View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442_low_3 (Length: 428)

Name: NF1442_low_3
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442_low_3
NF1442_low_3
[»] chr1 (6 HSPs)
chr1 (233-340)||(12532393-12532500)
chr1 (233-315)||(36612086-36612168)
chr1 (233-315)||(40150653-40150735)
chr1 (86-170)||(12533386-12533469)
chr1 (367-410)||(12532318-12532361)
chr1 (102-155)||(12535904-12535957)
[»] chr5 (1 HSPs)
chr5 (233-336)||(6842770-6842873)
[»] chr7 (5 HSPs)
chr7 (233-314)||(37495562-37495643)
chr7 (233-318)||(19023447-19023532)
chr7 (233-318)||(20731104-20731189)
chr7 (233-315)||(10055273-10055355)
chr7 (233-310)||(46997176-46997253)
[»] chr3 (4 HSPs)
chr3 (233-315)||(38445067-38445149)
chr3 (233-316)||(45445310-45445393)
chr3 (233-315)||(55091872-55091954)
chr3 (233-310)||(26596239-26596316)
[»] chr4 (1 HSPs)
chr4 (233-315)||(15624729-15624811)
[»] chr2 (1 HSPs)
chr2 (233-310)||(43655148-43655225)


Alignment Details
Target: chr1 (Bit Score: 100; Significance: 3e-49; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 233 - 340
Target Start/End: Complemental strand, 12532500 - 12532393
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgactgatgatgtttgttttaa 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  12532500 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgactgatgaattttgttttaa 12532401  T
Q  333 gttgatta 340  Q
    ||||||||    
T  12532400 gttgatta 12532393  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 36612086 - 36612168
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgact 315  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  36612086 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatatcgact 36612168  T

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Target: chr1; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 40150653 - 40150735
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgact 315  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40150653 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatatcgact 40150735  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 12533469 - 12533386
Alignment:
Q  86 gctcaacgatgggagaaatccaaaacctataacaatgttttcccaaacattgatacctggaaaatcctcaccagtttgtcattgt 170  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||||||    
T  12533469 gctcaacgatgggagaaatccaaaacctataacaatatttccccaaacattgatacttggaaaatcctcaccag-ttgtcattgt 12533386  T

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Target: chr1; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 367 - 410
Target Start/End: Complemental strand, 12532361 - 12532318
Alignment:
Q  367 attgctcattgcagtcaacttttctcttgatttatttctttttt 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  12532361 attgctcattgcagtcaacttttctcttgatttatttctttttt 12532318  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 102 - 155
Target Start/End: Complemental strand, 12535957 - 12535904
Alignment:
Q  102 aatccaaaacctataacaatgttttcccaaacattgatacctggaaaatcctca 155  Q
    ||||| ||||| |||| ||||||||||||||| ||||||| |||||||||||||    
T  12535957 aatcccaaacccataataatgttttcccaaacgttgatacttggaaaatcctca 12535904  T

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Target: chr5 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 233 - 336
Target Start/End: Original strand, 6842770 - 6842873
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgactgatgatgtttgttttaa 332  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  6842770 cgtcaacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatattgactgatgatctttgctttaa 6842869  T
Q  333 gttg 336  Q
    ||||    
T  6842870 gttg 6842873  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 233 - 314
Target Start/End: Original strand, 37495562 - 37495643
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgac 314  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37495562 cgtcaacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatattgac 37495643  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 233 - 318
Target Start/End: Original strand, 19023447 - 19023532
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgactgat 318  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19023447 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatatcgactgat 19023532  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 233 - 318
Target Start/End: Complemental strand, 20731189 - 20731104
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgactgat 318  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  20731189 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatatcgactgat 20731104  T

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Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 10055273 - 10055355
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgact 315  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10055273 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatatcgact 10055355  T

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Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 46997253 - 46997176
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatat 310  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  46997253 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatat 46997176  T

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Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 38445067 - 38445149
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgact 315  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38445067 cgtcgacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatatcgact 38445149  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 233 - 316
Target Start/End: Original strand, 45445310 - 45445393
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgactg 316  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45445310 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatatcgactg 45445393  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 55091872 - 55091954
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgact 315  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  55091872 cgtcgacagcagggttcgaacctgcgcgggcgaagcccaacagatttcaagtctgtctccttaaccactcggacatatcgact 55091954  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 310
Target Start/End: Original strand, 26596239 - 26596316
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatat 310  Q
    |||| |||||||| ||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  26596239 cgtcgacagcaggattcgaacctgcgcaggcaaagcccaacagatttcgagtctgtctccttaaccactcggacatat 26596316  T

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Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 15624729 - 15624811
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatattgact 315  Q
    |||| |||||||| ||||||||||||| |||  ||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  15624729 cgtcgacagcaggattcgaacctgcgcaggcaaagcccaacagatttcgagtctgtctccttaaccactcggacatatcgact 15624811  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 43655225 - 43655148
Alignment:
Q  233 cgtcaacagcagggttcgaacctgcgcgggcgtagcccaacagatttcaagtctgtctccttaaccactcggacatat 310  Q
    |||| |||||||| ||||||||||||| |||  ||||||||||||||| |||||||||||||||||||||||||||||    
T  43655225 cgtcgacagcaggattcgaacctgcgcaggcaaagcccaacagatttcgagtctgtctccttaaccactcggacatat 43655148  T

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