View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_low_10 (Length: 323)
Name: NF1442_low_10
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 6128674 - 6128377
Alignment:
| Q |
10 |
caatgagtcaatcaagtttagttgttgggaaacatcattcttgcaagatagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatg |
109 |
Q |
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| T |
6128674 |
caatgagtcaatcaagtttagttgttgggaaacatcattcttgcaagatagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatg |
6128575 |
T |
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| Q |
110 |
ttgtcattaatgattccctgcaattaat----agtagtcatataatgaaacatttatagagcatttaaatttctagcaagaaaagagtatttgcacttgt |
205 |
Q |
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| T |
6128574 |
ttgtcattaatgattccctgcaattaattaatagtagtcatataatgaaacatttatagagcatttaaatttctagcaagaaaagagtatttgcacttgt |
6128475 |
T |
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| Q |
206 |
tcattgatttgctttgattaatttgacactttgtgggctttgtaagaaatgcaaaataggtgttaaagggggttaattaaaggagatttgctttcatgtt |
305 |
Q |
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| T |
6128474 |
tcattgatttgctttgattaatttgacactttgtgggctctgtaagaaatgcaaaataggtgttaaaggggg----ttaaaggagatttgctttcatgtt |
6128379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 138
Target Start/End: Original strand, 34487974 - 34488052
Alignment:
| Q |
57 |
atagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatgttgtcattaatgattccctgcaattaata |
138 |
Q |
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| T |
34487974 |
atagaaacatcttcttcacttcatctttttccatttctacttgttgcttcatattgccat---tgatttcctgcaattaata |
34488052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 145
Target Start/End: Original strand, 34451134 - 34451266
Alignment:
| Q |
10 |
caatgagtcaatcaagtttagttgttgggaaacatcatt-cttgcaagatagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcat |
108 |
Q |
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| T |
34451134 |
caatgagtcaatgaagtttaacttttgtgaaatatcattgcttg-aagattgaaaaatcttcctcacttcctccttttgcatttgcacttgtgtcttcat |
34451232 |
T |
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| Q |
109 |
gttgtcattaatgattccctgcaattaatagtagtca |
145 |
Q |
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| T |
34451233 |
attgtcat---tgatttcctgcatttaataatagtca |
34451266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 34461950 - 34462012
Alignment:
| Q |
54 |
aagatagaaaaatcttctttacttcttcttttggcatttgtacttgttgcttcatgttgtcat |
116 |
Q |
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| T |
34461950 |
aagatagtaaaagtttcttcacttcctctttttgcatttgtacttgttgcatcatattgtcat |
34462012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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