View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1442_low_6 (Length: 415)

Name: NF1442_low_6
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1442_low_6
NF1442_low_6
[»] chr6 (21 HSPs)
chr6 (18-376)||(23887308-23887664)
chr6 (113-359)||(18129717-18129958)
chr6 (18-93)||(18129947-18130022)
chr6 (48-190)||(10219537-10219680)
chr6 (18-187)||(9307397-9307566)
chr6 (22-190)||(10067658-10067827)
chr6 (19-112)||(25085019-25085112)
chr6 (83-190)||(515990-516098)
chr6 (23-104)||(6524958-6525039)
chr6 (18-93)||(16431590-16431665)
chr6 (112-195)||(27100722-27100805)
chr6 (81-190)||(19264718-19264827)
chr6 (41-158)||(20565728-20565846)
chr6 (231-291)||(9093617-9093677)
chr6 (233-272)||(507171-507210)
chr6 (117-168)||(34937451-34937502)
chr6 (112-190)||(6699685-6699763)
chr6 (233-289)||(10749290-10749347)
chr6 (231-291)||(4247122-4247182)
chr6 (84-135)||(10349764-10349816)
chr6 (247-291)||(34611837-34611881)
[»] chr3 (26 HSPs)
chr3 (18-190)||(14984407-14984579)
chr3 (24-189)||(53705891-53706057)
chr3 (66-190)||(30843785-30843910)
chr3 (112-190)||(46848398-46848476)
chr3 (83-190)||(621857-621963)
chr3 (18-134)||(34979109-34979226)
chr3 (43-168)||(5800177-5800303)
chr3 (18-187)||(12832206-12832376)
chr3 (231-291)||(52618952-52619012)
chr3 (86-136)||(47944337-47944388)
chr3 (83-129)||(621664-621710)
chr3 (79-128)||(14984666-14984716)
chr3 (231-273)||(15304426-15304468)
chr3 (33-190)||(51889971-51890129)
chr3 (83-190)||(1182949-1183060)
chr3 (33-141)||(1183165-1183274)
chr3 (231-272)||(2128331-2128372)
chr3 (33-94)||(3941642-3941703)
chr3 (17-58)||(8355044-8355085)
chr3 (83-142)||(37326825-37326883)
chr3 (18-75)||(40954485-40954542)
chr3 (80-136)||(48048045-48048102)
chr3 (233-273)||(10101555-10101595)
chr3 (233-273)||(10212480-10212520)
chr3 (68-112)||(38989874-38989918)
chr3 (65-136)||(43838803-43838875)
[»] chr8 (19 HSPs)
chr8 (33-186)||(21602124-21602278)
chr8 (33-190)||(6393784-6393940)
chr8 (85-195)||(17488193-17488304)
chr8 (18-136)||(3662370-3662489)
chr8 (66-190)||(21601908-21602032)
chr8 (66-168)||(14523924-14524027)
chr8 (33-136)||(41303097-41303203)
chr8 (34-179)||(7680959-7681105)
chr8 (43-112)||(4586888-4586957)
chr8 (231-291)||(4558747-4558807)
chr8 (125-189)||(18080183-18080247)
chr8 (100-190)||(7574372-7574462)
chr8 (228-273)||(1112799-1112844)
chr8 (33-145)||(21145414-21145527)
chr8 (231-291)||(1470917-1470977)
chr8 (82-133)||(6915302-6915354)
chr8 (231-287)||(16210951-16211007)
chr8 (232-272)||(28784875-28784915)
chr8 (233-273)||(40280284-40280324)
[»] chr4 (40 HSPs)
chr4 (18-179)||(17381483-17381645)
chr4 (23-179)||(13834338-13834495)
chr4 (18-134)||(11839824-11839941)
chr4 (18-179)||(8170894-8171056)
chr4 (66-190)||(12034382-12034507)
chr4 (83-190)||(17381284-17381392)
chr4 (69-190)||(11840018-11840140)
chr4 (23-136)||(51150894-51151008)
chr4 (23-108)||(45615722-45615807)
chr4 (28-136)||(1758353-1758460)
chr4 (33-190)||(32934088-32934246)
chr4 (33-111)||(38932765-38932843)
chr4 (115-188)||(12922168-12922241)
chr4 (18-190)||(24806663-24806835)
chr4 (33-168)||(46804965-46805100)
chr4 (66-168)||(4161644-4161747)
chr4 (233-288)||(31038931-31038986)
chr4 (83-179)||(971856-971953)
chr4 (33-189)||(9297353-9297509)
chr4 (18-134)||(31903307-31903424)
chr4 (23-76)||(36409658-36409711)
chr4 (23-76)||(36423824-36423877)
chr4 (23-179)||(56095031-56095188)
chr4 (18-129)||(48973336-48973448)
chr4 (83-129)||(8170760-8170807)
chr4 (66-136)||(46804809-46804880)
chr4 (85-179)||(56095201-56095296)
chr4 (33-103)||(26499409-26499479)
chr4 (93-158)||(27146320-27146386)
chr4 (66-191)||(40317745-40317871)
chr4 (66-191)||(40327819-40327945)
chr4 (33-94)||(312709-312770)
chr4 (33-110)||(4161831-4161908)
chr4 (68-136)||(11358503-11358571)
chr4 (231-272)||(17884017-17884058)
chr4 (82-190)||(31903482-31903591)
chr4 (23-179)||(40407576-40407732)
chr4 (33-113)||(6552535-6552615)
chr4 (82-145)||(11358685-11358749)
chr4 (80-190)||(51151016-51151127)
[»] chr5 (19 HSPs)
chr5 (18-190)||(8206226-8206399)
chr5 (33-190)||(917106-917264)
chr5 (33-190)||(6217590-6217749)
chr5 (82-168)||(7756429-7756516)
chr5 (33-113)||(9023366-9023446)
chr5 (46-185)||(32270607-32270747)
chr5 (37-124)||(39194866-39194954)
chr5 (86-190)||(16127050-16127155)
chr5 (231-291)||(6582893-6582953)
chr5 (83-190)||(14468770-14468877)
chr5 (226-273)||(10363694-10363741)
chr5 (244-291)||(12425533-12425580)
chr5 (231-289)||(16945046-16945102)
chr5 (231-272)||(4014504-4014545)
chr5 (23-179)||(11497964-11498121)
chr5 (245-286)||(11835240-11835281)
chr5 (18-59)||(14460085-14460126)
chr5 (232-272)||(5963362-5963402)
chr5 (231-291)||(14295455-14295515)
[»] chr7 (22 HSPs)
chr7 (33-136)||(5362298-5362402)
chr7 (33-168)||(32996259-32996395)
chr7 (23-136)||(39608369-39608483)
chr7 (33-190)||(40355018-40355176)
chr7 (35-120)||(12927643-12927729)
chr7 (33-106)||(8062776-8062849)
chr7 (229-290)||(12834999-12835060)
chr7 (82-186)||(14669237-14669342)
chr7 (23-190)||(34703629-34703796)
chr7 (33-129)||(38838526-38838623)
chr7 (33-136)||(10228754-10228858)
chr7 (231-287)||(30456515-30456571)
chr7 (84-190)||(46720016-46720123)
chr7 (83-136)||(12849716-12849770)
chr7 (84-157)||(23457814-23457888)
chr7 (245-291)||(30180014-30180060)
chr7 (231-289)||(35536056-35536114)
chr7 (231-272)||(43152982-43153023)
chr7 (231-271)||(119859-119899)
chr7 (231-291)||(3802200-3802260)
chr7 (231-291)||(6824867-6824927)
chr7 (231-291)||(40689047-40689107)
[»] chr2 (18 HSPs)
chr2 (23-190)||(40124264-40124432)
chr2 (18-136)||(15301520-15301638)
chr2 (23-112)||(7165643-7165732)
chr2 (83-168)||(6788484-6788570)
chr2 (66-190)||(20167573-20167698)
chr2 (82-160)||(21603674-21603753)
chr2 (228-287)||(29300591-29300650)
chr2 (18-136)||(6788276-6788393)
chr2 (249-291)||(15377732-15377774)
chr2 (231-291)||(18066077-18066137)
chr2 (33-113)||(31967446-31967526)
chr2 (18-61)||(15816905-15816948)
chr2 (233-287)||(3673758-3673812)
chr2 (79-141)||(18902989-18903051)
chr2 (35-109)||(21603493-21603567)
chr2 (232-276)||(914031-914075)
chr2 (33-93)||(41746424-41746484)
chr2 (232-272)||(42457898-42457938)
[»] chr1 (25 HSPs)
chr1 (18-190)||(6541006-6541177)
chr1 (36-168)||(33747291-33747424)
chr1 (18-136)||(27463840-27463959)
chr1 (80-190)||(32669975-32670086)
chr1 (44-190)||(34177444-34177591)
chr1 (231-293)||(31517799-31517861)
chr1 (23-166)||(5529808-5529952)
chr1 (33-136)||(30050542-30050646)
chr1 (83-185)||(30519042-30519146)
chr1 (66-168)||(19464237-19464340)
chr1 (83-188)||(6727994-6728100)
chr1 (83-188)||(35684887-35684993)
chr1 (23-113)||(49880167-49880257)
chr1 (231-276)||(8852809-8852854)
chr1 (79-189)||(34177278-34177389)
chr1 (103-168)||(16192262-16192328)
chr1 (242-282)||(2992092-2992132)
chr1 (83-134)||(8779008-8779060)
chr1 (33-61)||(9890650-9890678)
chr1 (231-287)||(29793731-29793787)
chr1 (89-168)||(30050322-30050402)
chr1 (83-190)||(39162406-39162514)
chr1 (231-291)||(40304115-40304175)
chr1 (231-263)||(44251367-44251399)
chr1 (245-289)||(51190824-51190868)
[»] scaffold0045 (1 HSPs)
scaffold0045 (35-189)||(20536-20691)
[»] scaffold0284 (1 HSPs)
scaffold0284 (33-111)||(2447-2525)
[»] scaffold0050 (1 HSPs)
scaffold0050 (81-138)||(81347-81405)
[»] scaffold0329 (2 HSPs)
scaffold0329 (113-190)||(6470-6547)
scaffold0329 (83-190)||(6196-6304)
[»] scaffold0114 (1 HSPs)
scaffold0114 (33-94)||(35039-35100)
[»] scaffold0211 (1 HSPs)
scaffold0211 (33-113)||(20062-20142)


Alignment Details
Target: chr6 (Bit Score: 319; Significance: 1e-180; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 23887664 - 23887308
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcaggact 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||     
T  23887664 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacaggg-ctattttgactaacaaagtgcacaatcaggaca 23887566  T
Q  118 attttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactattagccaagataaaataattataagccctt 217  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  23887565 attttgaaatttcgatacaatgaaaaaccattatgactacttgttacacatccagg-accaacatgactattagccaagataaaataatgataagccctt 23887467  T
Q  218 aaatgtaagctatgctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgtctactcgagcttatgagaataacttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23887466 aaatgtaagctatgctatttctacaataaaagataaaataaagttagattgttatcttagaagttataagctgtctactcgagcttatgagaataacttg 23887367  T
Q  318 aaaacagcttacgaagatgtcaaacagtctcacgaatgtttaaataattgtgtaacttc 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23887366 aaaacagcttacgaagatgtcaaacagtctcacgaatgtttaaataagtgtgtaacttc 23887308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 113 - 359
Target Start/End: Complemental strand, 18129958 - 18129717
Alignment:
Q  113 ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactattagccaagataaaataattataag 212  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  18129958 ggactattttgaaatttcgatacaatgaaggaccattatgactacttgttacacatcctgggaccaacatgactattagccaagataaaataatgataag 18129859  T
Q  213 cccttaaatgtaagctatgctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgtctactcgagcttatgagaata 312  Q
    ||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18129858 cccttaaatgtaag-----ctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgtctactcgagcttatgagaata 18129764  T
Q  313 acttgaaaacagcttacgaagatgtcaaacagtctcacgaatgttta 359  Q
    |||| |||||| |||||||| ||| |||||||||| |||| ||||||    
T  18129763 acttcaaaacaacttacgaacatgccaaacagtctaacgagtgttta 18129717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 93
Target Start/End: Complemental strand, 18130022 - 18129947
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttga 93  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18130022 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttga 18129947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 10219680 - 10219537
Alignment:
Q  48 atatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcagg-actattttgaaatttcgatacaatgaagaacc 146  Q
    ||||||||||||||   ||||||||||| | ||| |||||||||||| ||||||||||||||||||| |||||||||||||||||| ||| | | | ||     
T  10219680 atatgacaatattaacgaattattttaacgtcagagactattttgactaacaaagtgcacaatcaggaactattttgaaatttcgacacattaagggact 10219581  T
Q  147 attatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||| || ||||| ||||||||| |||||||||| ||||||||||    
T  10219580 attgtggctactcgttacacattcagggaccaaaatgactatta 10219537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 9307397 - 9307566
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggac 116  Q
    ||||||||||| || ||||||||||||||||||||||||| |||   ||||||||||||| ||||||||| |||||| ||  || |||||| ||| ||||    
T  9307397 atgaaaataagtaagtatattgaaggactaatatgacaatgttaatgaattattttaatgtcagggacta-tttgacaaatgaaatgcacattcagggac 9307495  T
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgacta 187  Q
    |||||| ||||||| ||||| ||  | |||||||| |||||| ||||||||| ||||||| || |||||||    
T  9307496 tattttaaaatttcaatacattggggtaccattataactactcgttacacattcagggactaaaatgacta 9307566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 10067658 - 10067827
Alignment:
Q  22 aaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactatt 120  Q
    ||||||| || ||||||||| |||||||||||||||||||   || |||||||||| ||| |||||||||||  |||||| | ||||||||| |||||||    
