View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_high_5 (Length: 378)
Name: NF1442_high_5
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 40295298 - 40294946
Alignment:
| Q |
17 |
agaaaatcacgacatttgggatatacgagtga-gtcctatacctaaaggatttagatattgtaaaacttgccaattcagtgattgaactttcaaaattag |
115 |
Q |
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| T |
40295298 |
agaaaatcacgacatttgggatatacgagtgaagtcctatacctaaaggatttagatattgtgaaacttgccaattcagtgattgaactttcaaaattag |
40295199 |
T |
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| Q |
116 |
nnnnnnnnn-----ccttcacatatttggaatttatagtttcttcctatatatcatcataacatatgaatgaagatattagcaacnnnnnnnn---gtag |
207 |
Q |
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| T |
40295198 |
ttttttttttttttccttcacatatttggaatttatagtttcttcctgtatatcatcataacatatgaatgaagatattagcaacaaaaaaaaaaagtag |
40295099 |
T |
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| Q |
208 |
ggttttctagtagtgttactaagagtgtttttggatggattaattggaaattttgggaaaattagaattcatggcaattcaaatacttccatggaactcc |
307 |
Q |
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| T |
40295098 |
ggttttctagtagtgttactaagagtgttt--ggatgaattagttggaaattttgggaaaattagaattcatggcaattcaaatacttccatggaactcc |
40295001 |
T |
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| Q |
308 |
cttcatttttacattttgttgtttggatagagtaataaaattcttcattcttata |
362 |
Q |
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| T |
40295000 |
cttcatatttacattttgttgtttggatagagtaataaaattcttcattcttata |
40294946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 280 - 347
Target Start/End: Complemental strand, 45867255 - 45867188
Alignment:
| Q |
280 |
ggcaattcaaatacttccatggaactcccttcatttttacattttgttgtttggatagagtaataaaa |
347 |
Q |
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| T |
45867255 |
ggcaattcaaataattcaattgaatttccttcatttttaaatgtttttgtttggataaagtaataaaa |
45867188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 326 - 360
Target Start/End: Complemental strand, 47257090 - 47257056
Alignment:
| Q |
326 |
ttgtttggatagagtaataaaattcttcattctta |
360 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
47257090 |
ttgtttagatagagtaataaaattcttcattctta |
47257056 |
T |
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