View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14431_high_9 (Length: 238)

Name: NF14431_high_9
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14431_high_9
NF14431_high_9
[»] chr1 (18 HSPs)
chr1 (117-222)||(17414331-17414436)
chr1 (76-222)||(3701252-3701378)
chr1 (117-222)||(3696139-3696244)
chr1 (145-202)||(3468378-3468435)
chr1 (147-202)||(28574607-28574662)
chr1 (147-202)||(28598619-28598674)
chr1 (117-191)||(19311134-19311208)
chr1 (117-194)||(1188129-1188206)
chr1 (117-186)||(10186015-10186084)
chr1 (117-163)||(13654658-13654704)
chr1 (117-182)||(35653062-35653127)
chr1 (151-221)||(43359093-43359163)
chr1 (117-186)||(10186331-10186400)
chr1 (147-194)||(16051503-16051550)
chr1 (127-166)||(21430814-21430853)
chr1 (123-186)||(44523905-44523968)
chr1 (117-171)||(1188307-1188361)
chr1 (117-146)||(28574643-28574672)
[»] chr8 (13 HSPs)
chr8 (117-221)||(10340726-10340830)
chr8 (147-202)||(14318454-14318509)
chr8 (147-202)||(18494016-18494071)
chr8 (147-202)||(26981714-26981769)
chr8 (147-202)||(26986828-26986883)
chr8 (147-202)||(34108541-34108596)
chr8 (147-202)||(14314750-14314805)
chr8 (117-146)||(14318444-14318473)
chr8 (117-182)||(18608460-18608525)
chr8 (117-146)||(26981704-26981733)
chr8 (117-146)||(26986818-26986847)
chr8 (117-146)||(34108577-34108606)
chr8 (115-143)||(14314738-14314766)
[»] chr4 (15 HSPs)
chr4 (119-221)||(18716831-18716932)
chr4 (117-221)||(3409357-3409461)
chr4 (119-221)||(18737504-18737608)
chr4 (117-191)||(14643554-14643628)
chr4 (147-202)||(35091225-35091280)
chr4 (148-202)||(35096338-35096392)
chr4 (147-221)||(3424152-3424225)
chr4 (117-163)||(22119056-22119102)
chr4 (151-221)||(32429076-32429146)
chr4 (117-191)||(47071712-47071786)
chr4 (130-191)||(30019677-30019738)
chr4 (119-186)||(34601855-34601922)
chr4 (117-146)||(3424142-3424171)
chr4 (168-221)||(18671181-18671234)
chr4 (117-146)||(35091261-35091290)
[»] chr3 (36 HSPs)
chr3 (117-212)||(18023942-18024038)
chr3 (145-202)||(5457848-5457905)
chr3 (147-202)||(4050118-4050173)
chr3 (147-202)||(4055252-4055307)
chr3 (147-202)||(5481327-5481382)
chr3 (147-202)||(6852791-6852846)
chr3 (147-202)||(6857894-6857949)
chr3 (147-202)||(8465060-8465115)
chr3 (147-202)||(10584697-10584752)
chr3 (147-202)||(10591134-10591189)
chr3 (147-202)||(10672777-10672832)
chr3 (147-202)||(10677890-10677945)
chr3 (148-202)||(8458622-8458676)
chr3 (147-221)||(49784837-49784911)
chr3 (147-202)||(1302083-1302138)
chr3 (129-212)||(18023362-18023445)
chr3 (147-222)||(20891439-20891514)
chr3 (147-202)||(31081346-31081401)
chr3 (147-202)||(33702438-33702493)
chr3 (145-202)||(269487-269544)
chr3 (147-202)||(31076239-31076294)
chr3 (145-218)||(3187282-3187355)
chr3 (117-191)||(29827783-29827857)
chr3 (117-146)||(1302073-1302102)
chr3 (117-146)||(4050154-4050183)
chr3 (117-146)||(4055288-4055317)
chr3 (117-146)||(5481317-5481346)
chr3 (117-146)||(6852781-6852810)
chr3 (117-146)||(6857884-6857913)
chr3 (117-146)||(8465096-8465125)
chr3 (117-146)||(10584687-10584716)
chr3 (117-146)||(10591124-10591153)
chr3 (117-146)||(10672767-10672796)
chr3 (117-146)||(10677880-10677909)
chr3 (117-146)||(20891495-20891524)
chr3 (117-146)||(33702428-33702457)
[»] chr5 (11 HSPs)
chr5 (117-202)||(2024354-2024439)
chr5 (147-202)||(9872263-9872318)
chr5 (147-202)||(9877378-9877433)
chr5 (147-202)||(39904155-39904210)
chr5 (117-191)||(35368651-35368725)
chr5 (119-191)||(43540594-43540666)
chr5 (117-222)||(4555885-4555990)
chr5 (147-202)||(39909268-39909323)
chr5 (117-146)||(9872253-9872282)
chr5 (117-146)||(9877368-9877397)
chr5 (117-146)||(39904191-39904220)
[»] chr7 (15 HSPs)
chr7 (117-184)||(2248881-2248948)
chr7 (147-202)||(12857099-12857154)
chr7 (147-202)||(14610639-14610694)
chr7 (147-202)||(26051331-26051386)
chr7 (147-202)||(26056444-26056499)
chr7 (147-202)||(26060690-26060745)
chr7 (147-202)||(26065803-26065858)
chr7 (147-202)||(12851986-12852041)
chr7 (117-146)||(12852022-12852051)
chr7 (117-146)||(12857135-12857164)
chr7 (117-146)||(26051367-26051396)
chr7 (117-146)||(26056480-26056509)
chr7 (117-146)||(26060726-26060755)
chr7 (117-146)||(26065839-26065868)
chr7 (117-186)||(37459731-37459800)
[»] scaffold0005 (1 HSPs)
scaffold0005 (117-191)||(173664-173738)
[»] chr6 (5 HSPs)
chr6 (147-202)||(21276083-21276138)
chr6 (117-191)||(12909575-12909649)
chr6 (117-191)||(21936436-21936510)
chr6 (121-191)||(12934682-12934752)
chr6 (117-146)||(21276119-21276148)
[»] chr2 (11 HSPs)
chr2 (147-202)||(14917221-14917276)
chr2 (147-202)||(17720365-17720420)
chr2 (148-202)||(39178909-39178963)
chr2 (117-194)||(20892126-20892203)
chr2 (147-202)||(17720038-17720093)
chr2 (147-202)||(30283289-30283344)
chr2 (117-191)||(42780494-42780568)
chr2 (148-202)||(45120697-45120751)
chr2 (117-146)||(14917211-14917240)