T  10067658 aaataagtaagtatattgaatgactaatatgacaatattaacaaagtattttaatgtcagagactattttgattaacaaaatacacaatcagagactatt 10067757  T
Q  121 ttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    || ||||||||||||| |||   || ||| ||  |||||||||||||| ||  ||| || ||||||||||    
T  10067758 ttaaaatttcgatacattgagagactattgtggttacttgttacacattcaaagactaaaatgactatta 10067827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 25085019 - 25085112
Alignment:
Q  19 tgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca 112  Q
    |||||||||| || ||||||||| || ||||||||||||||||   |||||||||||||  |  |||||||||||| |||||||||||||||||    
T  25085019 tgaaaataagtaagtatattgaaagaataatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatca 25085112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 515990 - 516098
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaag-aaccattatgactacttgttacacatccagggaccaac 180  Q
    |||||||||||| ||| |||||||||||||  |||||||||| ||||||||||| || |||  ||  || |||||||| ||||||||| ||||||||||     
T  515990 gactattttgactaacgaagtgcacaatcattgactattttggaatttcgatac-atcaagttactgttgtgactactcgttacacattcagggaccaaa 516088  T
Q  181 atgactatta 190  Q
    ||||||||||    
T  516089 atgactatta 516098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 104
Target Start/End: Original strand, 6524958 - 6525039
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtg 104  Q
    |||||| || |||||||||||||||||||||||||||||   || ||||||||||  | ||||||||||||| ||| |||||    
T  6524958 aataagtaaatatattgaaggactaatatgacaatattaatgaagtattttaatgttacggactattttgacaaacgaagtg 6525039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 93
Target Start/End: Original strand, 16431590 - 16431665
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttga 93  Q
    |||| |||||| || ||||||||| |||||||||||||||||||   |||||||||||||  || |||||||||||    
T  16431590 atgacaataagtaagtatattgaatgactaatatgacaatattagtgaattattttaatgttagagactattttga 16431665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 195
Target Start/End: Original strand, 27100722 - 27100805
Alignment:
Q  112 aggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactattagccaa 195  Q
    |||||||||||||||||| |||| | ||| |||| ||||||||||||  ||||| ||  ||||||||| |||||||||| ||||    
T  27100722 aggactattttgaaattttgatatactgatgaactattatgactactgattacaaatttagggaccaaaatgactattacccaa 27100805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 190
Target Start/End: Original strand, 19264718 - 19264827
Alignment:
Q  81 gggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    |||||||||||||| |||| |||||| |||||| ||||||||| ||||||||||||| |  || || ||| |||||||| ||||||||| || ||||  |    
T  19264718 gggactattttgactaacatagtgcataatcagagactattttaaaatttcgatacattagag-actattgtgactactcgttacacattcaaggacgta 19264816  T
Q  180 catgactatta 190  Q
     ||||||||||    
T  19264817 aatgactatta 19264827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 158
Target Start/End: Original strand, 20565728 - 20565846
Alignment:
Q  41 aggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatg 139  Q
    ||||||||||||| |||||||   || ||||||||||  | ||| ||||||||| | | ||||| |||||||| ||||||||| ||| ||||||||| ||    
T  20565728 aggactaatatgaaaatattaacgaaatattttaatgttatggattattttgactagcgaagtggacaatcagagactattttaaaaattcgatacattg 20565827  T
Q  140 aagaaccattatgactact 158  Q
    | | || ||||||||||||    
T  20565828 atggactattatgactact 20565846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 9093677 - 9093617
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| |  ||||||||||||||||||| ||||||||| || ||| ||||||||||    
T  9093677 gctatttctatatcaaaagataaaataaagttaaattgttttcgtataagctataagctgt 9093617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 233 - 272
Target Start/End: Original strand, 507171 - 507210
Alignment:
Q  233 tatttctacaataaaagataaaataaagttagattgtttt 272  Q
    |||||||| || ||||||||||||||||||||||||||||    
T  507171 tatttctataacaaaagataaaataaagttagattgtttt 507210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 34937502 - 34937451
Alignment:
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacat 168  Q
    ||||||||||||| |||||| |||||||| ||| |||||||| |||||||||    
T  34937502 tattttgaaatttggatacattgaagaactattgtgactactcgttacacat 34937451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 6699685 - 6699763
Alignment:
Q  112 aggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||||||||||||| || |||| | ||| | || |||||| |||||||||| ||||  ||||||||| ||||||||||    
T  6699685 aggactattttgaaaatttgatatattgagggactattatgcctacttgttatacatttagggaccaaaatgactatta 6699763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 289
Target Start/End: Complemental strand, 10749347 - 10749290
Alignment:
Q  233 tatttctacaataaaagataaaataaagttagattgttttcttagaa-gttataagct 289  Q
    |||||||| |||||||||||||||||||||| ||| ||||| || || ||||||||||    
T  10749347 tatttctataataaaagataaaataaagttaaattattttcatataaggttataagct 10749290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 4247182 - 4247122
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| || ||||||||||||| |||| |  ||||||| || ||||||||||||||    
T  4247182 gctatttctataacaaaagataaaatagagttggtctgttttcatataagttataagctgt 4247122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 135
Target Start/End: Complemental strand, 10349816 - 10349764
Alignment:
Q  84 actattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatac 135  Q
    ||||||||||  ||| ||||||||||| | |||||||||||||||||||||||    
T  10349816 actattttgattaacgaagtgcacaatgaaggactattttgaaatttcgatac 10349764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 34611837 - 34611881
Alignment:
Q  247 aagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    ||||||||||||||||| |||||||||||| ||| |||| |||||    
T  34611837 aagataaaataaagttaaattgttttcttataagctataggctgt 34611881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 8e-34; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 14984579 - 14984407
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggac 116  Q
    |||| ||||||||| |||||||||||| ||||||||||||||||   || |||||||||| |||| ||||||||||| ||| ||||||||||||| |||     
T  14984579 atgacaataagcaagtatattgaaggattaatatgacaatattaacgaaatattttaatgtcaggaactattttgactaacgaagtgcacaatcagggag 14984480  T
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    |||||||||||||||||| | ||| | || ||| |||||||| ||||||||| || ||||||| ||||||||||    
T  14984479 tattttgaaatttcgatatattgagggactattgtgactactcgttacacattca-ggaccaaaatgactatta 14984407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 53705891 - 53706057
Alignment:
Q  24 ataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactatttt 122  Q
    ||||| || |||||||||  ||||||||||||||||||   || ||||||||||  || || |||||||||  |||||||||||||| | ||||||||||    
T  53705891 ataagtaagtatattgaataactaatatgacaatattaacaaagtattttaatgcgagagattattttgactgacaaagtgcacaattatggactatttt 53705990  T
Q  123 gaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatt 189  Q
    |||||||||||||| ||| | || ||| || ||||||||||||||  ||  |||||| |||||||||    
T  53705991 gaaatttcgatacagtgagggactattttggctacttgttacacaatcaaagaccaaaatgactatt 53706057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 30843785 - 30843910
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaaga-accattatgactacttgtta 163  Q
    |||||||||  | |||||||||||||||  |||||||||||||||||| |||||||||| ||||| ||||| || |||| || ||| ||||||||  |||    
T  30843785 attattttagcgtcagggactattttgattaacaaagtgcacaatcagagactattttggaattttgatac-attaagagactattgtgactactcatta 30843883  T
Q  164 cacatccagggaccaacatgactatta 190  Q
    ||||| |||| |||||  |||||||||    
T  30843884 cacattcaggaaccaaagtgactatta 30843910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 112 - 190
Target Start/End: Original strand, 46848398 - 46848476
Alignment:
Q  112 aggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    |||||||||||||||||| |||||| ||| |||| ||| ||||||||  |||||||| ||||||||||  |||||||||    
T  46848398 aggactattttgaaattttgatacattgaggaactattttgactactcattacacattcagggaccaaagtgactatta 46848476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 621857 - 621963
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaaca 181  Q
    |||||||||||| ||||||||||||| | | ||||||||||||||||| |||||| |||   || ||||||||||||  |||||||| ||| ||||||      
T  621857 gactattttgactaacaaagtgcacagttagggactattttgaaattttgatacattga--gactattatgactactcattacacattcagagaccaaag 621954  T
Q  182 tgactatta 190  Q
    |||||||||    
T  621955 tgactatta 621963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 34979109 - 34979226
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaa-tcaggac 116  Q
    |||| |||||| || ||||||||| ||||||||||| |||||||   || ||||||||||  || |||||||||||| |||||| ||||||| | |  ||    
T  34979109 atgacaataagtaagtatattgaatgactaatatgataatattaacgaaatattttaatgtgagagactattttgactaacaaaatgcacaattaaaaac 34979208  T
Q  117 tattttgaaatttcgata 134  Q
    |||||| |||||||||||    
T  34979209 tattttaaaatttcgata 34979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 168
Target Start/End: Complemental strand, 5800303 - 5800177
Alignment:
Q  43 gactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaa-tcaggactattttgaaatttcgatacaatgaa 141  Q
    ||||||||||||||||||| ||||  |||||||||  || |||||||||||| || | || ||| || | ||||||||||| |||| || ||| | ||||    
T  5800303 gactaatatgacaatattaaacaaacattttaatgtaagagactattttgactaatatagcgcataattaaggactattttaaaatatcaatatattgaa 5800204  T
Q  142 gaaccattatgactacttgttacacat 168  Q
    |||| ||| ||||||||  ||||||||    
T  5800203 gaactattgtgactactcattacacat 5800177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 12832206 - 12832376
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggac 116  Q
    |||||||||||  | |||||||||||||| ||||||||||||||   ||  ||||||||   || |||||||||||   || ||||||||| | | ||||    
T  12832206 atgaaaataagttagtatattgaaggacttatatgacaatattaatgaagcattttaatataagagactattttgatttacgaagtgcacagttagggac 12832305  T
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgacta 187  Q
    ||||  ||| |||||||||| ||||  || ||| || |||||| ||||||||  ||||||||| |||||||    
T  12832306 tattgcgaagtttcgatacattgaaagactattgtgtctacttattacacatttagggaccaaaatgacta 12832376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 52618952 - 52619012
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| || ||| ||| ||||||||||| ||||||||| || ||||||||||||||    
T  52618952 gctatttctaaaacaaatgattaaataaagttaaattgttttcatataagttataagctgt 52619012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 86 - 136
Target Start/End: Complemental strand, 47944388 - 47944337
Alignment:
Q  86 tattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgataca 136  Q
    ||||||||| |||||||||||||||| | ||||||||| |||||||||||||    
T  47944388 tattttgactaacaaagtgcacaatcaaagactattttaaaatttcgataca 47944337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 621710 - 621664
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcaggactattttgaaattt 129  Q
    |||||||||||  ||| ||||||||||||| ||||||||||||||||    
T  621710 gactattttgattaacgaagtgcacaatcacgactattttgaaattt 621664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 128
Target Start/End: Original strand, 14984666 - 14984716
Alignment:
