View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442R-Insertion-5 (Length: 320)
Name: NF1442R-Insertion-5
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442R-Insertion-5 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 320
Target Start/End: Complemental strand, 46104455 - 46104143
Alignment:
| Q |
8 |
acgtaccatacacaaaacatgaagaaactaactccctcctgtcttttcattcatctcaatttcattccctcagataactttccacatgatcatgtgcttt |
107 |
Q |
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| T |
46104455 |
acgtaccatacacaaaacatgaagaaactaactccctcttgtcttttccttcatctcaatttcattccctcaaataacttttcacatgatcatgtgcttt |
46104356 |
T |
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| Q |
108 |
tacattgaacccacttggcaaatgcttcaagtgttttgatatcagctctgtagtgcttctgagtaaactcaagcaacatagaccatgtgaaatcagggta |
207 |
Q |
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| T |
46104355 |
tacattgaacccacttggcaaatgcttcaagtgttttgatatcagctctgtagtgcttctgagtaaactcaagcaacatagaccatgtgaaatcagggta |
46104256 |
T |
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| Q |
208 |
gatccttgggttgtaattgtccaccaattcacatggtggagttaccactttatcacttaatggacacaaaaagaaagcaagagatttccttgtcttttcg |
307 |
Q |
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| T |
46104255 |
gatccttgggttgtaattgtccaccaattcacatggtggagttaccactttatcacttaatggacacaaaaagaaagcaagagatttccttgtcttttcg |
46104156 |
T |
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| Q |
308 |
ctgtttaccactg |
320 |
Q |
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| T |
46104155 |
ctgtttaccactg |
46104143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 134 - 300
Target Start/End: Original strand, 22552886 - 22553052
Alignment:
| Q |
134 |
tcaagtgttttgatatcagctctgtagtgcttctgagtaaactcaagcaacatagaccatgtgaaatcagggtagatccttgggttgtaattgtccacca |
233 |
Q |
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| T |
22552886 |
tcaagtgttctcatatcagctctataatatttttgagtgaactcaagaagcataggccatgtaaaatcaggatagattcttggtgtcaaatcactcacca |
22552985 |
T |
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| Q |
234 |
attcacatggtggagttaccactttatcacttaatggacacaaaaagaaagcaagagatttccttgt |
300 |
Q |
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| T |
22552986 |
attcacttggtggacaaaccaccttatcaccttttggacacaaaaagaaagctagagattttcttgt |
22553052 |
T |
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