View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442R-Insertion-7 (Length: 460)

Name: NF1442R-Insertion-7
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442R-Insertion-7
NF1442R-Insertion-7
[»] chr7 (1 HSPs)
chr7 (241-399)||(47363495-47363657)
[»] chr1 (2 HSPs)
chr1 (287-364)||(34711561-34711638)
chr1 (197-278)||(4816742-4816823)
[»] chr5 (1 HSPs)
chr5 (197-250)||(41732461-41732514)
[»] chr3 (5 HSPs)
chr3 (356-393)||(1930009-1930046)
chr3 (197-278)||(25500985-25501066)
chr3 (285-430)||(33508447-33508590)
chr3 (327-399)||(8690337-8690409)
chr3 (327-399)||(9042206-9042278)
[»] chr6 (1 HSPs)
chr6 (356-393)||(1069058-1069095)
[»] chr2 (1 HSPs)
chr2 (356-393)||(29370290-29370327)
[»] chr8 (1 HSPs)
chr8 (195-239)||(22642806-22642850)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 241 - 399
Target Start/End: Complemental strand, 47363657 - 47363495
Alignment:
Q  241 attttgacactcttgctaggtta----tgggcgacacaatttctttataagtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaa 336  Q
    |||||||||||||||||||| ||    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  47363657 attttgacactcttgctaggctagctatgggcgacacaatttctttataagtttgaaaaatgacacaaaaatgatctacaacgagacataatattatcaa 47363558  T
Q  337 attccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 399  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||    
T  47363557 attccaactgattattcggcctatcaactatgctatcagccactagcttagaatctagctcaa 47363495  T

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Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 34711561 - 34711638
Alignment:
Q  287 gtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaac 364  Q
    |||||||| ||||||||| | ||||||||| |||||||||||||||| ||||||| |||||||||||| |||||||||    
T  34711561 gtttggaacatgacacaatagtgatctacatcgagacataatattactaaattccgactgattattggacctatcaac 34711638  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 4816823 - 4816742
Alignment:
Q  197 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacgattttgacactcttgctaggttatgggcgacacaattt 278  Q
    |||| ||||||||||||||||||||||||| ||| |||||||| |||||||| | ||||||| | ||||||||||| |||||    
T  4816823 aatataagatgaaatcaaatcaaagacttggtgacgagcatacaattttgactcccttgctaagctatgggcgacataattt 4816742  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 41732514 - 41732461
Alignment:
Q  197 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacgattttgacac 250  Q
    |||||||||||||||||||||||| ||||||||| |||||| | || |||||||    
T  41732514 aatacaagatgaaatcaaatcaaaaacttgatgacgagcatgcaatcttgacac 41732461  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 1930046 - 1930009
Alignment:
Q  356 cctatcaactatgctatcagccactagcttacaatcta 393  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  1930046 cctatcaactatgctatcaaccactagcttacaatcta 1930009  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 197 - 278
Target Start/End: Complemental strand, 25501066 - 25500985
Alignment:
Q  197 aatacaagatgaaatcaaatcaaagacttgatgatgagcatacgattttgacactcttgctaggttatgggcgacacaattt 278  Q
    ||||||||||| |||||||| ||||||| | ||| |||||||| |||||||  | |||||||   |||||||||||||||||    
T  25501066 aatacaagatggaatcaaatgaaagactcggtgacgagcatacaattttgatgcccttgctaaactatgggcgacacaattt 25500985  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 430
Target Start/End: Complemental strand, 33508590 - 33508447
Alignment:
Q  285 aagtttggaaaatgacacaaaaatgatctacaacgagacataatattaccaaattccaactgattattgggcctatcaactatgctatcagccactagct 384  Q
    |||||| ||||||||||||| | ||||||||| | | ||||||||||| ||||||   || ||||||||| |||||||| |||| || |  | |||| ||    
T  33508590 aagtttagaaaatgacacaatagtgatctacaccaa-acataatattatcaaattttgaccgattattggacctatcaaatatgatacccactactaact 33508492  T
Q  385 tacaatctaactcaatttagcaccttcgataatctcaattgatcaa 430  Q
    ||||||| | |||||||| ||||||| |||| |  |||||||||||    
T  33508491 tacaatcaagctcaattt-gcacctttgatagttccaattgatcaa 33508447  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 8690409 - 8690337
Alignment:
Q  327 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 399  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  8690409 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 8690337  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 399
Target Start/End: Complemental strand, 9042278 - 9042206
Alignment:
Q  327 atattaccaaattccaactgattattgggcctatcaactatgctatcagccactagcttacaatctaactcaa 399  Q
    ||||||||||| ||   |||| |||| | ||||||||||||||||||| | |||||||||||||||| |||||    
T  9042278 atattaccaaactcagcctgaatattagtcctatcaactatgctatcaactactagcttacaatctagctcaa 9042206  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Original strand, 1069058 - 1069095
Alignment:
Q  356 cctatcaactatgctatcagccactagcttacaatcta 393  Q
    ||||| ||||||||||||| ||||||||||||||||||    
T  1069058 cctatgaactatgctatcatccactagcttacaatcta 1069095  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 29370327 - 29370290
Alignment:
Q  356 cctatcaactatgctatcagccactagcttacaatcta 393  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  29370327 cctatcaattatgctatcaaccactagcttacaatcta 29370290  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 22642806 - 22642850
Alignment:
Q  195 taaatacaagatgaaatcaaatcaaagacttgatgatgagcatac 239  Q
    |||||||||||||||||||||||||| ||||| |||  |||||||    
T  22642806 taaatacaagatgaaatcaaatcaaatacttggtgactagcatac 22642850  T

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