View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14430_low_5 (Length: 224)
Name: NF14430_low_5
Description: NF14430
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14430_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 15941475 - 15941331
Alignment:
| Q |
11 |
agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15941475 |
agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat |
15941376 |
T |
|
| Q |
111 |
ataaactcacggcttgagttataacaaggtaggtagcaacacggc |
155 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15941375 |
atagactcacggcttgagttatagcaaggtaggtagcaacacggc |
15941331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 15933133 - 15932993
Alignment:
| Q |
11 |
agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15933133 |
agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat |
15933034 |
T |
|
| Q |
111 |
ataaactcacggcttgagttataacaaggtaggtagcaaca |
151 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15933033 |
atagactcacggcttgagttatagcaaggtaggtagcaaca |
15932993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 34657565 - 34657421
Alignment:
| Q |
11 |
agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaat |
110 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34657565 |
agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacagcactattgaattcttagcaatggaaattcaattaaatagccacccaacaat |
34657466 |
T |
|
| Q |
111 |
ataaactcacggcttgagttataacaaggtaggtagcaacacggc |
155 |
Q |
| |
|
||| ||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
34657465 |
atagactcacggcttgagttaaagcaaggtaggtagcaacacggc |
34657421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 11164571 - 11164427
Alignment:
| Q |
11 |
agtgagatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaattgaaattcaattaaatagccacccaacaat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
11164571 |
agtgaaatgaacggacggtgcagccaggaatttgaagaaatacacacggcactattgaattcttagcaatggaaattcaattaaatagccacacaacaat |
11164472 |
T |
|
| Q |
111 |
ataaactcacggcttgagttataacaaggtaggtagcaacacggc |
155 |
Q |
| |
|
||| ||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
11164471 |
atagactcatggcttgagttaaagcaaggtaggtagcaacacggc |
11164427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University