View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442R-Insertion-18 (Length: 1010)
Name: NF1442R-Insertion-18
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442R-Insertion-18 |
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Alignment Details
Target: chr2 (Bit Score: 825; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 9 - 955
Target Start/End: Original strand, 154663 - 155609
Alignment:
| Q |
9 |
accaaaccactacaatgatctcagctctctatttttcactaccaacgacgatgccatccgcagcctattcaatgatggctccgcctctgctaacaccgga |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154663 |
accaaaccactacaatgatctcagctctctatttttcactaccaacgacgatgccatccgcagcctattcaatgatggctccgcctctgctaacaccgga |
154762 |
T |
|
| Q |
109 |
tttcagctatcaagtctcataattttcttcgtggcgatatacttgcttggaattgtgacatacggtgttgccattccctctggactcttcattcccgtca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154763 |
tttcagctatcaagtctcataattttcttcgtggcgatatacttgcttggaattgtgacatacggtgttgccattccctctggactcttcattcccgtca |
154862 |
T |
|
| Q |
209 |
tgcttgctggagcttcttacgggcgtcttatagggactgtgacggctccattcacagctcttgatacgggtttgtttgctctccttggagccgcatcttt |
308 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154863 |
tacttgctggagcttcttacgggcgtcttatagggactgtgatggctccattcacagctcttgatacgggtttgtttgctctccttggagccgcatcttt |
154962 |
T |
|
| Q |
309 |
ccttggtggcacgatgagaatgacagtttctctatgtgtcatacttcttgaactcactaataacttgttgatgctaccattggtcatgttggttctcctc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
154963 |
ccttggtggcacgatgagaatgacagtttctctatgtgtcatacttcttgaactcactaataacttgttgatgctaccattggtcatgttggttctcctc |
155062 |
T |
|
| Q |
409 |
atttctaaggcagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccataca |
508 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
155063 |
atttctaagacagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggactaccttatatggaagcacatgcagagccataca |
155162 |
T |
|
| Q |
509 |
tgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgacaga |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
155163 |
tgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaaaagtggggaatatattgcacgctttgaaagtgacaga |
155262 |
T |
|
| Q |
609 |
acatcacggatttccagtagttgatgagcctcctttgacggatgctccggagttgtgtgggttggtgttgaggtctcatcttttggtgcttctcaagcac |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
155263 |
acatcacggatttccagtagttgatgagcctcctttgacggatgctcccgagttgtgtgggttggtgttgaggtctcatctttgggtgcttctcaagcac |
155362 |
T |
|
| Q |
709 |
aagacattgttcactagggagagggtgatgacagggtctactatagtgagcaaggttaaggcaagggattttgcaaaaccaggttttgggaagagggata |
808 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
155363 |
aagacattgttcactagggagagggtgatgacagggtctactattgtgaacaaggttaaggcaagggattttgcaaaaccagg-tttgggaagagggata |
155461 |
T |
|
| Q |
809 |
agggtggagggatttggacacttcacaagagaggatgg-aatgtatgttgatcttcat-caatcacaaatactttcttcatatactgttgttgaaac-at |
905 |
Q |
| |
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|||||||| ||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| || |
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| T |
155462 |
agggtgga-ggatttggacatttcacaagaggagatggaaatgtatgttgatcttcatccaatcacaaatac-ttctccatatactgttgttgaaacaat |
155559 |
T |
|
| Q |
906 |
gtctc-tgc-aaagctgcttctttctgtttcgggagcttggactcaagcatt |
955 |
Q |
| |
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||||| ||| ||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
155560 |
gtctcttgcaaaagctgct--cttctgtttcgggagcttggactcaggcatt |
155609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 128; Significance: 1e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 276 - 687
Target Start/End: Complemental strand, 56469624 - 56469213
Alignment:
| Q |
276 |
gggtttgtttgctctccttggagccgcatctttccttggtggcacgatgagaatgacagtttctctatgtgtcatacttcttgaactcactaataacttg |
375 |
Q |
| |
|
|||||||||||| || | || || ||||| |||||||||||||| ||||||||||| || ||| | |||||||| ||||| ||||| ||||| ||| | |
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| T |
56469624 |
gggtttgtttgcacttttgggtgctgcatccttccttggtggcacaatgagaatgactgtctctttgtgtgtcattcttctcgaacttactaacaacctc |
56469525 |
T |
|
| Q |
376 |
ttgatgctaccattggtcatgttggttctcctcatttctaaggcagtggctgattgttttaacaaaggtgtttatgatcagattgtggcgttgaagggac |
475 |
Q |
| |
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| |||||||||||||||||||| ||||||||||| || ||| | ||||| ||||||||||||||||||||||||||||| || |||| ||||||| |
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| T |
56469524 |
ctcatgctaccattggtcatgttagttctcctcatctcaaagtctgtggcagattgttttaacaaaggtgtttatgatcaaatagtggaaatgaaggggt |
56469425 |
T |
|
| Q |
476 |
taccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaaaagt |
575 |
Q |
| |
|
| |||||| |||||| |||||||| || ||||||||| |||||||||| || |||||||||||||||||||||||| | || | ||| || |||||||| |
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|
| T |
56469424 |
tgccttatttggaagtgcatgcagaaccgtacatgaggcatttagttgccggtgatgttgtttctggtccactgtttacattctctggtattgaaaaagt |
56469325 |
T |
|
| Q |
576 |
ggggaatatattgcacgctttgaaagtgacagaacatcacggatttccagtagttgatgagcctcctttgacggatgctccggagttgtgtgggttggtg |
675 |
Q |
| |
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||||||||| ||||| |||| || ||||| |||| | || ||||| || ||||||||||||| || || ||||| ||||| ||||||||||| |
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| T |
56469324 |
ggggaatattgtgcacactttaaaggtgacgcgacataatgggtttcctgtgattgatgagcctccattcttagaagctccagagttatgtgggttggtt |
56469225 |
T |
|
| Q |
676 |
ttgaggtctcat |
687 |
Q |
| |
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|||||||||||| |
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|
| T |
56469224 |
ttgaggtctcat |
56469213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 472 - 587
Target Start/End: Complemental strand, 24329234 - 24329119
Alignment:
| Q |
472 |
ggactaccttatatggaagcacatgcagagccatacatgaggaatttagttgcaggggatgttgtttctggtccactgttttctttttgtgggatcgaaa |
571 |
Q |
| |
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||||| |||||| ||||||||||||| || || |||||||||||| ||| | || | |||||||| || |||||| || | | |||| ||| ||||||| |
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| T |
24329234 |
ggacttccttatttggaagcacatgccgaaccttacatgaggaatatagctacacgtgatgttgtctcgggtccattgatgaccttttctggcatcgaaa |
24329135 |
T |
|
| Q |
572 |
aagtggggaatatatt |
587 |
Q |
| |
|
| || ||||||||||| |
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|
| T |
24329134 |
aggttgggaatatatt |
24329119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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