chr2 (117-146)||(17720028-17720057)
chr2 (117-146)||(17720355-17720384)
[»] scaffold0006 (1 HSPs)
scaffold0006 (117-163)||(144419-144465)
[»] scaffold0223 (1 HSPs)
scaffold0223 (147-202)||(1858-1913)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 17414331 - 17414436
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataagga 216  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||| ||  ||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  17414331 actttagaaccaaaacttgtaactcttcaccaaaagttgtaactcttcattagaatcattcatatacattagaacattattatttactaatagataatga 17414430  T
Q  217 accata 222  Q
    ||||||    
T  17414431 accata 17414436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 76 - 222
Target Start/End: Original strand, 3701252 - 3701378
Alignment:
Q  76 ccccgactatcgtaatacacatattatatggtggtgagtttactttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccat 175  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||                    |||||||||||||||||||||||||    
T  3701252 ccccgactatcgtaatacacgtattatatggtggtgagtttactttagaaccaaa--------------------agttgtaactctttataggaaccat 3701331  T
Q  176 tcatatacattagaacattattatttactaatagataaggaaccata 222  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||    
T  3701332 tcatatacattagaacattattatttactaatagataatgaaccata 3701378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 222
Target Start/End: Original strand, 3696139 - 3696244
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataagga 216  Q
    ||||| ||| ||||||||||||||||| ||||||||||| |||| || || |||| ||||||||||||||| |||||||||||||||  ||| |||| ||    
T  3696139 actttggaatcaaaagttgtaactctttatcaaaagttgcaacttttcatgggaatcattcatatacattaaaacattattatttaccgataaataatga 3696238  T
Q  217 accata 222  Q
    ||||||    
T  3696239 accata 3696244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 3468435 - 3468378
Alignment:
Q  145 atcaaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||||||| |||| |||||||||||||||||||||| |||||||||||||||    
T  3468435 atcaaaagttgtaattcttcataggaaccattcatatacattggaacattattattta 3468378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 28574662 - 28574607
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  28574662 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 28574607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 28598674 - 28598619
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  28598674 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 28598619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 19311208 - 19311134
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||| || |||| | |||||||||||| ||||    
T  19311208 actttataaccaaaagttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattggaac 19311134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 194
Target Start/End: Complemental strand, 1188206 - 1188129
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacatt 194  Q
    |||||||||||||||||||||||| |||| ||| |||||||||| || || |||| | |||||||||||| |||||||    
T  1188206 actttagaaccaaaagttgtaacttttcaccaagagttgtaactattcatgggaatctttcatatacattggaacatt 1188129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 10186084 - 10186015
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacatt 186  Q
    ||||||||| ||||||||||||||||||| ||| | |||||||||||||| |||| | ||||||||||||    
T  10186084 actttagaatcaaaagttgtaactcttcaccaagaattgtaactctttatgggaatctttcatatacatt 10186015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 13654704 - 13654658
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctt 163  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  13654704 actttagaaccaaaagttgtaactcttcaccaagagttgtaactctt 13654658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 35653062 - 35653127
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatata 182  Q
    ||||| ||||||||||||||||||||||| ||| ||||||||| ||| || |||| ||||||||||    
T  35653062 actttggaaccaaaagttgtaactcttcaccaagagttgtaacacttcatgggaatcattcatata 35653127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 221
Target Start/End: Complemental strand, 43359163 - 43359093
Alignment:
Q  151 agttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataaggaaccat 221  Q
    ||||||||||||| ||  ||| |||||||||||||| ||||||||||||||| | || ||||| |||||||    
T  43359163 agttgtaactcttcatgagaatcattcatatacattggaacattattatttattgattgataatgaaccat 43359093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 10186331 - 10186400
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacatt 186  Q
    ||||||||  |||||||| |||||||||| ||| ||||||||||||| || |||| | ||||||||||||    
T  10186331 actttagactcaaaagttttaactcttcaccaagagttgtaactcttcatgggaatctttcatatacatt 10186400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 194
Target Start/End: Complemental strand, 16051550 - 16051503
