 3897086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 44669314 - 44669252
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| |||||||||||||||||    
T  44669314 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattggacatta 44669252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 622
Target Start/End: Original strand, 5537182 - 5537231
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaa 622  Q
    ||||||||||||||| |||||||||||||||||| |  ||||||||||||    
T  5537182 acacatatacacgtacggaagcgcgtggagtgatgctgttacctttgcaa 5537231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 574 - 625
Target Start/End: Complemental strand, 44668859 - 44668808
Alignment:
Q  574 cacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaatag 625  Q
    |||| ||||||||| |||||||||| ||||||| ||||||||||| ||||||    
T  44668859 cacacatacacgtacggaagcgcgtagagtgatgcccttacctttacaatag 44668808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 2e-36; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 106 - 220
Target Start/End: Complemental strand, 10411621 - 10411507
Alignment:
Q  106 accaagaaatataggcctgcttgccatcaacaccagaataaatgaagttttccgaaaaaacctgctagtggaggaagacctcctaaggataatagacatg 205  Q
    ||||| ||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||| ||||     
T  10411621 accaataaatataggtctgcttgccatccacaccagaataaatgaagttttcagaaaaaacctgatagtggaggaagacatcctaacgataataaacata 10411522  T
Q  206 gggctaaagagagag 220  Q
    |||||||||||||||    
T  10411521 gggctaaagagagag 10411507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 36018311 - 36018224
Alignment:
Q  15 aatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||||||||    
T  36018311 aatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttggacatt 36018224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 12502789 - 12502882
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||| ||||    
T  12502789 attctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatt 12502882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 9 - 92
Target Start/End: Original strand, 11283085 - 11283168
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccacc 92  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||    
T  11283085 attctgaatcatctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcgatgtttagtaccccacc 11283168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 691 - 840
Target Start/End: Original strand, 12528775 - 12528924
Alignment:
Q  691 caacaccactatgataattattacaatacaaatatattcacatatacacctacgaaagtgcgtggagtgatattcttacctttgcaatagtagctctcaa 790  Q
    |||||||| ||||| |||||| | || |||| ||||| ||||||||||| |||| ||| ||||||||||||   |||||||||||||||  || ||||||    
T  12528775 caacaccattatgacaattatcataacacaattatatacacatatacacgtacggaagcgcgtggagtgatgcccttacctttgcaataacagttctcaa 12528874  T
Q  791 cttttcacgcatcagtcttggctatactaccttacaaccttcacaaataa 840  Q
    ||||| | ||| ||||||||| |||||||||| |||||||| ||||||||    
T  12528875 ctttttatgcagcagtcttggttatactacctcacaaccttaacaaataa 12528924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 12528419 - 12528501
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccac 91  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||    
T  12528419 attctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtaataactcctaaaactcgatgttcggtaccccac 12528501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 16422018 - 16421925
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||| ||| |||||  ||||||||||||||||    
T  16422018 attctgaatcacctaattcatatgaatcgccactatcccaccgttgggtagtaactcctaaaactcgatggtcagtgccccaccattggacatt 16421925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 308 - 435
Target Start/End: Complemental strand, 16484220 - 16484097
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| |||||||||||||   || ||||  ||||| || || |||||||| ||| ||| |||||||||||  |||||||| ||||||    
T  16484220 aatgcatgaatgtctccgtaaataccccaccg--gggtaat--ctcctaaaatcaaaagtctaatatcccatctttggatatagttttgaatcgccattt 16484125  T
Q  408 tagttacttaacaagtaatatttatgtt 435  Q
    ||||||||||||||||||||||||||||    
T  16484124 tagttacttaacaagtaatatttatgtt 16484097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 16421910 - 16421802
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  ||||  || || |||||||| ||| |||||||||||||||  |||||||||||||||    
T  16421910 aatgcatgaatgtctccgtaaataccccaccgttgggtaat--ctccaaaaatcaaaagtctaatatcccacctttggatatagttttgaatcaccattt 16421813  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  16421812 tagttacttaa 16421802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 90
Target Start/End: Original strand, 26262903 - 26262978
Alignment:
Q  15 aatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatccca 90  Q
    ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  26262903 aatcatctaatgcatatgaatcgtcactatcccaccattgggtaataactcctaaaactcgatgttcagtacccca 26262978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 102
Target Start/End: Complemental strand, 28393350 - 28393263
Alignment:
Q  15 aatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||||| ||| |||||  ||||||||||| ||||    
T  28393350 aatcatctaatgcatatgaatcgctactaccccaccgttgggtaataactcctaaaactcgatggtcagtgccccaccattgggcatt 28393263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 12528527 - 12528635
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| |||||||||||||||||| ||| ||||||| || ||| ||||||||||| ||||| |||||||||  || ||||||||| ||    
T  12528527 aatgcatgaatgtctccgtaaataccccaccattgggtaacaactccttaaatct-aagtctagtatcccaccgttggatatagtttagaatcacca-tt 12528624  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  12528625 tagttacttaa 12528635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 308 - 390
Target Start/End: Complemental strand, 36018209 - 36018128
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatata 390  Q
    ||||||||||||||||  ||||||||||||||||| |||||||||||| || ||| |||||||||||||||||||||||||||    
T  36018209 aatgcatgaatgtctctgtaaataccccaccattgaataataactccttaaatct-aagtctagtataccacctttggatata 36018128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 10 - 102
Target Start/End: Original strand, 48186354 - 48186446
Alignment:
Q  10 ttctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    |||| ||||| |||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| ||| |||||  ||||||||||| ||||    
T  48186354 ttctgaatcatctaatgcatatgaatcgtcactacaccaccattgggtagtaactcctaaaactcgatggtcagtgccccaccattgggcatt 48186446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 21267912 - 21267987
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagt 84  Q
    ||||| ||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||    
T  21267912 attctgaatcatctaatgcatatgaatcgtcactaccccaccattgggtagtaactcctaaaactcgatggtcagt 21267987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 48186461 - 48186569
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||| ||||| ||||||||||||| ||||||||  |||||| || || |||||||| ||  ||||| |||||||||  |||||||||||||||    
T  48186461 aatgcatgaatatctccgtaaataccccaccgttggataa--actcctaaaatcaaaagtctaataccccaccattggatatagttttgaatcaccattt 48186558  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  48186559 tagttacttaa 48186569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 308 - 390
Target Start/End: Original strand, 11283193 - 11283274
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatata 390  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || |||||| |||||||| ||||| |||||||||    
T  11283193 aatgcatgaatgtctccgtaaataccccaccattgggtaataactccttaattctaaa-tctagtatcccaccattggatata 11283274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 16484328 - 16484235
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||| ||||||||||||| ||||||| |||||||||||| |||||||||||||||  || |||||  ||||||||||| ||||    
T  16484328 attctgaatcacctagtgcatatgaatcgccactacctcaccgttgggtagtaactcctaaaactcggtgatcagtgccccaccattgggcatt 16484235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 21268020 - 21268127
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||| ||||| ||||||||||||| |||| |||   ||||| || || |||||||| ||| ||||| |||||||||  |||||||||||||||    
T  21268020 aatgcatgaatatctccgtaaataccccaccgttgggtaa---ctcctaaaatcaaaagtctaatatcccaccattggatatagttttgaatcaccattt 21268116  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  21268117 tagttacttaa 21268127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 636 - 779
Target Start/End: Complemental strand, 36018013 - 36017872
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatag-cattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacata 734  Q
    ||||||||||||||||||| |||| ||||||||||||  |||||||||        |||||||| |||||||||||| |||| |||| ||||| ||||||    
T  36018013 ccaagataattatcacaacaccaatatataacacataatcattcatttcaaaa---caacaccaatatgataattatcacaacacaattatatacacata 36017917  T
Q  735 tacacctacgaaagtgcgtggagtgatattcttacctttgcaata 779  Q
    ||||| |||| |||  |||||||||||   |||||||||||||||    
T  36017916 tacacgtacggaagcacgtggagtgatgcccttacctttgcaata 36017872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 12502897 - 12503005
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| |||||||| ||||||||  ||| ||||||| || ||| ||||||||||| ||||| |||||||||  || ||||||||| ||    
T  12502897 aatgcatgaatgtctccgtaaatacctcaccattgagtaacaactccttaaatct-aagtctagtattccaccgttggatatagtttagaatcacca-tt 12502994  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  12502995 tagttacttaa 12503005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 573 - 624
