View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1442_low_4 (Length: 425)
Name: NF1442_low_4
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 48877028 - 48876664
Alignment:
| Q |
1 |
aatccggtgcattgcaaagaggttgctctgaacttcagcgagatggccagtaagttcatggctatacgaatagannnnnnnnngtccagatgcagtaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48877028 |
aatccggtgcattgcaaagaggttgctctgaacttcagcgagatcgccagtaagttcatggctatacgaatagatttttttttgtccagatgcagtaaca |
48876929 |
T |
|
| Q |
101 |
tcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggccccatttggtaaaatcatatctactggcatttcttaat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
48876928 |
tcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggccccatttggtaaa-tcatatctactggcatttcttaat |
48876830 |
T |
|
| Q |
201 |
aattttgcaacgagaaaaatgaatgcttgtgatacactcattgccaagtagtttatagttcttacatttttgttcaataattatcaaagtattttcgaag |
300 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48876829 |
aattttgcaatgagaaaaatgaatgcttgtgatacactcattgccaagtagtttatagttcttacatttttgttcaataattatcaaagtattttcgaag |
48876730 |
T |
|
| Q |
301 |
taccaactttatgttcttattattcgagctaagatctctagtgactagccctatagaaaaaggggt |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48876729 |
taccaactttatgttcttattattcgagctaagatcactagtgactagccctatagaaaaaggggt |
48876664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 365 - 417
Target Start/End: Complemental strand, 48876609 - 48876557
Alignment:
| Q |
365 |
gtaacagaaatcaaaatgactgcacatttcaacaacatcatagtacctatgct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48876609 |
gtaacagaaatcaaaatgactgcacatttcaacaacatcatagtacctatgct |
48876557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 163
Target Start/End: Original strand, 8381353 - 8381420
Alignment:
| Q |
96 |
taacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggcc |
163 |
Q |
| |
|
||||||||||||||||||| |||| |||||| |||| | ||| ||||| |||| ||||||||||||| |
|
|
| T |
8381353 |
taacatcaacagttcttctattcaagttcttgagccgatcaatgctagctgaggaacaagctttggcc |
8381420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 88 - 163
Target Start/End: Original strand, 53456785 - 53456860
Alignment:
| Q |
88 |
agatgcagtaacatcaacagttcttctgttcacgttcttcagccaagcaaaactagccgagggacaagctttggcc |
163 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| || | ||||||||||||| |
|
|
| T |
53456785 |
agatgcaataacatcaacagttcttctgttcacattcttcagccaagcaacactagctgaagaacaagctttggcc |
53456860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University