View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14430_high_3 (Length: 237)
Name: NF14430_high_3
Description: NF14430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14430_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 37814144 - 37813926
Alignment:
| Q |
1 |
atgcaacaaaatcacttgagaagaacttacaaaccaccaaactcaatgatcttgagttgcttaattttttatattttccaagctaatcgtaannnnnnnc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37814144 |
atgcaacaaaatcacttgagaagaacttacaaaccaccaaactcaatgatcttgagttgcttaattttttatattttccaagctaatcgtaatttttttc |
37814045 |
T |
|
| Q |
101 |
ttttctttcatataacgaacgctaaagttaaattaacaaaatgttgtttaggtttttgtttttctcacgtagccaagggtcaagggattacatccaaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37814044 |
ttttctttcatataacgaacgctaaagttaaattaacaaaatgttgtttaggtttttgtttttctcacgtagccaagggtcaagggattacatccaaaag |
37813945 |
T |
|
| Q |
201 |
aaatataggactggcatat |
219 |
Q |
| |
|
||||||||||||| ||||| |
|
|
| T |
37813944 |
aaatataggactgacatat |
37813926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 7731414 - 7731632
Alignment:
| Q |
1 |
atgcaacaaaatcacttgagaagaacttacaaaccaccaaactcaatgatcttgagttgcttaattttttatattttccaagctaatcgtaannnnnnnc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
7731414 |
atgcaacaaaatcacttgagaagaacttacaaaccaccaaactcaatgatctttagttgcttaattttttatattttctaagctaatcgtaatttttttc |
7731513 |
T |
|
| Q |
101 |
ttttctttcatataacgaacgctaaagttaaattaacaaaatgttgtttaggtttttgtttttctcacgtagccaagggtcaagggattacatccaaaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731514 |
ttttctttcatataacgaacgctaaagttaaattaacaaaatgttgtttaggtttttgtttttatcacgtagccaagggtcaagggattacatccaaaag |
7731613 |
T |
|
| Q |
201 |
aaatataggactggcatat |
219 |
Q |
| |
|
||||||||||| ||||||| |
|
|
| T |
7731614 |
aaatataggaccggcatat |
7731632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University