Q  79 cagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatt 128  Q
    |||||||||||||||  ||||||||||||||||| ||||||||||| ||||    
T  14984666 cagggactattttgattaacaaagtgcacaatcagggactattttgcaatt 14984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 273
Target Start/End: Complemental strand, 15304468 - 15304426
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttc 273  Q
    |||||||||| || ||||||||||||||||||| |||||||||    
T  15304468 gctatttctataacaaaagataaaataaagttaaattgttttc 15304426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 51889971 - 51890129
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcg 131  Q
    |||||| ||||||||||| |||| |||||   || |||||||||| | | |||||||||||| | ||||||  | |||||| ||||||||||||| |||     
T  51889971 tatattaaaggactaataagacactattaacaaagtattttaatgtcggagactattttgactagcaaagtatataatcagagactattttgaaaattca 51890070  T
Q  132 atacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||| ||| | || ||| |  ||| ||||  |||||  ||||||||| ||||||||||    
T  51890071 atacactgagggactattgtagctagttgtggcacattaagggaccaaaatgactatta 51890129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 1183060 - 1182949
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgatacaatgaagaaccatt---atgactacttgttacacatccagggacca 178  Q
    |||||||||||| |||||||||||||||| ||||||| ||| ||| ||  ||||| ||||  || |||   |||||||||  |||||||||||||||| |    
T  1183060 gactattttgactaacaaagtgcacaatcaaggactactttaaaacttttatacattgaaatactattataatgactactcattacacatccagggacta 1182961  T
Q  179 acatgactatta 190  Q
    |  |||||||||    
T  1182960 aagtgactatta 1182949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 141
Target Start/End: Original strand, 1183165 - 1183274
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcg 131  Q
    ||||||||| |||| ||||||||||||||   || |||||||||  ||  ||||||||||||   | |||||||||||||  || |||||||||||||||    
T  1183165 tatattgaatgactgatatgacaatattagtgaaatattttaatatcaaagactattttgactgtcgaagtgcacaatcatagattattttgaaatttcg 1183264  T
Q  132 atacaatgaa 141  Q
     |||| ||||    
T  1183265 gtacattgaa 1183274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 2128372 - 2128331
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgtttt 272  Q
    |||||||||| || ||||||||||||||||||| ||||||||    
T  2128372 gctatttctataacaaaagataaaataaagttaaattgtttt 2128331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 3941703 - 3941642
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgac 94  Q
    |||||||||||||||||||||||||||||   || ||| |||||| ||| |||| |||||||    
T  3941703 tatattgaaggactaatatgacaatattaatgaagtatcttaatggcagagactgttttgac 3941642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 8355044 - 8355085
Alignment:
Q  17 gatgaaaataagcaattatattgaaggactaatatgacaata 58  Q
    |||||||||||| | ||||||||||||||| |||||||||||    
T  8355044 gatgaaaataagtacttatattgaaggactgatatgacaata 8355085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 142
Target Start/End: Original strand, 37326825 - 37326883
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaag 142  Q
    |||||||||||| ||||  |||||||||||| |||| |||||||||||||||||| |||||    
T  37326825 gactattttgactaaca--gtgcacaatcagagacttttttgaaatttcgatacattgaag 37326883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 40954485 - 40954542
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaa 75  Q
    |||| |||||| || |||||||||  |||||||||||||||||| | |||||||||||    
T  40954485 atgacaataagtaagtatattgaaacactaatatgacaatattaaaaaattattttaa 40954542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Original strand, 48048045 - 48048102
Alignment:
Q  80 agggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgataca 136  Q
    ||||||||||||||| ||| || |||||||||| ||||| ||||| ||||||||||||    
T  48048045 agggactattttgacaaacgaaatgcacaatcagggactgttttggaatttcgataca 48048102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 10101595 - 10101555
Alignment:
Q  233 tatttctacaataaaagataaaataaagttagattgttttc 273  Q
    |||||||| || ||||||||||||||||||| |||||||||    
T  10101595 tatttctataacaaaagataaaataaagttaaattgttttc 10101555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 10212520 - 10212480
Alignment:
Q  233 tatttctacaataaaagataaaataaagttagattgttttc 273  Q
    |||||||| || ||||||||||||||||||| |||||||||    
T  10212520 tatttctataacaaaagataaaataaagttaaattgttttc 10212480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 38989874 - 38989918
Alignment:
Q  68 tattttaatgacagggactattttgaccaacaaagtgcacaatca 112  Q
    |||||||| | ||| |||||||||||||||| |||||||||||||    
T  38989874 tattttaacgtcagagactattttgaccaacgaagtgcacaatca 38989918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 43838803 - 43838875
Alignment:
Q  65 aattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgataca 136  Q
    ||||||||||| | ||  |||||||||||| |||||| ||||||||| | ||||||||| |||||| ||||||    
T  43838803 aattattttaacgtcaaagactattttgactaacaaaatgcacaatcaatgactattttaaaattttgataca 43838875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 33 - 186
Target Start/End: Original strand, 21602124 - 21602278
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcg 131  Q
    |||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||  ||  |||||| |||||  |||||||||||||||||||    
T  21602124 tatattgaaggactaatatgacaatattaacgaattattttaatgtcagggactattttgattaatgaagtgcgcaatcggggactattttgaaatttcg 21602223  T
Q  132 atacaatgaagaaccattatgactacttgttacacatccagggaccaacatgact 186  Q
    ||| | ||| | ||||||||| ||||||||| ||||| || ||||||| ||||||    
T  21602224 atatattgagggaccattatggctacttgttgcacattcaaggaccaaaatgact 21602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 33 - 190
Target Start/End: Complemental strand, 6393940 - 6393784
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcg 131  Q
    |||||||||| |||||||||| ||||||| | || ||||||||||  ||| ||||||||||| || |||||||||||||| | |||||||||||||||||    
T  6393940 tatattgaagaactaatatgataatattaaagaactattttaatgttaggaactattttgactaataaagtgcacaatcatgaactattttgaaatttcg 6393841  T
Q  132 atacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||| || || ||||||||  ||||||||||||||| ||  |||||| ||||||||||    
T  6393840 atacattg-aggaccattattgctacttgttacacattca-tgaccaaaatgactatta 6393784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 85 - 195
Target Start/End: Original strand, 17488193 - 17488304
Alignment:
Q  85 ctattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatg 183  Q
    ||||||||||||||| | | |||||||| ||||||||||||||||||| |||| ||| | || ||| |||||||||||||||||| |||||| ||| |||    
T  17488193 ctattttgaccaacataattcacaatcaaggactattttgaaatttcgctacattgagggactattgtgactacttgttacacattcagggagcaaaatg 17488292  T
Q  184 actattagccaa 195  Q
    ||| ||| ||||    
T  17488293 actgttacccaa 17488304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 3662489 - 3662370
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggac 116  Q
    |||| |||||| || |||||| ||| ||||||||||||||||||   |||||||||||||  |||||||| |||||| | ||| |||||||||| || ||    
T  3662489 atgacaataagtaagtatattaaagaactaatatgacaatattaacaaattattttaatgctagggactaatttgacaagcaatgtgcacaatcaagaac 3662390  T
Q  117 tattttgaaatttcgataca 136  Q
    |||||| |||||| ||||||    
T  3662389 tattttaaaattttgataca 3662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 21602032 - 21601908
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    ||||||||| || ||||||||| |||||| ||||| |||||||||||| |||||||||| ||||| |||||| ||| | || ||| |||||| |||||||    
T  21602032 attattttagtgtcagggactactttgactaacaacgtgcacaatcagagactattttggaattttgatacattgatggactattgtgactatttgttac 21601933  T
Q  165 acatccagggaccaacatgactatta 190  Q
    | || || ||||||| ||||| ||||    
T  21601932 atattca-ggaccaaaatgaccatta 21601908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 14523924 - 14524027
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatcagga-ctattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    |||||||| | | ||| ||||||| |||| ||| ||||| ||||||| || ||||||||||||||||| ||| | | | || ||||||||||||||||||    
T  14523924 attattttgacgccagagactattatgactaacgaagtgaacaatcaagaactattttgaaatttcgacacattaagggactattatgactacttgttac 14524023  T
Q  165 acat 168  Q
    ||||    
T  14524024 acat 14524027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 41303097 - 41303203
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatg--acagggactattttgaccaacaaagtgcacaatc-aggactattttgaaattt 129  Q
    |||||| || |||||||||||||||||||   |||||||||||||  |  |||||||||||||| | ||||||||| |||| | ||||||||| ||||||    
T  41303097 tatattaaaagactaatatgacaatattaacaaattattttaatgttatcgggactattttgactagcaaagtgcataatcaatgactattttaaaattt 41303196  T
Q  130 cgataca 136  Q
     ||||||    
T  41303197 tgataca 41303203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 179
Target Start/End: Original strand, 7680959 - 7681105
Alignment:
Q  34 atattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcga 132  Q
    ||||||||  ||||| ||||||||||||   |||||||||||||  |||||| |||||||| ||| || ||||||||| |  |||||||| |||||| ||    
T  7680959 atattgaaatactaagatgacaatattaacgaattattttaatgttagggacgattttgactaacgaaatgcacaatcaaatactattttaaaattttga 7681058  T
Q  133 tacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    |||| ||| | || | || |  ||||| |||||||| ||||||||||    
T  7681059 tacattgagggactactagggttacttcttacacattcagggaccaa 7681105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 43 - 112
Target Start/End: Original strand, 4586888 - 4586957
Alignment:
Q  43 gactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca 112  Q
    |||||||||||||||||||   |||||||||||||   |||||||||||||| | ||||||||| |||||    
T  4586888 gactaatatgacaatattagcaaattattttaatgttggggactattttgactatcaaagtgcataatca 4586957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 4558747 - 4558807
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || | | ||||||||||    
T  4558747 gctatttctataataaaagataaaataaagttaaattattttcatatatgctataagctgt 4558807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 18080247 - 18080183
Alignment:
Q  125 aatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatt 189  Q
    |||||| ||||| ||||| |||||| |||||| |||||||||||  ||||||||| |||||||||    
T  18080247 aatttcaatacattgaaggaccattgtgactatttgttacacatttagggaccaaaatgactatt 18080183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 190
Target Start/End: Complemental strand, 7574462 - 7574372
Alignment:
Q  100 aagtgcacaatcagg-actattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||| ||||||||| ||||||||||||||| |||||| ||  | || ||||||| |||||||||||||| || ||||||| ||| ||||||    
T  7574462 aagtgaacaatcagggactattttgaaattt-gatacattgtgggactattatgattacttgttacacattcaaggaccaaaatgtctatta 7574372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 273
Target Start/End: Original strand, 1112799 - 1112844
Alignment:
Q  228 tatgctatttctacaataaaagataaaataaagttagattgttttc 273  Q
    ||||||||||||| || |||||||||||||| |||| |||||||||    
T  1112799 tatgctatttctataacaaaagataaaataaggttaaattgttttc 1112844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 145
Target Start/End: Complemental strand, 21145527 - 21145414
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcg 131  Q
    ||||||||  ||||||||||| |||||||   ||  ||||||| |  || |||||||||||| |||| |||||||||| | | ||||||||||||||||     