Target Start/End: Original strand, 12528812 - 12528863
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaata 624  Q
    ||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  12528812 acacatatacacgtacggaagcgcgtggagtgatgcccttacctttgcaata 12528863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 28384428 - 28384347
Alignment:
Q  21 ctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    |||||||||||||||||  || ||||||||| |||||||||| ||||||||||| ||| |||||  ||||||||||| ||||    
T  28384428 ctaatgcatatgaatcgctaccaccccaccgctgggtaataaatcctaaaactcgatggtcagtgccccaccattgggcatt 28384347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 308 - 412
Target Start/End: Complemental strand, 28393248 - 28393146
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    |||||||||| |||||| ||||||||||||| |||| ||||  ||| | || || ||||| |||||| |||||||||||||||  |||||||||| ||||    
T  28393248 aatgcatgaaagtctccgtaaataccccaccgttgggtaat--ctcataaaatcaaaagtttagtatcccacctttggatatagttttgaatcacaattt 28393151  T
Q  408 tagtt 412  Q
    |||||    
T  28393150 tagtt 28393146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 36017923 - 36017872
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaata 624  Q
    ||||||||||||||| |||||| ||||||||||| |||||||||||||||||    
T  36017923 acacatatacacgtacggaagcacgtggagtgatgcccttacctttgcaata 36017872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 636 - 761
Target Start/End: Original strand, 11283388 - 11283511
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatag-cattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacata 734  Q
    ||||||||||||||||||| |||| ||||||||||||  |||||||||        ||||| || |||||||||||| |||| |||| ||||  ||||||    
T  11283388 ccaagataattatcacaacaccaatatataacacataatcattcatttctaaa---caacatcattatgataattatcacaacacaattatacacacata 11283484  T
Q  735 tacacctacgaaagtgcgtggagtgat 761  Q
    ||||| |||| ||| ||||||||||||    
T  11283485 tacacgtacggaagcgcgtggagtgat 11283511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 636 - 777
Target Start/End: Complemental strand, 16421716 - 16421580
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatat 735  Q
    ||||||||||||||||| | |||| ||||||||||||||||||| ||        ||||| |||||||||||| || |||| ||||  ||| ||||| ||    
T  16421716 ccaagataattatcacatcaccaatatataacacatagcattcactt---caaaacaacaacactatgataatcatcacaacacaa--atagtcacacat 16421622  T
Q  736 acacctacgaaagtgcgtggagtgatattcttacctttgcaa 777  Q
    |||| |||| | ||||||||||||||   |||||||||||||    
T  16421621 acacgtacggacgtgcgtggagtgatgcccttacctttgcaa 16421580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 573 - 622
Target Start/End: Complemental strand, 16484017 - 16483968
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaa 622  Q
    ||||||||||||||| |||||||||||||||||| |||||||||| ||||    
T  16484017 acacatatacacgtacggaagcgcgtggagtgatgcccttaccttcgcaa 16483968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 639 - 761
Target Start/End: Original strand, 48187370 - 48187489
Alignment:
Q  639 agataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatataca 738  Q
    |||||||||||||| | |||| ||||| ||||||||||||| ||        ||||| |||||||||||| || |||| ||||||||||||||| |||||    
T  48187370 agataattatcacatcaccaatatatagcacatagcattcacttcaaaa---caacaacactatgataatcatcacaacacaaatatattcacacataca 48187466  T
Q  739 cctacgaaagtgcgtggagtgat 761  Q
    | || | ||| ||||||||||||    
T  48187467 cgtatggaagcgcgtggagtgat 48187489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 617
Target Start/End: Original strand, 11283478 - 11283522
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctt 617  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  11283478 acacatatacacgtacggaagcgcgtggagtgatgcccttacctt 11283522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 777
Target Start/End: Original strand, 21268213 - 21268351
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatat 735  Q
    ||||||||||||||||| | |||| ||||| ||||||||| ||||||        ||||| |||||| ||||| || |||| |||||||||| |||| ||    
T  21268213 ccaagataattatcacatcaccaatatatagcacatagcactcatttcaaaa---caacaacactataataatcatcacaacacaaatatatacacacat 21268309  T
Q  736 acacctacgaaagtgcgtggagtgatattcttacctttgcaa 777  Q
    |||| |||| ||| ||||| ||||||   |||||||||||||    
T  21268310 acacgtacggaagcgcgtgaagtgatgcccttacctttgcaa 21268351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 48187457 - 48187501
Alignment:
Q  574 cacatatacacgtatggaagcgcgtggagtgatacccttaccttt 618  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  48187457 cacacatacacgtatggaagcgcgtggagtgatgcccttaccttt 48187501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 26263005 - 26263052
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcct 355  Q
