View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_high_13 (Length: 239)
Name: NF1442_high_13
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_high_13 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 26570923 - 26570708
Alignment:
| Q |
24 |
gactgaacctttcttgcgcgccacttcgttctcgattcatgctgctagccagcttgtctacatcacattacctctagcc-atactcatcattcattattg |
122 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26570923 |
gactgaacctttcttgcgcgc-acttcgtcctcgattcatgctgctagctagcttgtctacatcacattacctctagcccatactcatcattcattattg |
26570825 |
T |
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| Q |
123 |
ttctcatttcactccaatggaattgaattctcacattaattaactatattattcttttggttatgcaccagcaatcataagttcaaggaaagtggttcaa |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26570824 |
ttctcatttcactccaatggaattgaattctcacattaattaactatattattcttttggttatgcaccagcaatcataagttcaaggaaagtggttcaa |
26570725 |
T |
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| Q |
223 |
gcttataaatatcattt |
239 |
Q |
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||||||||||||||||| |
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| T |
26570724 |
gcttataaatatcattt |
26570708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 1954132 - 1954079
Alignment:
| Q |
19 |
gttccgactgaacctttcttgcgcgccacttcgttctcgattcatgctgctagc |
72 |
Q |
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| T |
1954132 |
gttccgattcaacctttcttgcgcgccacttcttcctcgattcgtgctgctagc |
1954079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 2940139 - 2940182
Alignment:
| Q |
27 |
tgaacctttcttgcgcgccacttcgttctcgattcatgctgcta |
70 |
Q |
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| T |
2940139 |
tgaacctttcttgcgcgccacttcgtctttgattcatgctgcta |
2940182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 13394625 - 13394673
Alignment:
| Q |
24 |
gactgaacctttcttgcgcgccacttcgttctcgattcatgctgctagc |
72 |
Q |
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|||||||||||||||||| ||||| |||| ||||||| |||||||||| |
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| T |
13394625 |
gactgaacctttcttgcgtgccacatcgtcttcgattcgtgctgctagc |
13394673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 12486668 - 12486721
Alignment:
| Q |
19 |
gttccgactgaacctttcttgcgcgccacttcgttctcgattcatgctgctagc |
72 |
Q |
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||||||||| |||||||||||||||||||||| | || ||||| |||||||||| |
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| T |
12486668 |
gttccgactaaacctttcttgcgcgccacttcttccttgattcgtgctgctagc |
12486721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 4361160 - 4361208
Alignment:
| Q |
20 |
ttccgactgaacctttcttgcgcgccacttcgttctcgattcatgctgc |
68 |
Q |
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| T |
4361160 |
ttccgactgaatctttcttgcgcgccacttcgtcttcgattcgtgctgc |
4361208 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Original strand, 19684969 - 19685002
Alignment:
| Q |
19 |
gttccgactgaacctttcttgcgcgccacttcgt |
52 |
Q |
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| T |
19684969 |
gttccgactgaacctttcttgtgcgccacttcgt |
19685002 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 20398847 - 20398884
Alignment:
| Q |
24 |
gactgaacctttcttgcgcgccacttcgttctcgattc |
61 |
Q |
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| T |
20398847 |
gactgaacctttcttgcgcgccacttcgtcttcgattc |
20398884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 8781163 - 8781130
Alignment:
| Q |
19 |
gttccgactgaacctttcttgcgcgccacttcgt |
52 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
8781163 |
gttctgactgaacctttcttgcgcgccacttcgt |
8781130 |
T |
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