View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442R-Insertion-6 (Length: 332)
Name: NF1442R-Insertion-6
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442R-Insertion-6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 31014698 - 31014376
Alignment:
| Q |
9 |
catctgaactgatgatgggcagaagacaaagtaaaatgcttacagggaacaataatcactgcaaaataacattgtcttatgtcaacaccttttcattttc |
108 |
Q |
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| T |
31014698 |
catctgaactgatgatgggcagaagacaaagtaaaatgcataccgggaacaataatcactgcaaaataacattgtcttatgtcaacaccttttcattttc |
31014599 |
T |
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| Q |
109 |
attttatgttcagaactattactgcagaaaatatacgcaaacttcaagtacgtccctgcacatcaaatgcctataacattgatataaacctcattgcaga |
208 |
Q |
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| T |
31014598 |
attttatgttcaaaactattactgcagaaaatatacgcaaacttcaagtacgtccctgcacatcaaatgcctataacattgatataaactacactgcaga |
31014499 |
T |
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| Q |
209 |
aactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaagataattcaagcacagaaatttg |
308 |
Q |
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| T |
31014498 |
aactatttcttaaata-catatagcacagtggatataatgttattttcttgaaggatatgtcatagtccctacaaaagataattcaagcacagaaatttg |
31014400 |
T |
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| Q |
309 |
accctcttttgctcttttgttgtg |
332 |
Q |
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| T |
31014399 |
accctcttttgctcttttgttgtg |
31014376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 332
Target Start/End: Complemental strand, 31192955 - 31192629
Alignment:
| Q |
9 |
catctgaactgatgatgggcagaagacaaagtaaaatgcttacagggaacaataatcactgcaaaataacattgtcttatgtcaacaccttttcattttc |
108 |
Q |
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||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31192955 |
catctgaactgatgatgggcagaagacaaagtaaaattcataccgggaacaataatcactgcaaaataacattgtcttttgtcaacaccttttcattttc |
31192856 |
T |
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| Q |
109 |
attttatgttcagaactattactgcagaaaatatacgcaaacttcaagtacg---tccctgcacatcaaatgcctataacattgatataaacctcattgc |
205 |
Q |
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| T |
31192855 |
atgttgtgttcaaaactattgctgcagaaaatttacgcaaacttcaagtgcggcgtccctgcacatcaaatgcctataacattgatataaacctcattgc |
31192756 |
T |
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| Q |
206 |
agaaactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaagataattcaagcacagaaat |
305 |
Q |
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| T |
31192755 |
agaaactatttcttaaaaaccatatagcacagtggatataatgttattttctggaaggatattgcatagtccctacaaaagataattcaagcacagaaat |
31192656 |
T |
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| Q |
306 |
ttgaccctcttttgctcttttgttgtg |
332 |
Q |
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| T |
31192655 |
ttgaccctcttttgctcttttgttgtg |
31192629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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