View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_high_11 (Length: 249)
Name: NF1442_high_11
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35608357 - 35608118
Alignment:
| Q |
1 |
ttatctataaacccttgttgcgttggatctggttttagatctttctaagagtaagatagatagatc-attttttatgaatatgcagcaaagactagggtt |
99 |
Q |
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| T |
35608357 |
ttatctataaacccttgttgctttggatctggttttagatctttctaagagtaagatagatagatctattttttatgaatatgcagcaaagactagggtt |
35608258 |
T |
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| Q |
100 |
tattagctagnnnnnnncgaaagacgcgactattcttatnnnnnnngggacagtgttaataactattaaacaaacatataatatatgtaggttatactat |
199 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35608257 |
tattagctagaaaaaaacgaaagacgcgactattcttataaaaaaagggacagtgttaataactattaaacaaacatataatatatgtaggttatacgat |
35608158 |
T |
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| Q |
200 |
atgatgcagattgaagagaaagagagattaaatgtctgtg |
239 |
Q |
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||||||||||||| |||||||||||||||||||||||||| |
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| T |
35608157 |
atgatgcagattgcagagaaagagagattaaatgtctgtg |
35608118 |
T |
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