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacatt 194  Q
    |||||||| ||||||||||| |||| ||||||||||||||| ||||||    
T  16051550 caaaagttataactctttatgggaatcattcatatacattataacatt 16051503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 21430814 - 21430853
Alignment:
Q  127 caaaagttgtaactcttcatcaaaagttgtaactctttat 166  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  21430814 caaaagttgtaactcttcatcaaaagttataattctttat 21430853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 186
Target Start/End: Original strand, 44523905 - 44523968
Alignment:
Q  123 gaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacatt 186  Q
    |||||||||||||||| |||||   || ||||||||||||| || |||| ||||||||||||||    
T  44523905 gaaccaaaagttgtaaatcttcgctaagagttgtaactcttcatgggaatcattcatatacatt 44523968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 1188361 - 1188307
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaa 171  Q
    ||||||||||||||| |||||||| |||| ||| ||||||||||| | |||||||    
T  1188361 actttagaaccaaaaattgtaacttttcaccaagagttgtaactcgtcataggaa 1188307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 28574672 - 28574643
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  28574672 actttagaaccaaaagttgtaactcttcat 28574643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 10340726 - 10340830
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataagga 216  Q
    |||||||||||||||||||| | |||| | ||| ||||||||||||| || | ||||||||||||||||| ||||||||||||||| | |||||||| ||    
T  10340726 actttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcatggaaaccattcatatacattggaacattattatttattgatagataatga 10340825  T
Q  217 accat 221  Q
    |||||    
T  10340826 accat 10340830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 14318454 - 14318509
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  14318454 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 14318509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 18494016 - 18494071
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  18494016 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 18494071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 26981714 - 26981769
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  26981714 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 26981769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 26986828 - 26986883
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  26986828 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 26986883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 34108596 - 34108541
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  34108596 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 34108541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 14314750 - 14314805
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || |||||||||| |||||||| |||||||||||||||    
T  14314750 caaaagttgtaactcttaatgggaaccattcgtatacattggaacattattattta 14314805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 14318444 - 14318473
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  14318444 actttagaaccaaaagttgtaactcttcat 14318473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 18608460 - 18608525
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatata 182  Q
    |||||||||| ||||||||| | |||| | ||| ||||||||||||| || |||| ||||||||||    
T  18608460 actttagaactaaaagttgtgattcttaaccaagagttgtaactcttcatgggaatcattcatata 18608525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 26981704 - 26981733
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  26981704 actttagaaccaaaagttgtaactcttcat 26981733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 26986818 - 26986847
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  26986818 actttagaaccaaaagttgtaactcttcat 26986847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 34108606 - 34108577
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  34108606 actttagaaccaaaagttgtaactcttcat 34108577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 115 - 143
Target Start/End: Original strand, 14314738 - 14314766
Alignment:
Q  115 ttactttagaaccaaaagttgtaactctt 143  Q
    |||||||||||||||||||||||||||||    
T  14314738 ttactttagaaccaaaagttgtaactctt 14314766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 18716932 - 18716831
Alignment:
Q  119 tttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataaggaac 218  Q
    ||||||||||||| | ||||||||||| ||| ||||||||||||| || ||||||||||||||||||| | ||||||||||||| | |||||||| ||||    
T  18716932 tttagaaccaaaact-gtaactcttcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatgaac 18716834  T
Q  219 cat 221  Q
    |||    
T  18716833 cat 18716831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 3409357 - 3409461