T  21145527 tatattgagagactaatatgataatattaacgaaacattttaacgtaagagactattttgactaacatagtgcacaattatgaactattttgaaatttca 21145428  T
Q  132 atacaatgaagaac 145  Q
    | ||| ||||||||    
T  21145427 aaacattgaagaac 21145414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 1470977 - 1470917
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| |||||||||||||||||||| | |||  |||| || ||| ||||||||||    
T  1470977 gctatttctataataaaagataaaataaagtcaaattactttcatataagctataagctgt 1470917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 6915354 - 6915302
Alignment:
Q  82 ggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgat 133  Q
    ||||||||||||| |||||| |||||||||| ||||  |||||||||||||||    
T  6915354 ggactattttgactaacaaaatgcacaatcagggaccgttttgaaatttcgat 6915302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 16211007 - 16210951
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataag 287  Q
    |||||||||| | |||| ||||||||||||||| ||||||||| || ||| ||||||    
T  16211007 gctatttctatagtaaatgataaaataaagttacattgttttcatataagctataag 16210951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 28784915 - 28784875
Alignment:
Q  232 ctatttctacaataaaagataaaataaagttagattgtttt 272  Q
    ||||||||| |||||||||||||||||||| | ||||||||    
T  28784915 ctatttctaaaataaaagataaaataaagtcaaattgtttt 28784875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 40280324 - 40280284
Alignment:
Q  233 tatttctacaataaaagataaaataaagttagattgttttc 273  Q
    ||||||||||| ||||||||||||||||| | |||||||||    
T  40280324 tatttctacaacaaaagataaaataaagtaaaattgttttc 40280284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 17381483 - 17381645
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggac 116  Q
    |||| |||||| || |||||||||||||||||||||||||||||   || |||||||||  || ||||||||||||  ||||||||||||||||| ||||    
T  17381483 atgataataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatatcaaggactattttgattaacaaagtgcacaatcagggac 17381582  T
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    ||||||| ||||| |||||| ||| | || ||| |||||||||||||| ||| ||||||||||    
T  17381583 tattttggaattttgatacattgagggactattgtgactacttgttactcattcagggaccaa 17381645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 13834495 - 13834338
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattt 121  Q
    |||||| || |||||||||||||||||||||||||||||   |||||||||||||  |  |||||||||||| |||||||||||||||| ||||||||||    
T  13834495 aataagtaagtatattgaaggactaatatgacaatattaacaaattattttaatgttaaagactattttgactaacaaagtgcacaatcaaggactattt 13834396  T
Q  122 tgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    | |||||| |||| | ||| | || ||||||  ||||  |||||||| ||||||||||    
T  13834395 taaaattttgataaattgagggactattatggttactccttacacattcagggaccaa 13834338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 11839941 - 11839824
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggac 116  Q
    |||| |||||| || | |||||||||||||||||||||||||||   || |||||||||| || ||||||||||||| ||| | ||||||||||  ||||    
T  11839941 atgacaataagtaagtgtattgaaggactaatatgacaatattaacgaagtattttaatgtcaaggactattttgactaacgaggtgcacaatctgggac 11839842  T
Q  117 tattttgaaatttcgata 134  Q
    ||||||||||||||||||    
T  11839841 tattttgaaatttcgata 11839824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 179
Target Start/End: Original strand, 8170894 - 8171056
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gac 116  Q
    |||| |||||| || |||||||||| ||||||||||||||||||   ||  ||||||||   || || ||||||||| ||| || |||| |||||| |||    
T  8170894 atgacaataagtaagtatattgaagtactaatatgacaatattaatgaaacattttaatattagagattattttgactaacgaattgcaaaatcagagac 8170993  T
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    |||||||||||||  ||||| ||| | || ||||||||||||  |||||||||||||||||||    
T  8170994 tattttgaaatttttatacattgagggactattatgactactcattacacatccagggaccaa 8171056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 12034507 - 12034382
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    ||||||||| || ||| |||||||||||| ||||||||  |||||||| |||||||||| ||||| |||||| ||| | || ||| |||||||| ||||     
T  12034507 attattttagtgtcagagactattttgactaacaaagtatacaatcagagactattttgcaattttgatacattgagggactattgtgactactcgttat 12034408  T
Q  165 acatccagggaccaacatgactatta 190  Q
    |||| |||||||||| ||||||||||    
T  12034407 acattcagggaccaaaatgactatta 12034382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 17381392 - 17381284
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaaca 181  Q
    |||||||||||| ||||||||| || ||||| |||| ||||||||||| |||||| ||||| || ||| |||||||||| ||||||| |||| ||||| |    
T  17381392 gactattttgactaacaaagtggactatcagagacttttttgaaattttgatacattgaaggactattgtgactacttgctacacattcaggaaccaaaa 17381293  T
Q  182 tgactatta 190  Q
    |||||||||    
T  17381292 tgactatta 17381284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 11840018 - 11840140
Alignment:
Q  69 attttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacaca 167  Q
    ||||||| | |||||||||||||||  ||||||||||||||||| ||||||||||||||||| |||||| ||| |  | |||  |||||||  |||| ||    
T  11840018 attttaacgtcagggactattttgattaacaaagtgcacaatcagggactattttgaaattttgatacattgagggcctattgcgactactccttacgca 11840117  T
Q  168 tccagggaccaacatgactatta 190  Q
    | |||||||||| ||||||||||    
T  11840118 ttcagggaccaaaatgactatta 11840140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 51151008 - 51150894
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattt 121  Q
    |||||| || |||||||||| ||||||||||||||||||   || ||||||||||  |||||||||||| || |||||| |||||||||| | |||||||    
T  51151008 aataagtaagtatattgaagtactaatatgacaatattaacaaaatattttaatgttagggactattttcactaacaaaatgcacaatcacgaactattt 51150909  T
Q  122 tgaaatttcgataca 136  Q
    | |||||| ||||||    
T  51150908 taaaattttgataca 51150894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 45615722 - 45615807
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcaca 108  Q
    |||||| || |||||||||||||||| ||||||||||||   ||||||||||||   || |||||||||||| |||||||||||||    
T  45615722 aataagtaagtatattgaaggactaaaatgacaatattaacaaattattttaatattagagactattttgactaacaaagtgcaca 45615807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 1758460 - 1758353
Alignment:
Q  28 gcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaa 126  Q
    ||||| ||||||||||||||||  ||||||||||   || |||||||||| || ||||||||||||| ||| |||| |||||| ||  ||||||||||||    
T  1758460 gcaatgatattgaaggactaat--gacaatattaacgaagtattttaatgtcaaggactattttgactaacgaagtacacaataagaaactattttgaaa 1758363  T
Q  127 tttcgataca 136  Q
    ||| ||||||    
T  1758362 ttttgataca 1758353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 32934088 - 32934246
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcg 131  Q
    |||||| || ||||||| |||||||||||   |||||||||||||  ||  ||||||||||| | |||||||||||||| |  |||||||| |||||| |    
T  32934088 tatattaaaagactaatgtgacaatattaacaaattattttaatgttagaaactattttgactagcaaagtgcacaatcaaaaactattttaaaattttg 32934187  T
Q  132 atacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||| ||| | || ||||||   |||  |||||||| |||||||||| |||| |||||    
T  32934188 atacattgagggactattatggtcactccttacacattcagggaccaaaatgattatta 32934246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 111
Target Start/End: Original strand, 38932765 - 38932843
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc 111  Q
    |||||||||||||||||||||||||||||   || ||||||||||  || |||||||||||| |||||| || ||||||    
T  38932765 tatattgaaggactaatatgacaatattaatgaaatattttaatgttagagactattttgactaacaaaatgtacaatc 38932843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 12922241 - 12922168
Alignment:
Q  115 actattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactat 188  Q
    |||||||||||||||||||||| ||||  || ||| ||||||||| |||||||| |||||||||| || |||||    
T  12922241 actattttgaaatttcgatacattgaaatactattgtgactacttattacacattcagggaccaaaataactat 12922168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 24806663 - 24806835
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcaggact 117  Q
    |||| |||||| || |||||||||  |||| |||||||||||||   |||||||||||||  || |||||||||||| ||  || | || ||| ||||||    
T  24806663 atgacaataagtaagtatattgaaaaactactatgacaatattaacaaattattttaatgttagagactattttgactaatgaaatacataataaggact 24806762  T
Q  118 attttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||| ||||||| ||||| | | | || ||| | ||||||| |||| ||| |||  ||||| ||||||||||    
T  24806763 attttcaaatttcaatacattaagggactattgtaactacttattacgcattcagataccaaaatgactatta 24806835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 168
Target Start/End: Original strand, 46804965 - 46805100
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcg 131  Q
    |||||||||| ||| | |||| |||||||   || |||||||||  |||||||||||||||||||| ||| |||||||||| ||| ||||| ||||||      
T  46804965 tatattgaagaactgacatgataatattaatgaaatattttaatatcagggactattttgaccaacgaag-gcacaatcagagacaattttaaaatttta 46805063  T
Q  132 atacaatgaagaaccattatgactacttgttacacat 168  Q
    ||| | ||||  || |||||||||||| |||||||||    
T  46805064 atatattgaaagactattatgactactcgttacacat 46805100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 4161747 - 4161644
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    |||||||||  | ||| ||||||||||||||||| | || | ||||| ||||||||||||||||| |||||| ||||| || ||| ||||||||  ||||    
T  4161747 attattttagagtcagagactattttgaccaacagaatgtataatcaaggactattttgaaattttgatacattgaaggactattgtgactactcattac 4161648  T
Q  165 acat 168  Q
    ||||    
T  4161647 acat 4161644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 288
Target Start/End: Complemental strand, 31038986 - 31038931
Alignment:
Q  233 tatttctacaataaaagataaaataaagttagattgttttcttagaagttataagc 288  Q
    |||||||||||||| |||||||||||||| | ||||||||| || |||||||||||    
T  31038986 tatttctacaataatagataaaataaagtcaaattgttttcatataagttataagc 31038931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 971953 - 971856
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    ||||| |||||| |||||||||||||||||  |||||||||||||||| |||||| ||||  || ||| |||| ||| |||||| || ||| ||||||    
T  971953 gactactttgactaacaaagtgcacaatcaaagactattttgaaattttgatacattgaatgactattgtgacaactcgttacaaattcagtgaccaa 971856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 189
Target Start/End: Complemental strand, 9297509 - 9297353
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcg 131  Q
    |||||| || |||||||||||||||||||   || |||||||||| ||   || |||||||| ||||||||  | ||||| |||||||||| ||||||||    
T  9297509 tatatttaatgactaatatgacaatattaacaaagtattttaatgtcaataacaattttgactaacaaagtataaaatcatggactattttaaaatttcg 9297410  T
Q  132 atacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatt 189  Q
    ||| | ||||| || ||| || ||| ||| ||||||| || ||| ||| |||||||||    
T  9297409 atatattgaaggactattgtggcta-ttggtacacattcaaggatcaaaatgactatt 9297353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 134
Target Start/End: Complemental strand, 31903424 - 31903307
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggac 116  Q
    |||| |||||| || |||||||||||||| ||||||||||| ||   ||||||||||| | || |||| |||||||| |   ||  ||||||||| ||||    
