View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442_high_6 (Length: 355)

Name: NF1442_high_6
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442_high_6
NF1442_high_6
[»] chr7 (8 HSPs)
chr7 (14-316)||(23839812-23840113)
chr7 (21-316)||(23843536-23843831)
chr7 (14-239)||(23860747-23860972)
chr7 (21-238)||(23864294-23864511)
chr7 (14-240)||(23856704-23856930)
chr7 (33-113)||(23853287-23853367)
chr7 (33-113)||(23850896-23850976)
chr7 (33-113)||(23855810-23855890)


Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 23840113 - 23839812
Alignment:
Q  14 gaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23840113 gaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct 23840014  T
Q  114 gttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaat 213  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  23840013 gttttcgtagcat-ctggatccctctagttcaagacataatagggttgcaattgttcacagctgaaaagtttccaaagctttacaattggagtcaagaat 23839915  T
Q  214 ttcttgaccatcctgttgtgaaggaaactcttactccacgagaacctcttttcgccttttttaaaggtcgttatgaaagacttcttgccgcttcaaagta 313  Q
    ||||||||||||||||||||||||||||| || ||||| |||| |||||||||||||||||||||||||| ||||| || |||||||| |||||||| ||    
T  23839914 ttcttgaccatcctgttgtgaaggaaactattcctccaagagagcctcttttcgccttttttaaaggtcgctatgagagccttcttgctgcttcaaaata 23839815  T
Q  314 gat 316  Q
    |||    
T  23839814 gat 23839812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 316
Target Start/End: Complemental strand, 23843831 - 23843536
Alignment:
Q  21 gaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgctgttttgg 120  Q
    |||||| |||| ||||||||||| |||||| |||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||||||||||| |    
T  23843831 gaagaagcaaccgaggctcttcactttcttgagaatgagctgaaggacaagtactttggaggagaagagtttaactttgtcgatattgctgctgttttcg 23843732  T
Q  121 tagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaatttcttga 220  Q
    ||||||| ||| |||||||||||||||||||||  | | ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  23843731 tagcattttgggtccctctagttcaagacataaccgagctgcaattgttcacagctgaaaagttcccaaagctttacaattggagtcaagaatttcttga 23843632  T
Q  221 ccatcctgttgtgaaggaaactcttactccacgagaacctcttttcgccttttttaaaggtcgttatgaaagacttcttgccgcttcaaagtagat 316  Q
    ||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||| || |||||||| |||||||| |||||    
T  23843631 ccatcctgttgtgaaggaaactcttcctcctagagagcctcttttcgccttttttaaaggtcgttatgagagccttcttgcggcttcaaaatagat 23843536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 23860972 - 23860747
Alignment:
Q  14 gaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct 113  Q
    |||||| |||||| |||| |||||||| ||| ||||| ||||||||||||||   ||||||||||| ||||||||| |||||||||||||||||||||||    
T  23860972 gaatgttgaagaatcaaccgaggctctgcagattcttgagaatgagctgaagaacaagtactttgggggagaagagattaactttgtggatattgctgct 23860873  T
Q  114 gttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaat 213  Q
    || ||  |||| || ||||||||| |  |||||||||||   |  ||| ||||||||| ||||||||||| ||||||||||||||| ||||| |||||||    
T  23860872 gtgttcatagctttttggatccctttgattcaagacatagctgaattgaaattgttcaatgctgaaaagtatccaaagctttacaaatggagccaagaat 23860773  T
Q  214 ttcttgaccatcctgttgtgaaggaa 239  Q
    ||||  ||||||||| ||||||||||    
T  23860772 ttctcaaccatcctgctgtgaaggaa 23860747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 23864511 - 23864294
Alignment:
Q  21 gaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgctgttttgg 120  Q
    |||||| ||||||  ||||| ||| ||||  |||||||||||||||  |||| |||||| ||||| ||| ||   |||||||||||| ||||||| ||      
T  23864511 gaagaatcaactggagctctgcagattctcgagaatgagctgaaggacaagttctttgggggagaggagattggttttgtggatatttctgctgtgttca 23864412  T
Q  121 tagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaatttcttga 220  Q
    |||| || ||||||||| |  |||||||| ||||||||||| ||| ||||||||||||||||| ||||||||||||||| ||||| |||||||||||  |    
T  23864411 tagctttttggatccctttgtttcaagacttaatagggttgaaatggttcactgctgaaaagtatccaaagctttacaaatggagccaagaatttctcaa 23864312  T
Q  221 ccatcctgttgtgaagga 238  Q
    ||||||  ||||||||||    
T  23864311 ccatccaattgtgaagga 23864294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 240
Target Start/End: Complemental strand, 23856930 - 23856704
Alignment:
Q  14 gaatgtcgaagaaacaactgaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct 113  Q
    |||||| |||| ||||| ||||||||| ||| ||||| |||||||| ||||||  |||| ||||||||| || ||| ||    ||||||||||||| |||    
T  23856930 gaatgttgaaggaacaattgaggctctacagattcttgagaatgagttgaaggacaagttctttggaggtgaggagattggaattgtggatattgcagct 23856831  T
Q  114 gttttggtagcattctggatccctctagttcaagacataatagggttgcaattgttcactgctgaaaagtttccaaagctttacaattggagtcaagaat 213  Q
    || |   |||| || ||||||||| |  ||||||| |||| ||||||||||||||| | ||||||||||| ||| || ||||  || ||||| |||||||    
T  23856830 gtgtacatagctttttggatccctttgattcaagaaataacagggttgcaattgttgaatgctgaaaagtgtcccaaactttcgaagtggagccaagaat 23856731  T
Q  214 ttcttgaccatcctgttgtgaaggaaa 240  Q
    ||||  |||||||  |||| |||||||    
T  23856730 ttctcaaccatccaattgttaaggaaa 23856704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 23853287 - 23853367
Alignment:
Q  33 gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct 113  Q
    |||||||| ||||||||| |||||||||||||||  |||| |||||||||||| ||| ||| |||||||||||||||||||    
T  23853287 gaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaggagattagctttgtggatattgctgct 23853367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 23850896 - 23850976
Alignment:
Q  33 gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct 113  Q
    |||||||| ||||||||| |||||||||||||||  |||| |||||||||||||||  |   |||||||||||||||||||    
T  23850896 gaggctctgcagtttcttgagaatgagctgaaggacaagttctttggaggagaagaaataggctttgtggatattgctgct 23850976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 23855810 - 23855890
Alignment:
Q  33 gaggctcttcagtttcttcagaatgagctgaagggtaagtactttggaggagaagagtttaactttgtggatattgctgct 113  Q
    |||||||| ||||||||| ||||| ||||||| |  |||| |||||||||||||||| ||   ||||||||||||||||||    
T  23855810 gaggctctgcagtttcttgagaataagctgaatgacaagttctttggaggagaagagattggttttgtggatattgctgct 23855890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University