View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14430_low_2 (Length: 293)
Name: NF14430_low_2
Description: NF14430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14430_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 33506723 - 33506471
Alignment:
| Q |
18 |
catttgtctagtatcaaatatgaattcaaaattgtgctgaacatctatttcatactctttttgatccaggtctttttgttatttaatttgtatgtataat |
117 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
33506723 |
catttgtctagcatcaaatatgaattcaaaattgtgctgaatatctatttcatactcttttttatccaggtctttttgttatttaatttgtat----aat |
33506628 |
T |
|
| Q |
118 |
ttaagcatctagtccagatttaacaattgcatgacaccaattttcactcaattatttagttaacccaaattcattttaaaaatagatttaacaattgtat |
217 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33506627 |
ttaggcatctagtccagatttaacaattgtatgacaccaattttcactcaattatttagttaacccaaattcattttaaaaatagatttaacaattgtat |
33506528 |
T |
|
| Q |
218 |
tacccactattctttcgattctatgaattataccttcttaatgtcattaacaatttt |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33506527 |
tacccactattctttcgattctatgaattatactttcttaatgtcattaacaatttt |
33506471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 39298306 - 39298358
Alignment:
| Q |
34 |
aatatgaattcaaaattgtgctgaacatctatttcatactctttttgatccag |
86 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
39298306 |
aatatgaatttaaaattgtgctgaacatctatttcctactcgttttgatccag |
39298358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 68
Target Start/End: Original strand, 39295722 - 39295755
Alignment:
| Q |
35 |
atatgaattcaaaattgtgctgaacatctatttc |
68 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
39295722 |
atatgaattcaaaattgtgctcaacatctatttc |
39295755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University