T  31903424 atgacaataagtaagtatattgaaggactgatatgacaatactaatgaattattttaacgtcatggacaattttgactactgaaaagcacaatcagggac 31903325  T
Q  117 tattttgaaatttcgata 134  Q
    ||||||||||||| ||||    
T  31903324 tattttgaaattttgata 31903307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 36409658 - 36409711
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaat 76  Q
    |||||| || |||||||||||||||||||||||||||||  || ||||||||||    
T  36409658 aataagtaagtatattgaaggactaatatgacaatattaaccagttattttaat 36409711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 36423824 - 36423877
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaat 76  Q
    |||||| || |||||||||||||||||||||||||||||  || ||||||||||    
T  36423824 aataagtaagtatattgaaggactaatatgacaatattaaccagttattttaat 36423877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 179
Target Start/End: Complemental strand, 56095188 - 56095031
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattt 121  Q
    |||||| || |||||| || |||||||||||||||||||   |||||||||||||  ||||||||| ||||| |  |||||| | |||| |  |||||||    
T  56095188 aataagtaagtatattaaaagactaatatgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattt 56095089  T
Q  122 tgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    | |||||| |||||| ||| | || | || |  ||||| |||||||| ||||||||||    
T  56095088 taaaattttgatacattgagggactactagggttacttcttacacattcagggaccaa 56095031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 48973336 - 48973448
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggac 116  Q
    |||| |||||| || |||||||||||||||||||||||||||||   ||  |||||||   || | ||||||||||  ||  || ||||||||| |||||    
T  48973336 atgacaataagtaagtatattgaaggactaatatgacaatattaatgaagcattttaacatcaagaactattttgattaatgaattgcacaatcaaggac 48973435  T
Q  117 tattttgaaattt 129  Q
    |||||||||||||    
T  48973436 tattttgaaattt 48973448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 8170807 - 8170760
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatc-aggactattttgaaattt 129  Q
    |||||||||||| |||||||||||||||| | ||||||||||||||||    
T  8170807 gactattttgactaacaaagtgcacaatcaaagactattttgaaattt 8170760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 46804880 - 46804809
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgataca 136  Q
    ||||||||  || ||| |||||||||||| ||||||||| |||||||| ||||||||| |||||| ||||||    
T  46804880 attatttttgtgtcagagactattttgactaacaaagtgtacaatcagagactattttaaaattttgataca 46804809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 179
Target Start/End: Original strand, 56095201 - 56095296
Alignment:
Q  85 ctattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    |||||||||| ||||||||||| |||||| ||| ||||| ||||||  |||||||||   || ||| |||||||| |||||||||  |||||||||    
T  56095201 ctattttgactaacaaagtgcaaaatcagagacaattttaaaattttaatacaatgagatactattgtgactactcgttacacattaagggaccaa 56095296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 26499409 - 26499479
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagt 103  Q
    ||||||||| |||||||||||||||||||   || ||||||||||  | ||||||||||||| ||| ||||    
T  26499409 tatattgaatgactaatatgacaatattaatgaagtattttaatgttacggactattttgactaacgaagt 26499479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Complemental strand, 27146386 - 27146320
Alignment:
Q  93 accaacaaagtgcacaatc-aggactattttgaaatttcgatacaatgaagaaccattatgactact 158  Q
    ||||||||||||||||||| ||||||||||| ||||||  ||||| ||| |||| || |||||||||    
T  27146386 accaacaaagtgcacaatcgaggactattttaaaattttaatacattgatgaactatcatgactact 27146320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 191
Target Start/End: Original strand, 40317745 - 40317871
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    |||||||||| | ||| |||||||||||  ||||||||| |||||| ||||||||||| ||| ||  ||||| ||| |||| ||| |||| | |  ||||    
T  40317745 attattttaacgtcagagactattttgattaacaaagtgtacaatcaaggactattttaaaaattttatacattgatgaactattgtgacaattcattac 40317844  T
Q  165 acatccagggaccaacatgactattag 191  Q
    |||| || ||| ||| |||||||||||    
T  40317845 acattcatggatcaaaatgactattag 40317871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 66 - 191
Target Start/End: Original strand, 40327819 - 40327945
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    |||||||||| | ||| |||||||||||  ||||||||| |||||| ||||||||||| ||| ||  ||||| ||| |||| ||| |||| | |  ||||    
T  40327819 attattttaacgtcagagactattttgattaacaaagtgtacaatcaaggactattttaaaaattttatacattgatgaactattgtgacaattcattac 40327918  T
Q  165 acatccagggaccaacatgactattag 191  Q
    |||| || ||| ||| |||||||||||    
T  40327919 acattcatggatcaaaatgactattag 40327945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 312709 - 312770
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgac 94  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||  |||||||||||||||    
T  312709 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgac 312770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 4161831 - 4161908
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaat 110  Q
    |||||||||| ||||||||||||||||||   ||  ||||||||  ||  |||||||||||| |||||| ||||||||    
T  4161831 tatattgaagaactaatatgacaatattaatgaaacattttaatatcatagactattttgactaacaaaatgcacaat 4161908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 11358571 - 11358503
Alignment:
Q  68 tattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgataca 136  Q
    |||||||| | ||| |||||||||||| ||| ||||||||||||| ||| ||||||| ||||||||||||    
T  11358571 tattttaacgtcagagactattttgactaacgaagtgcacaatcatggattattttg-aatttcgataca 11358503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Original strand, 17884017 - 17884058
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgtttt 272  Q
    |||||||||| || ||||||||||||||||||| ||||||||    
T  17884017 gctatttctataacaaaagataaaataaagttaaattgtttt 17884058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 31903482 - 31903591
Alignment:
Q  82 ggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaac 180  Q
    ||||||||||||  |||||||||||| ||||| |||||||||| ||||| |||||  ||| | || ||| | |||| | ||||||||| ||| ||||||     
T  31903482 ggactattttgattaacaaagtgcacgatcagagactattttggaattttgatacgttgagggactattgtaactattcgttacacattcagagaccaaa 31903581  T
Q  181 atgactatta 190  Q
    ||||| ||||    
T  31903582 atgaccatta 31903591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 40407576 - 40407732
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattt 121  Q
    |||||| ||||||||| || ||  ||||||| |||||||   |||||||||||||  |  | | |||||||| | |||| ||||||||| | ||||||||    
T  40407576 aataagtaattatattaaaagatcaatatgataatattaacaaattattttaatgttaatggcaattttgactagcaaa-tgcacaatcaatgactattt 40407674  T
Q  122 tgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    | |||||| |||||| ||||| || ||||||  ||||  |||||||| ||||||||||    
T  40407675 taaaattttgatacattgaaggactattatggttactccttacacattcagggaccaa 40407732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 6552535 - 6552615
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag 113  Q
    ||||||||||||||||| ||||||||| |   || ||||| ||||  ||||||||||||||| ||  ||||| ||||||||    
T  6552535 tatattgaaggactaatgtgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatcag 6552615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 11358685 - 11358749
Alignment:
Q  82 ggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaac 145  Q
    ||||||||||||| |||| | |||||||| | ||||||| |||||||||| ||||| ||||||||    
T  11358685 ggactattttgactaacatattgcacaataatggactatattgaaatttcaatacattgaagaac 11358749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 51151016 - 51151127
Alignment:
Q  80 agggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatga-agaaccattatgactacttgttacacatccagggacc 177  Q
    |||||||||||||||||||| |||| | |||||| ||||||||| ||||||  ||||| ||| |||   ||| |||||||| ||||||||| || |||||    
T  51151016 agggactattttgaccaacagagtg-aaaatcagagactattttaaaattttaatacattgagagatttattgtgactactcgttacacattcaaggacc 51151114  T
Q  178 aacatgactatta 190  Q
    || || |||||||    
T  51151115 aaaataactatta 51151127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 8206226 - 8206399
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggac 116  Q
    |||| |||||| || |||||||||||| ||||||||||||||||   |||||||||  || || ||||||||||||| ||  ||||||||| ||| ||||    
T  8206226 atgataataagtaagtatattgaaggattaatatgacaatattaatgaattattttgttgtcaaggactattttgactaatgaagtgcacattcagggac 8206325  T
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    |||| | ||||||||||||| | ||| || || |||||||||| |||||||| ||  || ||| ||||||||||    
T  8206326 tattataaaatttcgatacattaaaggactatcatgactacttattacacattcaatgatcaaaatgactatta 8206399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 917106 - 917264
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcg 131  Q
    ||||||||| |||||||||||||||||||   || ||||||| ||  || |||||||||||  || |||||| |||||||  ||||||||| ||||||||    
T  917106 tatattgaatgactaatatgacaatattaacaaaatattttattgtgagagactattttgataaataaagtgtacaatcaaagactattttaaaatttcg 917205  T
Q  132 atacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||| ||| | || ||| |||||| |  |||||||| |||| ||||| ||||||||||    
T  917206 atacattgagggacgattgtgactaatatttacacattcaggaaccaaaatgactatta 917264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 6217590 - 6217749
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaa-tgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttc 130  Q
    |||||| ||||||||||||||||||| ||  | | |||||||| || ||  |||||||||||| ||| ||||||| ||||| |||||||||||||||||     
T  6217590 tatattaaaggactaatatgacaatactaacctaatattttaaatgtcaaagactattttgactaacgaagtgcataatcatggactattttgaaatttt 6217689  T
Q  131 gatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    |||||| ||| | || ||| || ||| | | ||||||| || ||||||| ||||||||||    
T  6217690 gatacattgagggactattgtggctattcgctacacattcatggaccaaaatgactatta 6217749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 168
Target Start/End: Complemental strand, 7756516 - 7756429
Alignment:
Q  82 ggactattttgaccaacaaagtgcacaatcagg-actattttgaaatttcgatacaatgaagaaccattatgactacttgttacacat 168  Q
    ||||||||||||| |||||||| |||||| ||| |||| |||  |||||||||||||| ||| |||||| ||||||||| ||||||||    
T  7756516 ggactattttgactaacaaagttcacaataagggactaatttataatttcgatacaatcaaggaccattctgactacttcttacacat 7756429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 113
Target Start/End: Original strand, 9023366 - 9023446
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag 113  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||  ||||||||||||||| || |||||| ||||||||    
T  9023366 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaataaagtgtacaatcag 9023446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 46 - 185
Target Start/End: Original strand, 32270607 - 32270747
Alignment:
Q  46 taatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaa 144  Q
    ||||||||||||||||   || || ||||| |  ||||||||||||||| |||| |  |||||||||  || |||||||||||||||||||| |||  ||    
T  32270607 taatatgacaatattaacgaaatactttaacgtaagggactattttgactaacatatcgcacaatcatagattattttgaaatttcgatacattgagaaa 32270706  T
Q  145 ccattatgactacttgttacacatccagggaccaacatgac 185  Q
      ||||||| |||| |||||| || |||||||||| |||||    