    ||||||||||||||||  |||||||||||||||||| |||||||||||    
T  26263005 aatgcatgaatgtctcggtaaataccccaccattgggtaataactcct 26263052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 28384332 - 28384224
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    |||||||||| || ||| ||||||| ||||| |||| ||||   |||| || || ||||| |||||| |||||||||||||||  ||||||| |||||||    
T  28384332 aatgcatgaaagtatccgtaaatactccaccgttgggtaatt--tcctaaaatcaaaagtttagtatcccacctttggatatagttttgaattaccattt 28384235  T
Q  408 tagttacttaa 418  Q
    ||||| |||||    
T  28384234 tagttgcttaa 28384224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 11283023 - 11283085
Alignment:
Q  42 taccccaccgttgggtaataactcctaaaact-caatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||| ||||||| | | |||||||||| |||||||||||||||||    
T  11283023 taccccaccattgggtaataacacctaaaaattcgatgttcagtaccccaccattggacatta 11283085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 12528357 - 12528419
Alignment:
Q  42 taccccaccgttgggtaataactcctaaaact-caatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||| ||||||||||||||| | |||| ||||||| |||||||||||||||||    
T  12528357 taccccaccattggataataactcctaaaaattcaattttcagtaccccaccattggacatta 12528419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 16422080 - 16422018
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| ||||||||||| |||||    
T  16422080 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcatta 16422018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 703 - 761
Target Start/End: Complemental strand, 16484042 - 16483984
Alignment:
Q  703 gataattattacaatacaaatatattcacatatacacctacgaaagtgcgtggagtgat 761  Q
    ||||||||| |||| |||||||||| ||||||||||| |||| ||| ||||||||||||    
T  16484042 gataattatcacaacacaaatatatacacatatacacgtacggaagcgcgtggagtgat 16483984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 622
Target Start/End: Original strand, 21268302 - 21268351
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaa 622  Q
    ||||| ||||||||| ||||||||||| |||||| |||||||||||||||    
T  21268302 acacacatacacgtacggaagcgcgtgaagtgatgcccttacctttgcaa 21268351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 11283388 - 11283435
Alignment:
Q  493 ccaagataattatcacaacaccaacatacaacacat-atcattcattt 539  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  11283388 ccaagataattatcacaacaccaatatataacacataatcattcattt 11283435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 36018013 - 36017966
Alignment:
Q  493 ccaagataattatcacaacaccaacatacaacacat-atcattcattt 539  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  36018013 ccaagataattatcacaacaccaatatataacacataatcattcattt 36017966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 26262835 - 26262897
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| |  |||||||||| ||||||||||| |||||    
T  26262835 taccccaccattgggtaataactcctaaaaattggatgttcagtaccccaccattgggcatta 26262897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 102
Target Start/End: Original strand, 48186291 - 48186352
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| |||| |||||| ||||    
T  48186291 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccatcattgggcatt 48186352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 7e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 52945102 - 52944995
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||| |||||||||||||||||||||||| || |||||||||  |||||| ||||||||| |||||||||||||||   ||||||||||||||    
T  52945102 aatgcatgaatatctccataaataccccaccattgggtactaactcctcgcctctaaggtctagtatcccacctttggatatagtgttgaatcaccattt 52945003  T
Q  408 tagttact 415  Q
    ||||||||    
T  52945002 tagttact 52944995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 15426307 - 15426214
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| ||| |||||  ||||||||||| ||||    
T  15426307 attctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaattcctaaaactcgatggtcagtgccccaccattgggcatt 15426214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 15 - 102
Target Start/End: Original strand, 28654140 - 28654227
Alignment:
Q  15 aatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| | |||| |||||||||    
T  28654140 aatcatctaatgtatatgaatcgtcactaccctaccattgggtaataactcctaaaactcgatgttcagtacctcaccgttggacatt 28654227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Original strand, 28654242 - 28654350
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||| || ||| ||||||||||| ||| | |||||||||  || ||||||||| ||    
T  28654242 aatgcatgaatgtctccgtaaataccccaccattgggtaataactccttaaatct-aagtctagtatcccatcgttggatatagtttagaatcacca-tt 28654339  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  28654340 tagttacttaa 28654350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 15419290 - 15419197