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataagga 216  Q
    |||||||||| ||||||||| |||||| | ||| | ||||||||||| ||  |||||||||||||||||| ||||||||||||||| | |||||||| ||    
T  3409357 actttagaactaaaagttgttactcttgaccaagatttgtaactcttcatgagaaccattcatatacattggaacattattatttattgatagataatga 3409456  T
Q  217 accat 221  Q
    |||||    
T  3409457 accat 3409461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 18737608 - 18737504
Alignment:
Q  119 tttagaaccaaaagttgtaactct---tcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataagg 215  Q
    ||||||||||||| ||||||||||   ||| ||| ||||||||||||| || ||||||||||||||||||| | ||||||||||||| | |||||||| |    
T  18737608 tttagaaccaaaa-ttgtaactctaattcaccaagagttgtaactcttcatgggaaccattcatatacattggtacattattatttagtgatagataatg 18737510  T
Q  216 aaccat 221  Q
    ||||||    
T  18737509 aaccat 18737504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 14643554 - 14643628
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| || || |||| |||||||||||||| ||||    
T  14643554 actttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattggaac 14643628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 35091280 - 35091225
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  35091280 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 35091225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 35096392 - 35096338
Alignment:
Q  148 aaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  35096392 aaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 35096338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 3424152 - 3424225
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataaggaaccat 221  Q
    ||||||||||||||||| ||  ||||||| |||||||||| ||||||||||||||| | |||||||| |||||||    
T  3424152 caaaagttgtaactcttcatgagaaccat-catatacattggaacattattatttattgatagataatgaaccat 3424225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 22119102 - 22119056
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctt 163  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  22119102 actttagaaccaaaagttgtaactcttcatcaagagttgcaactctt 22119056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 151 - 221
Target Start/End: Original strand, 32429076 - 32429146
Alignment:
Q  151 agttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataaggaaccat 221  Q
    ||||||||||||| || | || |||||||||||||| ||||||||||||||| | |||||||| |||||||    
T  32429076 agttgtaactcttcatggaaatcattcatatacattggaacattattatttattgatagataatgaaccat 32429146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 47071786 - 47071712
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    |||||| |||||||||||||||||||||| ||| ||||||||||||| ||   || |||||||||||||| ||||    
T  47071786 actttacaaccaaaagttgtaactcttcaccaagagttgtaactcttcatgaaaatcattcatatacattggaac 47071712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 130 - 191
Target Start/End: Original strand, 30019677 - 30019738
Alignment:
Q  130 aagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    |||||||||||||||| ||| ||||||||||||| || |||| | |||||||||||| ||||    
T  30019677 aagttgtaactcttcaccaagagttgtaactcttcatgggaatctttcatatacattggaac 30019738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 186
Target Start/End: Original strand, 34601855 - 34601922
Alignment:
Q  119 tttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacatt 186  Q
    |||||||| ||||||||||||| ||||  | |||||||||||||| ||  ||| ||||||||||||||    
T  34601855 tttagaactaaaagttgtaacttttcacgagaagttgtaactcttcatgagaatcattcatatacatt 34601922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 3424142 - 3424171
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  3424142 actttagaaccaaaagttgtaactcttcat 3424171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 18671234 - 18671181
Alignment:
Q  168 ggaaccattcatatacattagaacattattatttactaatagataaggaaccat 221  Q
    ||||||||||||||||||| | ||||||||||||| | ||| |||| |||||||    
T  18671234 ggaaccattcatatacattggtacattattatttattgataaataatgaaccat 18671181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 35091290 - 35091261
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  35091290 actttagaaccaaaagttgtaactcttcat 35091261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 18023942 - 18024038
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaag-ttgtaactctttataggaaccattcatatacattagaacattattatttactaatagata 212  Q
    |||||| |||||||||||||||||  ||| |||||| ||||||||||| ||||||| || ||||||||||| ||||||||||||||||| |||||||    
T  18023942 actttataaccaaaagttgtaactaatcaccaaaaggttgtaactcttcataggaatcaatcatatacattggaacattattatttactgatagata 18024038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 5457848 - 5457905
Alignment:
Q  145 atcaaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  5457848 atcaaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 5457905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 4050173 - 4050118
