View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_low_2 (Length: 471)
Name: NF1442_low_2
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 19 - 458
Target Start/End: Complemental strand, 53096694 - 53096255
Alignment:
| Q |
19 |
ttctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaac |
118 |
Q |
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| T |
53096694 |
ttctgctgccgctaaagctccacattggctgaatgctgctatttgcaactccaaacacgatttgatggaaagttgttcttcaggtggaaaggtaagaaac |
53096595 |
T |
|
| Q |
119 |
taaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgcactccactcaaatgcctattagttgtttccaataata |
218 |
Q |
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| T |
53096594 |
taaaaattcatgcttagtattgttgttttgcatgattaagaagtttttcatcatagttgatgctctccactcaaatgcctattagttgtttccaataata |
53096495 |
T |
|
| Q |
219 |
aatgtttaatgacaatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagttt |
318 |
Q |
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| T |
53096494 |
aatgtttaatgacgatgcagatttccgaacctgttgttcataaaaagtcatggaagagttgtgcagctcatgttcacattagtcagctcatccggagttt |
53096395 |
T |
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| Q |
319 |
agaagttccnnnnnnncatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagca |
418 |
Q |
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| T |
53096394 |
agaagttccaaaaaaacatggtgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagca |
53096295 |
T |
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| Q |
419 |
caaaactcaaatgggactagaaatggaaatagttttgatg |
458 |
Q |
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| T |
53096294 |
caaaactcaaatgggacgagaaatggaaatagttttgatg |
53096255 |
T |
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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 340 - 458
Target Start/End: Original strand, 1369335 - 1369452
Alignment:
| Q |
340 |
tgccaaagaacccgagcgttatgaatgtcaccaacccagagtacaccaaggatcaaagtgtggagttctaatcaaagcacaaaactcaaatgggactaga |
439 |
Q |
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|||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||| ||| | | |||||||||||||||||||| ||||||| ||| |
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| T |
1369335 |
tgccaaagaatctgagcgttatgaatgtcaccaaaccagagttcaccaaagatcaaaatgtata-tcctaatcaaagcacaaaactctaatgggatgaga |
1369433 |
T |
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| Q |
440 |
aatggaaatagttttgatg |
458 |
Q |
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| T |
1369434 |
aatggaaatagttttgatg |
1369452 |
T |
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