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| || ||| |||||  ||||||||||| ||||    
T  15419290 attctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcttaaaaatcgatggtcagtgccccaccattgggcatt 15419197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 52945211 - 52945117
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagta-tcccaccattggacatt 102  Q
    ||||| |||||||||||||||||||||||| || ||||||| |||||||||| ||||||||||||  ||||||||||  ||||||||||| ||||    
T  52945211 attctgaatcacctaatgcatatgaatcgttaccaccccactgttgggtaatgactcctaaaacttgatgttcagtacccccaccattgggcatt 52945117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 636 - 761
Target Start/End: Complemental strand, 15418986 - 15418864
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatat 735  Q
    ||||||||||||||||| | |||| |||||| |||||||||||| ||        ||||| |||||||||||| || |||| ||||||||||||||| ||    
T  15418986 ccaagataattatcacatcaccaatatataaaacatagcattcacttcaaaa---caacaacactatgataatcatcacaacacaaatatattcacacat 15418890  T
Q  736 acacctacgaaagtgcgtggagtgat 761  Q
    | || |||| ||| | ||||||||||    
T  15418889 atacgtacggaagcgtgtggagtgat 15418864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 573 - 632
Target Start/End: Complemental strand, 52944769 - 52944710
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaatagtagctct 632  Q
    ||||||||||| ||| ||||||| |||||||||| ||||||||||  |||||||||||||    
T  52944769 acacatatacatgtacggaagcgtgtggagtgatgcccttaccttctcaatagtagctct 52944710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 52945273 - 52945211
Alignment:
Q  42 taccccaccgttgggtaataactcctaaaact-caatgttcagtatcccaccattggacatta 103  Q
    |||||||||||||| |||||||| |||||| | |||||||| ||||||||||||||| |||||    
T  52945273 taccccaccgttggataataacttctaaaaattcaatgttcggtatcccaccattggccatta 52945211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 573 - 618
Target Start/End: Original strand, 28654527 - 28654572
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttaccttt 618  Q
    ||||||||||||||| |||| ||||||||||||| |||||||||||    
T  28654527 acacatatacacgtacggaaacgcgtggagtgatgcccttaccttt 28654572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 15419182 - 15419073
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaac-tctaaagtctagtataccacctttggatataactttgaatcaccatt 406  Q
    |||||||||| |||||  ||||||||||||| |||| ||||  ||||  ||  || |||||||| ||| |||||||||||||||  |||||||| |||||    
T  15419182 aatgcatgaaagtctctttaaataccccaccgttgggtaat--ctccaaaaaatcaaaagtctaatatcccacctttggatatagttttgaatcgccatt 15419085  T
Q  407 ttagttacttaa 418  Q
    | ||||||||||    
T  15419084 tcagttacttaa 15419073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 15426199 - 15426090
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaac-tctaaagtctagtataccacctttggatataactttgaatcaccatt 406  Q
    |||||||||| |||||  ||||||||||||| |||| ||||  ||||  ||  || |||||||| ||| |||||||||||||||  |||||||| |||||    
T  15426199 aatgcatgaaagtctctttaaataccccaccgttgggtaat--ctccaaaaaatcaaaagtctaatatcccacctttggatatagttttgaatcgccatt 15426102  T
Q  407 ttagttacttaa 418  Q
    | ||||||||||    
T  15426101 tcagttacttaa 15426090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 539
Target Start/End: Original strand, 28654437 - 28654484
Alignment:
Q  493 ccaagataattatcacaacaccaacatacaacacat-atcattcattt 539  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  28654437 ccaagataattatcacaacaccaatatataacacataatcattcattt 28654484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 15419352 - 15419290
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| ||  ||||||||| ||||||||||| |||||    
T  15419352 taccccaccattgggtaataactcctaaaaattcggtgttcagtaccccaccattgggcatta 15419290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 15426369 - 15426307
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| ||  ||||||||| ||||||||||| |||||    
T  15426369 taccccaccattgggtaataactcctaaaaattcggtgttcagtaccccaccattgggcatta 15426307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 1e-28; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 3510203 - 3510110
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||| |||||| ||||||||||| ||||    
T  3510203 attctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcgatggtcagtaccccaccattgggcatt 3510110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 3510095 - 3509987
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  ||||  || || |||||||| ||| |||||||||||||||  |||||||||||||||    
T  3510095 aatgcatgaatgtctccgtaaataccccaccgttgggtaat--ctccaaaaatcaaaagtctaatatcccacctttggatatagttttgaatcaccattt 3509998  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  3509997 tagttacttaa 3509987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 21441960 - 21441880
Alignment:
