View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_low_12 (Length: 274)
Name: NF1442_low_12
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 53096079 - 53095827
Alignment:
| Q |
1 |
tgttccctcttcctcatgatctgctgattatatttcatcttctgtagaatttcaacttcttgtcctactccttgtcggctggaggtaacgggttaaaggt |
100 |
Q |
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| T |
53096079 |
tgttccctcttcctcatgatctgatgattatatttcatattctgtagaatttcaacttcttgtccttgtccttgtcggctggaggtaacgggttaaaggt |
53095980 |
T |
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| Q |
101 |
tgaagactgtttttccaaaggtggaagtaggaggttagaacagttcgcaaaatgtcaagtgccttattttcggtctatacagcagcagcatgggctcatg |
200 |
Q |
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||||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
53095979 |
tgaagactgttttaccaaaggtggaattaggaggttagaacagttctcaaaatctcaagtgccttattttcggtctatacaacagcagcatgggctcatg |
53095880 |
T |
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| Q |
201 |
ccaataccaacaactccaccaaatcagtatacctcaacttcttacattgatca |
253 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53095879 |
ccaataccaacaactccaccaaatcagtatacctcaacttcttacattgatca |
53095827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 26143362 - 26143302
Alignment:
| Q |
1 |
tgttccctcttcctcatgatctgctgattatatttcatcttctgtagaatttcaacttctt |
61 |
Q |
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|||| ||||||||||||| |||| |||||||||||||| ||||| | | ||||||||||| |
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| T |
26143362 |
tgttacctcttcctcatgctctgatgattatatttcatattctgcaaagcttcaacttctt |
26143302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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