T  32270707 ttattatgattactcgttacatattcagggaccaagatgac 32270747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 124
Target Start/End: Complemental strand, 39194954 - 39194866
Alignment:
Q  37 ttgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttga 124  Q
    ||||| || ||||||||||||||||   ||  ||||||||| ||| |||||||||||| |||||||||||||||| | |||||||||||    
T  39194954 ttgaatgattaatatgacaatattaacgaaacattttaatggcagtgactattttgactaacaaagtgcacaatcaatgactattttga 39194866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 16127155 - 16127050
Alignment:
Q  86 tattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatga 184  Q
    ||||||||| |||||| | |||||||| ||||||||||||||||| |||||  |||   || ||| ||||||||  ||||||||  ||||||||| ||||    
T  16127155 tattttgactaacaaactacacaatcaaggactattttgaaattttgatactttgagagactattgtgactactccttacacatttagggaccaaaatga 16127056  T
Q  185 ctatta 190  Q
    ||||||    
T  16127055 ctatta 16127050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 6582953 - 6582893
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    ||||||||||||| ||||| |||||| |||||| ||| |||||||| ||||||||| ||||    
T  6582953 gctatttctacaacaaaagctaaaatgaagttaaatttttttcttataagttataaactgt 6582893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 14468877 - 14468770
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaaca 181  Q
    |||||||||||  |||| |||||||||| | |||||||||||||||||||||||| ||| | || ||| |  ||| | |||||| || || |||||||||    
T  14468877 gactattttgattaacatagtgcacaattaaggactattttgaaatttcgatacattgatg-actattgtagctattcgttacatattcaaggaccaaca 14468779  T
Q  182 tgactatta 190  Q
    |||||||||    
T  14468778 tgactatta 14468770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 10363694 - 10363741
Alignment:
Q  226 gctatgctatttctacaataaaagataaaataaagttagattgttttc 273  Q
    |||| |||||||||| || ||||||||||||||||||| |||||||||    
T  10363694 gctaagctatttctataacaaaagataaaataaagttaaattgttttc 10363741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 12425533 - 12425580
Alignment:
Q  244 taaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||||||||||||| ||||||||| || ||| ||||||||||    
T  12425533 taaaagataaaataaagttaaattgttttcgtataagctataagctgt 12425580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 16945102 - 16945046
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagct 289  Q
    ||||||||||||| ||||||||||||  ||||| ||||||||| |||||| ||||||||    
T  16945102 gctatttctacaagaaaagataaaat--agttaaattgttttcatagaagctataagct 16945046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 4014545 - 4014504
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgtttt 272  Q
    |||||||||| |  ||||||||||||||||||||||||||||    
T  4014545 gctatttctatagcaaaagataaaataaagttagattgtttt 4014504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 179
Target Start/End: Original strand, 11497964 - 11498121
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattt 121  Q
    |||||| || |||||| || || ||||||||||||||||   |||||||||||||  ||||||||| ||||| |  |||||| | |||| |  |||||||    
T  11497964 aataagtaagtatattaaaagattaatatgacaatattaacaaattattttaatgttagggactatgttgactagaaaagtgaataatcaaatactattt 11498063  T
Q  122 tgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaa 179  Q
    | |||||| |||||| ||| | || | || |  ||||| |||||||| ||||||||||    
T  11498064 taaaattttgatacattgagggactactagggttacttcttacacattcagggaccaa 11498121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 286
Target Start/End: Original strand, 11835240 - 11835281
Alignment:
Q  245 aaaagataaaataaagttagattgttttcttagaagttataa 286  Q
    ||||||||||||||||||| ||||||||| | ||||||||||    
T  11835240 aaaagataaaataaagttaaattgttttcgttgaagttataa 11835281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 14460085 - 14460126
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatat 59  Q
    |||| |||||| || |||||||||||||||||||||||||||    
T  14460085 atgacaataagtaaatatattgaaggactaatatgacaatat 14460126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Complemental strand, 5963402 - 5963362
Alignment:
Q  232 ctatttctacaataaaagataaaataaagttagattgtttt 272  Q
    ||||||||| ||| |||||||||||||||||| ||||||||    
T  5963402 ctatttctataatgaaagataaaataaagttaaattgtttt 5963362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 14295455 - 14295515
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| || ||||||||||||||||| | | ||||||| || ||| ||||||||||    
T  14295455 gctatttctataacaaaagataaaataaagtcaaactgttttcatataagctataagctgt 14295515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 3e-21; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 5362402 - 5362298
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcg 131  Q
    |||||||||||||||||||||| ||||||   || |||||||||  |||||||||||||||| |||||| | |||||||| | |||||||||||||||||    
T  5362402 tatattgaaggactaatatgaccatattaacgaagtattttaatatcagggactattttgactaacaaattacacaatcatgaactattttgaaatttcg 5362303  T
Q  132 ataca 136  Q
    |||||    
T  5362302 ataca 5362298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 32996395 - 32996259
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcg 131  Q
    |||||||||||||||||||||||||||||   ||||| ||||||   || ||||||||| || ||  ||||| |||||||| ||||||||| ||||||||    
T  32996395 tatattgaaggactaatatgacaatattaacaaattaatttaatattagagactattttaacaaatgaagtgtacaatcagagactatttttaaatttcg 32996296  T
Q  132 atacaatgaagaaccattatgactacttgttacacat 168  Q
    ||||| ||||| | |||||| |||| || ||||||||    
T  32996295 atacattgaaggatcattataactatttattacacat 32996259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 23 - 136
Target Start/End: Complemental strand, 39608483 - 39608369
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattt 121  Q
    |||||| || |||| |||| |||||||||||||||||||  ||| ||||||||||  ||  |||||||| || ||| |||||||| ||| | || |||||    
T  39608483 aataagtaagtatactgaatgactaatatgacaatattaatcaagtattttaatgtaagtaactattttaactaacgaagtgcacgatcaatgattattt 39608384  T
Q  122 tgaaatttcgataca 136  Q
    |||||||||||||||    
T  39608383 tgaaatttcgataca 39608369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 190
Target Start/End: Original strand, 40355018 - 40355176
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcg 131  Q
    ||||| |||| ||||||||||||||||||   || | ||||||||  |  |||||||||||| |||| ||||||||||||| ||||||||| ||||||||    
T  40355018 tatatagaagaactaatatgacaatattaatgaagtgttttaatgtaaatgactattttgactaacatagtgcacaatcagagactattttcaaatttcg 40355117  T
Q  132 atacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
     ||   ||||  || ||||  |||||| ||||||||| ||  |||||| ||||||||||    
T  40355118 gtatgttgaacgactattacaactactcgttacacattcaaagaccaaaatgactatta 40355176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 120
Target Start/End: Complemental strand, 12927729 - 12927643
Alignment:
Q  35 tattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactatt 120  Q
    |||||||| ||||| ||||||||||||   || |||||||||   | ||||||||||||| |||||||||||||||| |||||||||    
T  12927729 tattgaagaactaacatgacaatattaacaaaatattttaatatgaaggactattttgactaacaaagtgcacaatcaaggactatt 12927643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 8062849 - 8062776
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgca 106  Q
    |||||| || |||||||||||||||||||   |||||||||||||  | ||||||||||||| | |||||||||    
T  8062849 tatattaaaagactaatatgacaatattaacaaattattttaatgttatggactattttgactagcaaagtgca 8062776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 229 - 290
Target Start/End: Complemental strand, 12835060 - 12834999
Alignment:
Q  229 atgctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctg 290  Q
    ||||||||||||||| ||||||||||||||||| | ||||||||| ||  || |||||||||    
T  12835060 atgctatttctacaacaaaagataaaataaagtcaaattgttttcatattagctataagctg 12834999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 186
Target Start/End: Complemental strand, 14669342 - 14669237
Alignment:
Q  82 ggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaac 180  Q
    ||||||||||||| |||| ||||||||||||| ||||||||||| ||||||||  | ||| | |   || |||||||| ||||||||| || |||||||     
T  14669342 ggactattttgactaacatagtgcacaatcagagactattttgatatttcgattaattgagggattgttgtgactactcgttacacattcaaggaccaaa 14669243  T
Q  181 atgact 186  Q
    ||||||    
T  14669242 atgact 14669237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 34703796 - 34703629
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatatt-acacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactatt 120  Q
    |||||| || |||| |||| |||||||||||||||||| ||| || |||||||| |  || ||||||||||| |||| ||||| ||||| || |||||||    
T  34703796 aataagtaagtatactgaaagactaatatgacaatattgaca-aaatattttaaagttagagactattttgatcaacgaagtgaacaattagagactatt 34703698  T
Q  121 ttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    || |||||| |||||| ||| | || ||| |||||||| |||| ||||  | ||| ||| ||||||||||    
T  34703697 ttaaaattt-gatacattgatggactattgtgactactcgttatacatttatggatcaaaatgactatta 34703629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 38838623 - 38838526
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggactattttgaaattt 129  Q
    |||||| || |||||| |||| |||||||   ||||||||||||   ||||||||||||||| |  ||||||||||||| ||||||||||| ||||||    
T  38838623 tatattaaaagactaacatgataatattaacaaattattttaatattagggactattttgactagaaaagtgcacaatcaaggactattttaaaattt 38838526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 136
Target Start/End: Complemental strand, 10228858 - 10228754
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcg 131  Q
    ||||||||||||||||||||  ||| |||   ||  ||||||| | ||  |||||||||||| ||| || ||||||||||  ||||||||||||||||||    
T  10228858 tatattgaaggactaatatgtaaattttaacaaaacattttaaggtcaaagactattttgactaacgaattgcacaatcaaagactattttgaaatttcg 10228759  T
Q  132 ataca 136  Q
    |||||    
T  10228758 ataca 10228754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 287
Target Start/End: Complemental strand, 30456571 - 30456515
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataag 287  Q
    |||||||||| || ||||||||||||||||| | ||||||||| || ||||||||||    
T  30456571 gctatttctaaaacaaaagataaaataaagtcaaattgttttcatataagttataag 30456515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 190
Target Start/End: Original strand, 46720016 - 46720123
Alignment:
Q  84 actattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacat 182  Q
    ||||||||||| |||||||||||||||| |  || ||||| ||||||| ||||| ||| | || ||| |||||||||||||  ||| |||| ||||  ||    
T  46720016 actattttgactaacaaagtgcacaatcaaataccattttaaaatttcaatacattgagggactattgtgactacttgttattcattcaggaaccataat 46720115  T
Q  183 gactatta 190  Q
    ||||||||    
T  46720116 gactatta 46720123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 12849716 - 12849770
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgataca 136  Q
    |||||||| ||| |||||||||||||||||| |||||||||| ||||| ||||||    
T  12849716 gactatttcgactaacaaagtgcacaatcagagactattttgtaattttgataca 12849770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 23457814 - 23457888
Alignment:
Q  84 actattttgaccaacaaagtgcacaatcagga-ctattttgaaatttcgatacaatgaagaaccattatgactac 157  Q
    ||||||||||  |||||||||||||||||  | ||||||| ||||||||||||| ||||| || |||||| ||||    