Q  15 aatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccatt 95  Q
    |||||||||||||||||||||||||| ||||||||  |||| |||||||||||||||||| ||||||| || |||||||||    
T  21441960 aatcacctaatgcatatgaatcgtcaataccccactattggataataactcctaaaactcgatgttcaataccccaccatt 21441880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 15278103 - 15277995
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  ||||| || |  |||||||||||| |||||||||||||||  |||||||||||||||    
T  15278103 aatgcatgaatgtctccgtaaataccccaccgttgggtaat--ctcctaaaattaaaagtctagtatcccacctttggatatagttttgaatcaccattt 15278006  T
Q  408 tagttacttaa 418  Q
     |||| |||||    
T  15278005 aagttgcttaa 15277995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 24541013 - 24540920
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||| || ||||| || ||| |||||  ||||||||||| ||||    
T  24541013 attctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaaatcataaaaatcgatggtcagtgccccaccattgggcatt 24540920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 15278206 - 15278147
Alignment:
Q  15 aatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactc 74  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  15278206 aatcacctaatgcatatgaatcgccactaccccaccgttgggtaataactcacaaaactc 15278147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 34518338 - 34518400
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| |||||||||||||||||    
T  34518338 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattggacatta 34518400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 34518414 - 34518471
Alignment:
Q  23 aatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgtt 80  Q
    |||| ||||||||||||||||||| ||| ||||| | |||||||||||||||||||||    
T  34518414 aatgtatatgaatcgtcactaccctaccattgggcagtaactcctaaaactcaatgtt 34518471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 636 - 772
Target Start/End: Complemental strand, 24540709 - 24540576
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatat 735  Q
    ||||||||||||||||| | |||| |||||| |||||||||||| ||        ||||| || ||||||||| || |||| ||||||||||||||| ||    
T  24540709 ccaagataattatcacatcaccaatatataaaacatagcattcacttcaaaa---caacaacaatatgataatcatcacaacacaaatatattcacacat 24540613  T
Q  736 acacctacgaaagtgcgtggagtgatattcttacctt 772  Q
    | || |||| ||| | |||||||||||  ||||||||    
T  24540612 aaacgtacggaagcgtgtggagtgatacccttacctt 24540576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 74
Target Start/End: Original strand, 34514465 - 34514516
Alignment:
Q  23 aatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactc 74  Q
    ||||||||||||| |||||||||| ||| ||||||| |||||||||||||||    
T  34514465 aatgcatatgaatggtcactaccctaccattgggtagtaactcctaaaactc 34514516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 24540851 - 24540796
Alignment:
Q  363 aaagtctagtataccacctttggatataactttgaatcaccattttagttacttaa 418  Q
    |||||||| ||| |||||||||||||||  |||||||| |||||| ||||||||||    
T  24540851 aaagtctaatatcccacctttggatatagttttgaatcgccatttcagttacttaa 24540796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 3510265 - 3510203
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| |  |||||||||| ||||||||||| |||||    
T  3510265 taccccaccattgggtaataactcctaaaaatttgatgttcagtaccccaccattgggcatta 3510203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 636 - 682
Target Start/End: Complemental strand, 15277948 - 15277902
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcattt 682  Q
    ||||||||||||||| | | |||| ||||||||||||||||||||||    
T  15277948 ccaagataattatcataccaccaatatataacacatagcattcattt 15277902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 24541075 - 24541013
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| ||  ||||||||| ||||||||||| |||||    
T  24541075 taccccaccattgggtaataactcctaaaaattcggtgttcagtaccccaccattgggcatta 24541013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 2039371 - 2039278
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||  ||||| |||||||||||| ||||    
T  2039371 attctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaactcaatagtcagtgtcccaccattgggcatt 2039278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 29962758 - 29962851
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |||||| |||||  || |||||||| ||||    
T  29962758 attctgaatcacctaatgcatatgaatcgccactaccccaccgttgggtagtaactcctaaaattcaatggtcagtgccctaccattgggcatt 29962851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 308 - 413
Target Start/End: Original strand, 29962866 - 29962969
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  ||| | ||  | |||||||||||| |||||||||||||||  ||||||||||||||     
T  29962866 aatgcatgaatgtctccttaaataccccaccgttgggtaat--ctcataaaaacaaaagtctagtatcccacctttggatatagttttgaatcaccatta 29962963  T
Q  408 tagtta 413  Q