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  4050173 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 4050118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 4055307 - 4055252
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  4055307 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 4055252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 5481327 - 5481382
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  5481327 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 5481382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 6852791 - 6852846
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  6852791 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 6852846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 6857894 - 6857949
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  6857894 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 6857949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 8465115 - 8465060
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  8465115 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 8465060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 10584697 - 10584752
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  10584697 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 10584752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 10591134 - 10591189
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  10591134 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 10591189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 10672777 - 10672832
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  10672777 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 10672832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 10677890 - 10677945
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  10677890 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 10677945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 8458676 - 8458622
Alignment:
Q  148 aaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  8458676 aaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 8458622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 49784911 - 49784837
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataaggaaccat 221  Q
    ||||||||||||||||| || | || |||||||||||||| ||||||||||||||| | |||||||| |||||||    
T  49784911 caaaagttgtaactcttcatggaaatcattcatatacattggaacattattatttattgatagataatgaaccat 49784837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 1302083 - 1302138
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||| ||| |||||||||||||||    
T  1302083 caaaagttgtaactcttcatgggaaccattcatatatattggaacattattattta 1302138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 129 - 212
Target Start/End: Original strand, 18023362 - 18023445
Alignment:
Q  129 aaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagata 212  Q
    |||||||||| |||| | || || ||| |||| || ||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  18023362 aaagttgtaagtctttaccagaaattgcaacttttcataggaatcattcatatatattagaacattattatttactgatagata 18023445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Complemental strand, 20891514 - 20891439
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataaggaaccata 222  Q
    ||||||||||||||||| ||  ||| ||||||||||||||  || ||||||||||||| |||||||| ||||||||    
T  20891514 caaaagttgtaactcttcatgagaatcattcatatacattgaaaaattattatttactgatagataatgaaccata 20891439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 31081346 - 31081401
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||| |||||| || ||||||||||||||||||| |||||||||||||||    
T  31081346 caaaagttgtgactcttcatgggaaccattcatatacattggaacattattattta 31081401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 33702438 - 33702493
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||  |||||||||||||||    
T  33702438 caaaagttgtaactcttcatgggaaccattcatatacataggaacattattattta 33702493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 202
Target Start/End: Complemental strand, 269544 - 269487
Alignment:
Q  145 atcaaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||| |||||||| | ||||||||||||| ||| |||||||||||||||    
T  269544 atcaaaagttgtagctctttatggaaaccattcatatatattggaacattattattta 269487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 31076239 - 31076294
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||| |||||| || | ||||||||||||||||| |||||||||||||||    
T  31076239 caaaagttgtgactcttcatggaaaccattcatatacattggaacattattattta 31076294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 218
Target Start/End: Original strand, 3187282 - 3187355
Alignment:
