View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1442_low_8 (Length: 364)
Name: NF1442_low_8
Description: NF1442
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1442_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 2 - 348
Target Start/End: Original strand, 33161541 - 33161888
Alignment:
| Q |
2 |
catcacctcaagaccgaaacgaaagagcataacaagtggaaaatcttggtcaaactgtcgactttctataaaacacattataagtcaaaactcatcatga |
101 |
Q |
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| T |
33161541 |
catcacctcaagaccgaaacgaaagagcataacaagtggaaaatcttggtcaaactgttgactttctataaaacacattataagtcaaaactcatcatga |
33161640 |
T |
|
| Q |
102 |
tctacctccagttagtgcttagcacacaatataatactataccaaaggaatccttaacacttgacaataacttaataagaaaatgcttaaaatcttcaca |
201 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161641 |
tctacctccacttagtgcttagcacacaatataatactataccaaaggaatccttaacacttgacaataacttaataagaaaatgcttaaaatcttcaca |
33161740 |
T |
|
| Q |
202 |
taaaaatggctaccttcgaagcttagtaaccataatcaaactcaaaatcaatctataacaaaccaataaacacattccta-ttttgtaacatgggttcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33161741 |
taaaaatggctaccttcgaagcttagtaaccataatcaaactcaaaatcaatctataacaaaccaataaacacattcctatttttgtaacatgggttcta |
33161840 |
T |
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| Q |
301 |
atattaaccctaatccaaaaaccctaaccaccaatttactcttcattt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33161841 |
atattaaccctaatccaaaaaccctaaccaccaatttactcttcattt |
33161888 |
T |
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