    ||||||    
T  29962964 tagtta 29962969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 308 - 416
Target Start/End: Complemental strand, 2039263 - 2039159
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  ||||| || | |||| |||||||| |||||||||||||||  ||||||||||||||     
T  2039263 aatgcatgaatgtctccttaaataccccaccgttgggtaat--ctcctaaaat-taaa-tctagtatcccacctttggatatagttttgaatcaccatta 2039168  T
Q  408 tagttactt 416  Q
    |||||||||    
T  2039167 tagttactt 2039159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 2039433 - 2039379
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccatt 95  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| |||||||||    
T  2039433 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccatt 2039379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 29963192 - 29963229
Alignment:
Q  581 acacgtatggaagcgcgtggagtgatacccttaccttt 618  Q
    ||||||| ||||||||||||||||||| ||||||||||    
T  29963192 acacgtacggaagcgcgtggagtgatatccttaccttt 29963229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 18153765 - 18153672
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||| |||||| |||| ||||    
T  18153765 attctgaatcatctaatgcatatgaatcgtcattaccccaccattgggtaataactcctaaaactcgatgttcagtaccccaccgttgggcatt 18153672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 18902226 - 18902118
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||| ||| | |||| ||||  ||||| || || |||||||| |||||||||||||||||||  |||||||||||||||    
T  18902226 aatgcatgaatgtctccgtaaatactccatcgttgggtaat--ctcctaaaatcaaaagtctaatataccacctttggatatagttttgaatcaccattt 18902129  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  18902128 tagttacttaa 18902118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 18153657 - 18153549
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||| ||||||| |||||||||||||||||| ||||||||||| || ||| ||||||||||| ||||| |||||||||  || ||||||||| ||    
T  18153657 aatgcatgattgtctccgtaaataccccaccattgggtaataactccttaaatct-aagtctagtatcccaccattggatatagtttagaatcacca-tt 18153560  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  18153559 tagttacttaa 18153549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 18902334 - 18902241
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||| |||| ||||||||||||||| ||| | |||| ||||||||||| ||||    
T  18902334 attctgaatcacctaatgcatatgaattgccactaccccaccgttcggtagtaactcctaaaactcgatggtaagtaccccaccattgggcatt 18902241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 636 - 761
Target Start/End: Complemental strand, 18153462 - 18153339
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatag-cattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacata 734  Q
    ||||||||||||||||||| |||| ||||||||||||  |||||||||        |||||||| |||||||||||| || | |||| ||||| ||||||    
T  18153462 ccaagataattatcacaacaccaatatataacacataatcattcatttcaaaa---caacaccattatgataattatcaccacacaattatatacacata 18153366  T
Q  735 tacacctacgaaagtgcgtggagtgat 761  Q
    ||||| |||| ||| ||||||||||||    
T  18153365 tacacgtacggaagcgcgtggagtgat 18153339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 691 - 787
Target Start/End: Complemental strand, 18901979 - 18901883
Alignment:
Q  691 caacaccactatgataattattacaatacaaatatattcacatatacacctacgaaagtgcgtggagtgatattcttacctttgcaatagtagctct 787  Q
    ||||| |||||| ||||| || |||| ||||||||||||||| |||||| |||| ||| ||||||| |||||  ||||||||||||| |||| ||||    
T  18901979 caacaacactataataatcatcacaacacaaatatattcacaaatacacgtacggaagcgcgtggaatgatacccttacctttgcaacagtaactct 18901883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 574 - 632
Target Start/End: Complemental strand, 18901941 - 18901883
Alignment:
Q  574 cacatatacacgtatggaagcgcgtggagtgatacccttacctttgcaatagtagctct 632  Q
    |||| ||||||||| ||||||||||||| |||||||||||||||||||| |||| ||||    
T  18901941 cacaaatacacgtacggaagcgcgtggaatgatacccttacctttgcaacagtaactct 18901883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 573 - 617
Target Start/End: Complemental strand, 18153372 - 18153328
Alignment:
Q  573 acacatatacacgtatggaagcgcgtggagtgatacccttacctt 617  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||    
T  18153372 acacatatacacgtacggaagcgcgtggagtgatgcccttacctt 18153328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 18153827 - 18153765
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| ||||||||||| |||||    
T  18153827 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcatta 18153765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 18902396 - 18902334
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| ||||||||||| |||||    
T  18902396 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcatta 18902334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 539