Q  145 atcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataaggaac 218  Q
    |||||||||||||| | |||||  ||| ||||||||| |||| ||||| ||||||||||| |||||||| ||||    
T  3187282 atcaaaagttgtaattttttatgagaatcattcatatgcattggaacaatattatttactgatagataatgaac 3187355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 29827857 - 29827783
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||| ||||||||||||||||||| ||| |||||||| |||  || |||| | |||||||| ||| ||||    
T  29827857 actttagaatcaaaagttgtaactcttcaccaagagttgtaattctgcatgggaatctttcatatagattggaac 29827783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 1302073 - 1302102
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  1302073 actttagaaccaaaagttgtaactcttcat 1302102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 4050183 - 4050154
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  4050183 actttagaaccaaaagttgtaactcttcat 4050154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 4055317 - 4055288
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  4055317 actttagaaccaaaagttgtaactcttcat 4055288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 5481317 - 5481346
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  5481317 actttagaaccaaaagttgtaactcttcat 5481346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 6852781 - 6852810
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  6852781 actttagaaccaaaagttgtaactcttcat 6852810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 6857884 - 6857913
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  6857884 actttagaaccaaaagttgtaactcttcat 6857913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 8465125 - 8465096
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  8465125 actttagaaccaaaagttgtaactcttcat 8465096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 10584687 - 10584716
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  10584687 actttagaaccaaaagttgtaactcttcat 10584716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 10591124 - 10591153
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  10591124 actttagaaccaaaagttgtaactcttcat 10591153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 10672767 - 10672796
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  10672767 actttagaaccaaaagttgtaactcttcat 10672796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 10677880 - 10677909
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  10677880 actttagaaccaaaagttgtaactcttcat 10677909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 20891524 - 20891495
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  20891524 actttagaaccaaaagttgtaactcttcat 20891495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 33702428 - 33702457
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  33702428 actttagaaccaaaagttgtaactcttcat 33702457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 2024439 - 2024354
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||||||||||||| | |||| | ||| ||||||||||||| |  ||||||||||||||||||| |||||||||||||||    
T  2024439 actttagaaccaaaagttgttaatcttgaccaagagttgtaactcttcacgggaaccattcatatacattggaacattattattta 2024354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 9872263 - 9872318
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  9872263 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 9872318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 9877378 - 9877433
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  9877378 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 9877433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 39904210 - 39904155
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  39904210 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 39904155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 35368651 - 35368725
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||| |||||||||||||| |||||||| ||||||||||||||||  ||| | |||||||||||| ||||    
T  35368651 actttagaatcaaaagttgtaacttttcatcaagagttgtaactctttatgagaatctttcatatacattggaac 35368725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 191
Target Start/End: Original strand, 43540594 - 43540666
Alignment:
Q  119 tttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||||||||||||||||||||| ||| ||||||||||||| || | ||  ||||||||||||| ||||    
T  43540594 tttagaaccaaaagttgtaactcttcaccaagagttgtaactcttcatggtaattattcatatacattggaac 43540666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 222
Target Start/End: Complemental strand, 4555990 - 4555885
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacattattatttactaatagataagga 216  Q
    |||||||||  ||||||||||||| || |||||||||| || ||||| |  | || ||||||||||||||  || ||||||||||||| |||||||  ||    
T  4555990 actttagaattaaaagttgtaactttttatcaaaagttatacctcttcacggaaatcattcatatacattgaaaaattattatttacttatagatagtga 4555891  T