T  23457814 actattttgattaacaaagtgcacaatcaataactattttaaaatttcgatacattgaaggactattatggctac 23457888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 30180014 - 30180060
Alignment:
Q  245 aaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    ||||||||||||||||||| ||||||||| || ||| ||||||||||    
T  30180014 aaaagataaaataaagttaaattgttttcgtataagctataagctgt 30180060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 231 - 289
Target Start/End: Original strand, 35536056 - 35536114
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagct 289  Q
    |||||||||| || | ||||||||||||||| | ||||||||| || ||||||||||||    
T  35536056 gctatttctataacataagataaaataaagtcaaattgttttcatataagttataagct 35536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 272
Target Start/End: Complemental strand, 43153023 - 43152982
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgtttt 272  Q
    |||||||||| || ||||||||||||||||||| ||||||||    
T  43153023 gctatttctataacaaaagataaaataaagttaaattgtttt 43152982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 271
Target Start/End: Original strand, 119859 - 119899
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttt 271  Q
    ||||||||||||  ||||||||||||||||||| |||||||    
T  119859 gctatttctacaggaaaagataaaataaagttaaattgttt 119899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 3802260 - 3802200
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| |||||||| ||||||||||| | || |||||| || || |||||||||||    
T  3802260 gctatttctataataaaaggtaaaataaagtcaaatcgttttcatataaattataagctgt 3802200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 6824867 - 6824927
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| || |||||||| || ||||||| ||||||||  || ||||||||||||||    
T  6824867 gctatttctataacaaaagatagaacaaagttaaattgttttagtacaagttataagctgt 6824927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 40689107 - 40689047
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||| |  ||||||||||||||||||| ||| ||||| || ||| ||||||||||    
T  40689107 gctatttctatagcaaaagataaaataaagttaaattattttcatataagctataagctgt 40689047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 40124432 - 40124264
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattt 121  Q
    |||||| || ||||||||||| |||||||||||||||||   || || |||||||  | ||||||||||||| |||  ||||||||||||| ||| ||||    
T  40124432 aataagtaagtatattgaagggctaatatgacaatattaatgaagtactttaatgttatggactattttgactaacggagtgcacaatcagagaccattt 40124333  T
Q  122 tgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    | ||||||||||||| | | | || ||| |||||||| ||||||||| || |||||||  |||||||||    
T  40124332 taaaatttcgatacattaatggactattgtgactactcgttacacattcaaggaccaaagtgactatta 40124264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 15301520 - 15301638
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gac 116  Q
    |||| |||||| || |||||||||| ||||||| ||||||||||   || |||||||||| ||| ||||||||||| | | ||| ||||||||||| ||     
T  15301520 atgataataagtaagtatattgaagtactaataagacaatattaacgaagtattttaatgtcagagactattttga-ctagaaaatgcacaatcagagat 15301618  T
Q  117 tattttgaaatttcgataca 136  Q
    ||||||||||||||||||||    
T  15301619 tattttgaaatttcgataca 15301638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 7165732 - 7165643
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca 112  Q
    |||||| || ||||||||| ||||||||||| |||||||   |||||||||||||  | ||||||||||||| || ||||||||||||||    
T  7165732 aataagtaagtatattgaaagactaatatgaaaatattaacaaattattttaatgttaaggactattttgactaataaagtgcacaatca 7165643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 6788484 - 6788570
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcagga-ctattttgaaatttcgatacaatgaagaaccattatgactacttgttacacat 168  Q
    ||||||| |||| |||||||||||||||||| | ||||||| |||||| |||||| ||||  || |||||||||| |||||||||||    
T  6788484 gactattctgactaacaaagtgcacaatcagaaactattttaaaattttgatacattgaatgactattatgactatttgttacacat 6788570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 190
Target Start/End: Original strand, 20167573 - 20167698
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    |||||||||||| ||| |||||||||| | ||||||||| ||||||| ||| ||||||| ||||| ||| || |||   || ||| ||||||||||||||    
T  20167573 attattttaatgtcagagactattttgtctaacaaagtgtacaatcagggaatattttgcaattttgatgcattgagtgactattgtgactacttgttac 20167672  T
Q  165 acatccagggaccaacatgactatta 190  Q
    ||||  |  |||||| ||||||||||    
T  20167673 acatttaaagaccaaaatgactatta 20167698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 21603674 - 21603753
Alignment:
Q  82 ggactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgatacaatgaagaaccattatgactacttg 160  Q
    ||||||||||||| ||||||||| |||||| |||||||||||||||||| |||||   |||| || ||| ||||||||||    
T  21603674 ggactattttgactaacaaagtggacaatcaaggactattttgaaattttgatacgtcgaaggactattgtgactacttg 21603753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 287
Target Start/End: Original strand, 29300591 - 29300650
Alignment:
Q  228 tatgctatttctacaataaaagataaaataaagttagattgttttcttagaagttataag 287  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||| |  ||||||||||    
T  29300591 tatgctatttctacaataaaagataaaataaaggtgaattgttttcatgtaagttataag 29300650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Complemental strand, 6788393 - 6788276
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcaggact 117  Q
    |||| |||||| || ||||||||| ||||| |||||||||||||   ||||||||||||| ||  || ||||||||| ||  || |||||||| | || |    
T  6788393 atgataataagtaagtatattgaatgactagtatgacaatattaacaaattattttaatgtcattgattattttgactaatgaaatgcacaatta-gatt 6788295  T
Q  118 attttgaaatttcgataca 136  Q
    |||||||||||| ||||||    
T  6788294 attttgaaattttgataca 6788276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 291
Target Start/End: Original strand, 15377732 - 15377774
Alignment:
Q  249 gataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    ||||||||||||||||||||||||| || ||||||||||||||    
T  15377732 gataaaataaagttagattgttttcatataagttataagctgt 15377774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 291
Target Start/End: Original strand, 18066077 - 18066137
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    |||||||||||| ||||| || ||||||||||| ||||||||| || ||| ||||||||||    
T  18066077 gctatttctacagtaaaatatgaaataaagttaaattgttttcatataagctataagctgt 18066137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 31967526 - 31967446
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag 113  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||  ||||||||||||||| ||  ||||| ||||||||    
T  31967526 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatcag 31967446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 15816948 - 15816905
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatatta 61  Q
    ||||||||||| || ||| |||||||||||||||||||||||||    
T  15816948 atgaaaataagtaagtatcttgaaggactaatatgacaatatta 15816905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 3673758 - 3673812
Alignment:
Q  233 tatttctacaataaaagataaaataaagttagattgttttcttagaagttataag 287  Q
    |||||||| || |||| |||||||||||||| ||||||||| || ||||||||||    
T  3673758 tatttctataacaaaatataaaataaagttaaattgttttcatataagttataag 3673812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 141
Target Start/End: Complemental strand, 18903051 - 18902989
Alignment:
Q  79 cagggactattttgaccaacaaagtgcacaatcaggactattttgaaatttcgatacaatgaa 141  Q
    ||||||||||||||||||||| ||  ||||||||| ||||||||  ||||||| |||| ||||    
T  18903051 cagggactattttgaccaacacagcacacaatcagtactattttagaatttcggtacattgaa 18902989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 21603567 - 21603493
Alignment:
Q  35 tattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaa 109  Q
    |||||||| ||||| ||||||||||||   || |||||||||  ||  |||||||||||| ||||||||||||||    
T  21603567 tattgaagaactaacatgacaatattaacgaaatattttaatatcaaagactattttgactaacaaagtgcacaa 21603493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 276
Target Start/End: Original strand, 914031 - 914075
Alignment:
Q  232 ctatttctacaataaaagataaaataaagttagattgttttctta 276  Q
    ||||||||| || ||||||||||||||| || |||||||||||||    
T  914031 ctatttctataacaaaagataaaataaaatttgattgttttctta 914075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 41746484 - 41746424
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttga 93  Q
    ||||||||||| |||||||||||||||||   || ||||||||||  || |||||||||||    
T  41746484 tatattgaagggctaatatgacaatattaatgaagtattttaatgttagagactattttga 41746424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 42457898 - 42457938
Alignment:
Q  232 ctatttctacaataaaagataaaataaagttagattgtttt 272  Q
    ||||||||| | |||||||||||||||||||| ||||||||    
T  42457898 ctatttctatagtaaaagataaaataaagttaaattgtttt 42457938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 6541177 - 6541006
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc-aggac 116  Q
    |||| |||||| || |||||||||||||||||||||||||||||   || |||||||||| ||  || ||  ||||| ||||||| | |||||| |||||    
T  6541177 atgacaataagtaagtatattgaaggactaatatgacaatattaacgaaatattttaatgtcaaagatta--ttgactaacaaagagaacaatcaaggac 6541080  T
Q  117 tattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||| ||||||| |||||| | ||| || |||||||||| | ||||||||| ||||||  || ||||||||||    
T  6541079 tatttggaaattttgatacattaaaggactattatgactattcgttacacattcagggattaaaatgactatta 6541006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 33747424 - 33747291
Alignment:
Q  36 attgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcagg-actattttgaaatttcgata 134  Q
    |||||| |||||||||||||||||||    |  ||||||||  ||| |||||||||||| ||| ||||||| |||||   ||| ||||||||||||||||    
T  33747424 attgaacgactaatatgacaatattaatggagcattttaatatcagagactattttgactaacgaagtgcagaatcaaatactgttttgaaatttcgata 33747325  T
Q  135 caatgaagaaccattatgactacttgttacacat 168  Q
    || |||||||| ||| ||||||||||||||||||    
T  33747324 cattgaagaactattgtgactacttgttacacat 33747291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 27463840 - 27463959
Alignment:
Q  18 atgaaaataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gac 116  Q
    |||| |||||| || ||||||||| ||||||||| |||||||||   || |||||||| |  ||| ||||||||| | ||| |||||||||| ||| |||    
T  27463840 atgacaataagtaagtatattgaaagactaatataacaatattaacaaagtattttaacgttaggaactattttgtctaacgaagtgcacaaccagagac 27463939  T
Q  117 tattttgaaatttcgataca 136  Q
    ||||||||||||| ||||||    
T  27463940 tattttgaaattttgataca 27463959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 80 - 190
Target Start/End: Original strand, 32669975 - 32670086
Alignment:
Q  80 agggactattttgaccaacaaagtgcacaatcagg-actattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggacca 178  Q
    ||||||||||||| | |||| ||||||||||| || || | |||||||||||||| || ||||| || ||| ||| |||| ||||||||| |||||| ||    
T  32669975 agggactattttgcctaacatagtgcacaatccgggacaagtttgaaatttcgatccattgaaggactattgtgaatactcgttacacattcagggatca 32670074  T
Q  179 acatgactatta 190  Q
    | ||||||||||    
T  32670075 aaatgactatta 32670086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 44 - 190
Target Start/End: Original strand, 34177444 - 34177591
Alignment:
Q  44 actaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaag 142  Q
    |||||| ||| |||||||  |||  |||||||||  || |||||||||||| |||| | |||||||||| |||||||||||||||||| |  || |||||    
