View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442R-Insertion-8 (Length: 563)
Name: NF1442R-Insertion-8
Description: NF1442R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442R-Insertion-8 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 9 - 563
Target Start/End: Original strand, 31548125 - 31548669
Alignment:
| Q |
9 |
atcattgtataggttttccctgatcctgtttgaccataggcaaagatgcaaacctaaaatgaaaa-catcgtatttcagaataaattccaatggttaatg |
107 |
Q |
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| T |
31548125 |
atcattgtataggttttccctgatcctgtttgaccataggcaaagatgcaaacctaaaatgaaaaacttcatatttcagaataaatccaaatggttaatg |
31548224 |
T |
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| Q |
108 |
tgtatgtatgcatattgatttaaaaacatacatatttgaattgcagcataactgacatgtgccttatatgtagcattgatagatcagaaccaaagaaatc |
207 |
Q |
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| T |
31548225 |
tgtatgtatccatattgattta----catgcatatttgaatagcagcataactgagacgtgccttatatgtagcattgatagatcagaaccaaagaaatc |
31548320 |
T |
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| Q |
208 |
caaggaaaaatgtgaaaaatgctatacaacacttacaacagaagaacttttacttaccttataaccatcaagagcactttgtacaagctgtgaaacttct |
307 |
Q |
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| T |
31548321 |
caaggaaaaatgtgaaaaatgatatacaaagcttacagcagaagagctttgaattaccttataaccatcaagagcactttgcacaagctgtgaaacttct |
31548420 |
T |
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| Q |
308 |
acaaaaacttcttcttgtgatacgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaataggagtcacatgagttgcca |
407 |
Q |
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| T |
31548421 |
acaaacacttcttcttgtgatatgtcttgtataaaaactttatcaaatttaaaagaatgcttctggcctaaaaacaaaataggagtcacacgagttgcca |
31548520 |
T |
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| Q |
408 |
atttaataagatcataactaaaacaatcatagaaaaataagaaaaattatactttcaagtttcaaatacatcatcataacagatataccattttgggcta |
507 |
Q |
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| T |
31548521 |
atttaataagatcataactaaaacaatcatagaaaaataagaaaaattatac-------tttcaaatacatcatcacaacagatataccattttgggcta |
31548613 |
T |
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| Q |
508 |
ggtcaattcctcgtccagaactttccattgataatggataactgaatatcttgcct |
563 |
Q |
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| T |
31548614 |
ggtcaattcctcgtccagaagtttccattgatgatggataactgaatatcttgcct |
31548669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 381
Target Start/End: Complemental strand, 34650793 - 34650673
Alignment:
| Q |
261 |
ttaccttataaccatcaagagcactttgtacaagctgtgaaacttctacaaaaacttcttcttgtgatacgtcttgtataaaaactttatcaaatttaaa |
360 |
Q |
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| T |
34650793 |
ttaccttataaccatcaagagcactttgcacaagttgtgaaatttccgtaaatacttcttcttgtaatgcatcaggtgcaaaaactctatcaaatgtgaa |
34650694 |
T |
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| Q |
361 |
agaatgcttctggcctaaaaa |
381 |
Q |
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| T |
34650693 |
agaatgtttttgacctaaaaa |
34650673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 9 - 63
Target Start/End: Complemental strand, 34651173 - 34651119
Alignment:
| Q |
9 |
atcattgtataggttttccctgatcctgtttgaccataggcaaagatgcaaacct |
63 |
Q |
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| T |
34651173 |
atcattgtataggttttccctgaacctgtctgaccatatgcgaaaatgcaaacct |
34651119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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