Q  217 accata 222  Q
    ||||||    
T  4555890 accata 4555885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 39909323 - 39909268
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||||||||||  |   ||||||||||||||||| |||||||||||||||    
T  39909323 caaaagttgtaactcttcgtgtaaaccattcatatacattggaacattattattta 39909268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 9872253 - 9872282
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  9872253 actttagaaccaaaagttgtaactcttcat 9872282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 9877368 - 9877397
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  9877368 actttagaaccaaaagttgtaactcttcat 9877397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 39904220 - 39904191
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  39904220 actttagaaccaaaagttgtaactcttcat 39904191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 117 - 184
Target Start/End: Original strand, 2248881 - 2248948
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatataca 184  Q
    ||||||||||||||||| ||||||||||| ||| ||||||||||||| ||| ||||||||||||||||    
T  2248881 actttagaaccaaaagtagtaactcttcagcaagagttgtaactcttcatacgaaccattcatataca 2248948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 12857154 - 12857099
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  12857154 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 12857099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 14610694 - 14610639
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  14610694 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 14610639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 26051386 - 26051331
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  26051386 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 26051331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 26056499 - 26056444
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  26056499 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 26056444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 26060745 - 26060690
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  26060745 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 26060690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 26065858 - 26065803
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  26065858 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 26065803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 12852041 - 12851986
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || |||||||||||||||||||   |||||||||||||    
T  12852041 caaaagttgtaactcttcatgggaaccattcatatacattgttacattattattta 12851986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 12852051 - 12852022
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  12852051 actttagaaccaaaagttgtaactcttcat 12852022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 12857164 - 12857135
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  12857164 actttagaaccaaaagttgtaactcttcat 12857135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 26051396 - 26051367
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  26051396 actttagaaccaaaagttgtaactcttcat 26051367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 26056509 - 26056480
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  26056509 actttagaaccaaaagttgtaactcttcat 26056480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 26060755 - 26060726
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  26060755 actttagaaccaaaagttgtaactcttcat 26060726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 26065868 - 26065839
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  26065868 actttagaaccaaaagttgtaactcttcat 26065839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 186
Target Start/End: Original strand, 37459731 - 37459800
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacatt 186  Q
    |||||| || |||||||| |||||||||| ||||||  | ||||||| || |||| ||||||||||||||    
T  37459731 actttaaaatcaaaagttttaactcttcaccaaaagcaggaactcttcatgggaatcattcatatacatt 37459800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 173738 - 173664
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| || || |||| |||||||||||||| ||||    
T  173738 actttagaaccaaaagttgtaactcttcaccaagagttgtaactattcatgggaatcattcatatacattggaac 173664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 21276138 - 21276083
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  21276138 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 21276083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 12909649 - 12909575
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||||||||||||||||||||||| ||| |||||||||| || ||  ||| |||||||||||||| ||||    