Target Start/End: Complemental strand, 18153462 - 18153415
Alignment:
Q  493 ccaagataattatcacaacaccaacatacaacacat-atcattcattt 539  Q
    |||||||||||||||||||||||| ||| ||||||| |||||||||||    
T  18153462 ccaagataattatcacaacaccaatatataacacataatcattcattt 18153415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 590 - 632
Target Start/End: Original strand, 51783566 - 51783608
Alignment:
Q  590 gaagcgcgtggagtgatacccttacctttgcaatagtagctct 632  Q
    ||||| ||||||||||| || ||||||||||||||||||||||    
T  51783566 gaagcacgtggagtgatgcctttacctttgcaatagtagctct 51783608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 58; Significance: 7e-24; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 10730 - 10637
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| ||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||| ||| |||||  ||||||||||||||||    
T  10730 attctgaatcacctaattcatatgaatcgccactatcccaccgttgggtagtaactcctaaaactcgatggtcagtgccccaccattggacatt 10637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 10622 - 10514
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||||||||||| ||||||||||||| |||| ||||  ||||  || || |||||||| ||| |||||||||||||||  |||||||||||||||    
T  10622 aatgcatgaatgtctccgtaaataccccaccgttgggtaat--ctccaaaaatcaaaagtctaatatcccacctttggatatagttttgaatcaccattt 10525  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  10524 tagttacttaa 10514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 636 - 777
Target Start/End: Complemental strand, 10428 - 10292
Alignment:
Q  636 ccaagataattatcacaacgccaacatataacacatagcattcatttnnnnnnnncaacaccactatgataattattacaatacaaatatattcacatat 735  Q
    ||||||||||||||||| | |||| ||||||||||||||||||| ||        ||||| |||||||||||| || |||| ||||  ||| ||||| ||    
T  10428 ccaagataattatcacatcaccaatatataacacatagcattcactt---caaaacaacaacactatgataatcatcacaacacaa--atagtcacacat 10334  T
Q  736 acacctacgaaagtgcgtggagtgatattcttacctttgcaa 777  Q
    |||| |||| | ||||||||||||||   |||||||||||||    
T  10333 acacgtacggacgtgcgtggagtgatgcccttacctttgcaa 10292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 10792 - 10730
Alignment:
Q  42 taccccaccgttgggtaataactcct-aaaactcaatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||||||||||||||| |||| || |||||||||| ||||||||||| |||||    
T  10792 taccccaccattgggtaataactcctaaaaattcgatgttcagtaccccaccattgggcatta 10730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 308 - 418
Target Start/End: Complemental strand, 7812 - 7704
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaactctaaagtctagtataccacctttggatataactttgaatcaccattt 407  Q
    ||||||||| | |||||||||||||||||||||||  ||||  ||| |||| | |||| |||||||| |||||||| ||||||  |||||||||||||||    
T  7812 aatgcatgactatctccataaataccccaccattgactaat--ctcgtcaaatataaaatctagtatcccaccttttgatatagttttgaatcaccattt 7715  T
Q  408 tagttacttaa 418  Q
    |||||||||||    
T  7714 tagttacttaa 7704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 7920 - 7827
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagtatcccaccattggacatt 102  Q
    ||||| || ||||||||| | |||||| |||||||||| | | ||||||||||||||||||||||| |||||||||| ||||||||||| ||||    
T  7920 attctgaaacacctaatgaaaatgaattgtcactaccctagcattgggtaataactcctaaaactcgatgttcagtaccccaccattgggcatt 7827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 34347 - 34422
Alignment:
Q  9 attctaaatcacctaatgcatatgaatcgtcactaccccaccgttgggtaataactcctaaaactcaatgttcagt 84  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||| ||| |||||    
T  34347 attctgaatcacctaatgcatatgaatcgccactacccgaccgttgggtagtaactcctaaaactcgatggtcagt 34422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 34455 - 34562
Alignment:
Q  308 aatgcatgaatgtctccataaataccccaccattggataataactcctcaact-ctaaagtctagtataccacctttggatataactttgaatcaccatt 406  Q
    ||||||||||||||||| ||||||||||||| |||||||||  ||||| ||   | |||||||||||| |||||||||||||||  ||||||||||||||    
T  34455 aatgcatgaatgtctccttaaataccccaccgttggataat--ctccttaaaaacaaaagtctagtatcccacctttggatatagttttgaatcaccatt 34552  T
Q  407 ttagttactt 416  Q
     |||||||||    
T  34553 atagttactt 34562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 103
Target Start/End: Original strand, 34285 - 34347
Alignment:
Q  42 taccccaccgttgggtaataactcctaaaact-caatgttcagtatcccaccattggacatta 103  Q
    ||||||||| |||| ||||||||||||||| | | |||||||||||||||||||||| |||||    
T  34285 taccccaccattggataataactcctaaaaattcgatgttcagtatcccaccattgggcatta 34347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 575 - 618
Target Start/End: Original strand, 34742 - 34785
Alignment:
Q  575 acatatacacgtatggaagcgcgtggagtgatacccttaccttt 618  Q
    ||||||||||||| |||| ||||||||||||| |||||||||||    
T  34742 acatatacacgtacggaaacgcgtggagtgatgcccttaccttt 34785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University