T  34177444 actaatgtgaaaatattaaccaaacattttaatgtaagagactattttgactaacataatgcacaatcatggactattttgaaatttcaaatcattgaag 34177543  T
Q  143 aaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
     || ||| |  |||||  |||||||| |||||||||| ||||||||||    
T  34177544 gactattgtagctactcattacacattcagggaccaaaatgactatta 34177591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 31517861 - 31517799
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgtct 293  Q
    ||||||||||||| ||||||||||||||||||| |||| |||| || ||| ||||||||||||    
T  31517861 gctatttctacaacaaaagataaaataaagttaaattgatttcatataagctataagctgtct 31517799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 5529808 - 5529952
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatca-ggactattt 121  Q
    |||||| || |||||| ||| ||||||| ||||||||||   || |||||||||| |||  ||||||||||| ||||||||||| ||| | ||| |||||    
T  5529808 aataagtaagtatatttaagtactaataagacaatattaacgaagtattttaatgtcagaaactattttgactaacaaagtgcataattagggattattt 5529907  T
Q  122 tgaaatttcgatacaatgaagaaccattatgactacttgttacac 166  Q
    | |||||| |||| | | ||| |  |||||||||||| |||||||    
T  5529908 taaaattttgatatattaaaggattattatgactactcgttacac 5529952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 136
Target Start/End: Original strand, 30050542 - 30050646
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcg 131  Q
    |||||||||||  ||||||| ||||||||   |  ||||||||||  || |||||||||||| |||||| |||| |||||  ||||||||||||||||||    
T  30050542 tatattgaagggttaatatgtcaatattaacgagatattttaatgtgagagactattttgactaacaaattgcataatcatagactattttgaaatttcg 30050641  T
Q  132 ataca 136  Q
    |||||    
T  30050642 ataca 30050646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 83 - 185
Target Start/End: Complemental strand, 30519146 - 30519042
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattat-gactacttgttacacatccagggaccaac 180  Q
    ||||||||||||  | |||||| |||||||| ||||||||||||||||||||||| | ||| || ||| | ||||| ||||||||||| || |||||||     
T  30519146 gactattttgacatataaagtgtacaatcagagactattttgaaatttcgatacatttaaggactattgtggactatttgttacacattcaaggaccaaa 30519047  T
Q  181 atgac 185  Q
    |||||    
T  30519046 atgac 30519042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 19464340 - 19464237
Alignment:
Q  66 attattttaatgacagggactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttac 164  Q
    ||||||||| || ||| |||||||||||| |||  ||||  ||||||| ||| ||||| |||||| |||||| ||||| || ||| ||||||||||||||    
T  19464340 attattttagtgtcagagactattttgactaacggagtgttcaatcagagaccatttttaaattttgatacattgaaggactattgtgactacttgttac 19464241  T
Q  165 acat 168  Q
    ||||    
T  19464240 acat 19464237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 6727994 - 6728100
Alignment:
Q  83 gactattttgaccaacaaagtgcacaat-caggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaaca 181  Q
    |||||||||||| |||| ||||||||||  | |||||||||| ||||| ||| || ||||| || ||| |||||| | ||||||||| ||||||| || |    
T  6727994 gactattttgactaacatagtgcacaatggaagactattttggaattttgattcattgaaggactattgtgactattcgttacacattcagggacgaaaa 6728093  T
Q  182 tgactat 188  Q
    |||||||    
T  6728094 tgactat 6728100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 83 - 188
Target Start/End: Original strand, 35684887 - 35684993
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaaca 181  Q
    |||||||||||| ||| || |||||||||| |||||||||||| |||| |||||| ||||| || ||| | ||||||  || ||||| ||||||||||      
T  35684887 gactattttgactaacgaactgcacaatcatggactattttgagattttgatacattgaaggactattgtaactactcattgcacattcagggaccaaag 35684986  T
Q  182 tgactat 188  Q
    |||||||    
T  35684987 tgactat 35684993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 113
Target Start/End: Original strand, 49880167 - 49880257
Alignment:
Q  23 aataagcaattatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag 113  Q
    |||||| || ||||||||| ||||||||||||||||| |   || ||||||||||  ||||||||||||||| ||  ||||| ||||||||    
T  49880167 aataagtaagtatattgaaagactaatatgacaatatcaatgaagtattttaatgttagggactattttgactaatgaagtgtacaatcag 49880257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 276
Target Start/End: Original strand, 8852809 - 8852854
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttctta 276  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  8852809 gctatttttacaacaaaagataaaataaagttatattgttttctta 8852854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 79 - 189
Target Start/End: Complemental strand, 34177389 - 34177278
Alignment:
Q  79 cagggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggacc 177  Q
    ||||||||| |||||| |||||| || ||||||| ||||||||||||||||| |||| | ||||  || ||| || || || |||||| || |||||||     
T  34177389 cagggactaatttgactaacaaaatggacaatcaaggactattttgaaattttgatatattgaaagacgattgtggctcctcgttacatattcagggact 34177290  T
Q  178 aacatgactatt 189  Q
    || |||||||||    
T  34177289 aaaatgactatt 34177278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 16192262 - 16192328
Alignment:
Q  103 tgcacaatcagga-ctattttgaaatttcgatacaatgaagaaccattatgactacttgttacacat 168  Q
    ||||||||||| | ||||||| |||||| |||||| ||||| |  ||||||||||||||||||||||    
T  16192262 tgcacaatcagaaactattttaaaattttgatacattgaaggaatattatgactacttgttacacat 16192328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 2992092 - 2992132
Alignment:
Q  242 aataaaagataaaataaagttagattgttttcttagaagtt 282  Q
    ||||||||||||||||||||||||||| |||| || |||||    
T  2992092 aataaaagataaaataaagttagattgatttcatataagtt 2992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 8779060 - 8779008
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcag-gactattttgaaatttcgata 134  Q
    ||||||||| || ||||||||||||||||||  ||||||||||||||| ||||    
T  8779060 gactattttaactaacaaagtgcacaatcagaaactattttgaaattttgata 8779008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 9890678 - 9890650
Alignment:
Q  33 tatattgaaggactaatatgacaatatta 61  Q
    |||||||||||||||||||||||||||||    
T  9890678 tatattgaaggactaatatgacaatatta 9890650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 287
Target Start/End: Original strand, 29793731 - 29793787
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataag 287  Q
    ||||||||||||| ||||||||| |||||||||  |||||||| || ||| ||||||    
T  29793731 gctatttctacaacaaaagataacataaagttaagttgttttcgtataagctataag 29793787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 30050402 - 30050322
Alignment:
Q  89 tttgaccaacaaagtgcacaatcag-gactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacat 168  Q
    |||||| |||||| | ||||||||| ||||||||| |||||  |||||| |||||||  ||| |||||| |||||||||||    
T  30050402 tttgactaacaaaatacacaatcagagactattttaaaattatgatacattgaagaattattgtgactatttgttacacat 30050322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 39162514 - 39162406
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatcagga-ctattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaaca 181  Q
    |||||||||||| |||| | ||| ||||||  | ||||||||||||||| ||||| ||||| || ||| ||| ||||  |||| ||| || ||||||| |    
T  39162514 gactattttgactaacataatgcgcaatcaaaaactattttgaaatttcaatacattgaagtactattgtgattactcattacgcattcaaggaccaaaa 39162415  T
Q  182 tgactatta 190  Q
    |||||||||    
T  39162414 tgactatta 39162406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 40304175 - 40304115
Alignment:
Q  231 gctatttctacaataaaagataaaataaagttagattgttttcttagaagttataagctgt 291  Q
    ||||||| || || ||||||||||||||| | | ||||||||| || ||||||||||||||    
T  40304175 gctatttatataacaaaagataaaataaaatcacattgttttcatataagttataagctgt 40304115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 263
Target Start/End: Original strand, 44251367 - 44251399
Alignment:
Q  231 gctatttctacaataaaagataaaataaagtta 263  Q
    |||||||||| ||||||||||||||||||||||    
T  44251367 gctatttctataataaaagataaaataaagtta 44251399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 51190824 - 51190868
Alignment:
Q  245 aaaagataaaataaagttagattgttttcttagaagttataagct 289  Q
    ||||||||||||||||||| ||||||||  || ||||||||||||    
T  51190824 aaaagataaaataaagttaaattgtttttgtataagttataagct 51190868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 189
Target Start/End: Complemental strand, 20691 - 20536
Alignment:
Q  35 tattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcagg-actattttgaaatttcgat 133  Q
    |||||||||||||||||||||||||||   || ||||||||| |||  |||||||||||| || ||| | |||||||||| ||||||||| ||||||||     
T  20691 tattgaaggactaatatgacaatattaatgaaatattttaataacaatgactattttgactaataaactacacaatcaggaactattttgcaatttcgac 20592  T
Q  134 acaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatt 189  Q
    ||| ||| | || ||||| |||||| || || ||| |||||| |||  ||||||||    
T  20591 acattgagggactattataactactcgtcactcattcagggatcaaagtgactatt 20536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0284 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0284
Description:

Target: scaffold0284; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 33 - 111
Target Start/End: Complemental strand, 2525 - 2447
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatc 111  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||  ||||||||||||||| ||  ||||| ||||||    
T  2525 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgactaatgaagtgtacaatc 2447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 81405 - 81347
Alignment:
Q  81 gggactattttgaccaacaaagtgcacaatca-ggactattttgaaatttcgatacaat 138  Q
    |||||||||||||| ||| |||||||||||||   |||||||||||||||| |||||||    
T  81405 gggactattttgactaacgaagtgcacaatcataaactattttgaaatttcaatacaat 81347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 190
Target Start/End: Original strand, 6470 - 6547
Alignment:
Q  113 ggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaacatgactatta 190  Q
    ||||||||||||||||| ||| || ||||| || |||||||||| |  |||||||| |||| || || ||||||||||    
T  6470 ggactattttgaaattttgattcattgaaggactattatgactattcattacacattcaggtactaaaatgactatta 6547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 6304 - 6196
Alignment:
Q  83 gactattttgaccaacaaagtgcacaatc-aggactattttgaaatttcgatacaatgaagaaccattatgactacttgttacacatccagggaccaaca 181  Q
    ||||||||||||||||  ||| ||||||| ||||||||||| |||||| |||||| ||| | || |||  ||||||| ||| |||||  || |||| | |    
T  6304 gactattttgaccaacggagttcacaatctaggactattttaaaattttgatacattgatggactattgggactactcgttgcacattgagagaccgaaa 6205  T
Q  182 tgactatta 190  Q
    |||||||||    
T  6204 tgactatta 6196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 35039 - 35100
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgac 94  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||  |||||||||||||||    
T  35039 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagggactattttgac 35100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 113
Target Start/End: Complemental strand, 20142 - 20062
Alignment:
Q  33 tatattgaaggactaatatgacaatattacacaattattttaatgacagggactattttgaccaacaaagtgcacaatcag 113  Q
    ||||||||||||||||||||||||||| |   || ||||| ||||  || |||||||||||| ||  ||||| ||||||||    
T  20142 tatattgaaggactaatatgacaatatcaatgaagtatttgaatgttagagactattttgactaatgaagtgtacaatcag 20062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University