View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_low_14 (Length: 250)
Name: NF1442_low_14
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_low_14 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 35608606 - 35608373
Alignment:
| Q |
17 |
cactgcatagggctaatgagagtggtggacggtggtttctgagatactgacagaatgtgttccagtctcttctcttttggttttcataacggcttgaagt |
116 |
Q |
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| T |
35608606 |
cactgcatagggctaatgagagtggtggacggtggtttctgagatactgacagaatgtgttccagtctcttctcttttggttttcataacggcttgaagt |
35608507 |
T |
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| Q |
117 |
tggagttgatgttgaacttccacttccagtgctattgttggtcattgaagatccacttgttggactctctacactttggtttgttgatcctgatgaaacc |
216 |
Q |
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| T |
35608506 |
tggagttgatgttgaacttccacttccagtgctattgttggtcattgaagatccacttgttggactctctacactctggtttgttgatcctgatgaaacc |
35608407 |
T |
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| Q |
217 |
aaatccatggtgaagaaagatttttctgttctct |
250 |
Q |
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| T |
35608406 |
aaatccatggtgaagaaatatttttctgttctct |
35608373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Complemental strand, 9914938 - 9914852
Alignment:
| Q |
160 |
attgaagatccacttgttggactctctacactttggtttgttgatcctgatgaaaccaaatccatggtgaagaaagatttttctgtt |
246 |
Q |
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| T |
9914938 |
attgaaaacccacttgttgggttctctactctctggtttgttgatcttgatgaaaccaaatccatggagaaaaaagatttttctgtt |
9914852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 160 - 246
Target Start/End: Original strand, 27542876 - 27542962
Alignment:
| Q |
160 |
attgaagatccacttgttggactctctacactttggtttgttgatcctgatgaaaccaaatccatggtgaagaaagatttttctgtt |
246 |
Q |
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| T |
27542876 |
attgaaaacccacttgttgggttctctactctctggtttgttgatcttgatgaaaccaaatccatggagaaaaaagatttttctgtt |
27542962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 47836558 - 47836511
Alignment:
| Q |
49 |
tggtttctgagatactgacagaatgtgttccagtctcttctcttttgg |
96 |
Q |
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| T |
47836558 |
tggtttcttaaatactggcagaatgtgttccagtctctcctcttttgg |
47836511 |
T |
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