T  12909649 actttagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattggaac 12909575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 191
Target Start/End: Original strand, 21936436 - 21936510
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||||| | || | || ||||||||| ||||    
T  21936436 actttagaaccaaaagttgtaactcttcaccaagagttgtaactctttatggaaatcttttatatacatttgaac 21936510  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 12934752 - 12934682
Alignment:
Q  121 tagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    ||||||||||||||||||||||||| ||| |||||||||| || ||  ||| |||||||||||||| ||||    
T  12934752 tagaaccaaaagttgtaactcttcaccaagagttgtaacttttcatgagaatcattcatatacattggaac 12934682  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Complemental strand, 21276148 - 21276119
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  21276148 actttagaaccaaaagttgtaactcttcat 21276119  T

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Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 14917221 - 14917276
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  14917221 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 14917276  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 17720365 - 17720420
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  17720365 caaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 17720420  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 39178963 - 39178909
Alignment:
Q  148 aaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  39178963 aaaagttgtaactcttcatgggaaccattcatatacattggaacattattattta 39178909  T

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Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 194
Target Start/End: Original strand, 20892126 - 20892203
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaacatt 194  Q
    |||||| |||||||||||||| || |||| ||| ||||||||||||| ||  |||||||||||||||||| |||||||    
T  20892126 actttaaaaccaaaagttgtatcttttcaccaagagttgtaactcttcatgagaaccattcatatacattggaacatt 20892203  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 17720038 - 17720093
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || ||||| ||||||||||||| |||||||||||||||    
T  17720038 caaaagttgtaactcttcatgggaactattcatatacattggaacattattattta 17720093  T

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Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 30283289 - 30283344
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||||||||| || |||||||||||| |||||| |||||||||||||||    
T  30283289 caaaagttgtaactcttcatgggaaccattcatgtacattggaacattattattta 30283344  T

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Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 191
Target Start/End: Complemental strand, 42780568 - 42780494
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctttataggaaccattcatatacattagaac 191  Q
    |||||||||||||||||||| |||||| | ||||||||||||||||| ||  ||| | |||||||||||| ||||    
T  42780568 actttagaaccaaaagttgttactcttgaccaaaagttgtaactcttcatgagaatctttcatatacattggaac 42780494  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 45120751 - 45120697
Alignment:
Q  148 aaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    |||||||||||||||| || |||||||||||||||||||  ||||||||||||||    
T  45120751 aaaagttgtaactcttcatgggaaccattcatatacattgaaacattattattta 45120697  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 14917211 - 14917240
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  14917211 actttagaaccaaaagttgtaactcttcat 14917240  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 17720028 - 17720057
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  17720028 actttagaaccaaaagttgtaactcttcat 17720057  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 17720355 - 17720384
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcat 146  Q
    ||||||||||||||||||||||||||||||    
T  17720355 actttagaaccaaaagttgtaactcttcat 17720384  T

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Target: scaffold0006 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 163
Target Start/End: Complemental strand, 144465 - 144419
Alignment:
Q  117 actttagaaccaaaagttgtaactcttcatcaaaagttgtaactctt 163  Q
    ||||||||||||||||||||||||||||| ||| |||||||||||||    
T  144465 actttagaaccaaaagttgtaactcttcaccaagagttgtaactctt 144419  T

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Target: scaffold0223 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 1858 - 1913
Alignment:
Q  147 caaaagttgtaactctttataggaaccattcatatacattagaacattattattta 202  Q
    ||||||||||| ||||| || ||||||||||||||||||| |||||||| ||||||    
T  1858 caaaagttgtatctcttcatgggaaccattcatatacattggaacattactattta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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