View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14431_low_1 (Length: 1114)

Name: NF14431_low_1
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14431_low_1
NF14431_low_1
[»] chr7 (7 HSPs)
chr7 (119-601)||(45047538-45048025)
chr7 (661-940)||(45047267-45047538)
chr7 (1056-1114)||(45047087-45047145)
chr7 (557-717)||(45043713-45043872)
chr7 (861-933)||(45043293-45043365)
chr7 (271-358)||(25428012-25428100)
chr7 (30-68)||(45048047-45048085)
[»] chr6 (3 HSPs)
chr6 (30-406)||(25571909-25572305)
chr6 (30-406)||(26006377-26006773)
chr6 (119-406)||(26125142-26125441)
[»] chr2 (1 HSPs)
chr2 (269-406)||(23362962-23363099)
[»] chr4 (1 HSPs)
chr4 (314-406)||(31606053-31606145)
[»] chr5 (3 HSPs)
chr5 (314-406)||(12632991-12633083)
chr5 (296-395)||(2775810-2775909)
chr5 (314-387)||(24093988-24094062)
[»] chr1 (1 HSPs)
chr1 (314-394)||(45291613-45291693)
[»] chr3 (2 HSPs)
chr3 (558-724)||(38345862-38346025)
chr3 (571-647)||(38358225-38358300)


Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 119 - 601
Target Start/End: Complemental strand, 45048025 - 45047538
Alignment:
Q  119 attctgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaa--tg 216  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||||||| |||||||||||  ||    
T  45048025 attctgaaaataggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttaacatttgtttttttcttaataacacacctgaaaaaatg 45047926  T
Q  217 acatttcttagagggaaattaacacattcaaatttttatgagctaaaatcaatttttattgtgtaaatttgaaattgttatggttttgtggtccctatta 316  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  45047925 acatttcttagagggaaattaacacattcaaatttttacgagctaaaatcaatttttattgtgtaaatttaaaattgttatggttttgtggtccctatta 45047826  T
Q  317 ctataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaatttttaagattaaga 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  45047825 ctataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattagattggggcaaatttttaagattaaga 45047726  T
Q  417 ttaagatattatctggagnnnnnnnctcattttgttcctattcattgttataaattttatcagttaattcatgtacttggtctatacaattgtggtagaa 516  Q
    ||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45047725 ttaagatattatctggagaaaaaaactcattttattcctattcattgttataaattttatcagttaattcatgtacttggtctatacaattgtggtagaa 45047626  T
Q  517 gggg---nnnnnnnnggatttttgtgataaatctctattagtgtttacttacatgttaattattattggaattggatttgtagatgta 601  Q
    ||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45047625 ggggaaaaaaaaaaaggatttttgtgataaatctctattagtgtttacttacatgttaattattattggaattggatttgtagatgta 45047538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 661 - 940
Target Start/End: Complemental strand, 45047538 - 45047267
Alignment:
Q  661 aaacaaaatattgatcgacataacaaaagctgggaaacacgctgaactccttgctgccgatatcggtggtagcagcagtgggggtagtggaggtcgacac 760  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||    
T  45047538 aaacaaaatattgatcgacataacaaaagctgggaaacacgctgaactccttgctgccgatatcggtggtagcagcagtgg---------aggtcgacac 45047448  T
Q  761 aatcacagtcgcggacacgggtctaatccttacagatccaatagtgttttaacactacctggacaagaacaatggcaacataagaaacaccaacgtccct 860  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  45047447 aatcacagtcgcggacacgggtctaatccttacagatccaatagtgttttaacactacctggactagaacaaaggcaacataagaaacaccaacgtccct 45047348  T
Q  861 atgatacaaataacagatgtgttattttgtgatcaattaattagaataagttat-acattatagtttatttgaatatttgc 940  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  45047347 atgatacaaataacagatgtgttattttgtgatcaattaattagaataagttataacattatagtttatttgaatatttgc 45047267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 1056 - 1114
Target Start/End: Complemental strand, 45047145 - 45047087
Alignment:
Q  1056 gtttggatgttggactactaattttgtgataataatataactacgttattatagactgc 1114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45047145 gtttggatgttggactactaattttgtgataataatataactacgttattatagactgc 45047087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 557 - 717
Target Start/End: Complemental strand, 45043872 - 45043713
Alignment:
Q  557 tttacttacatgttaat--tattattggaattggatttgtagatgtatcctacaaccattgatgcaactcgtggtatcattcgaatttctggggcaatat 654  Q
    ||||||||||| |||||  ||||||||||||||| ||||||||||| ||||  | | || |||||||| |  ||||| |||||||||||||| ||||||     
T  45043872 tttacttacattttaatcatattattggaattggctttgtagatgtttccttta-ctatcgatgcaacacacggtattattcgaatttctggagcaata- 45043775  T
Q  655 agatccaaacaaaatattgatcgacataacaaaagctgggaaacacgctgaactccttgctgc 717  Q
     |||||||  ||  | |||| ||| |||||||||||||||||||| ||||||||| |||||||    
T  45043774 -gatccaagtaagcttttgaccgaaataacaaaagctgggaaacatgctgaactcattgctgc 45043713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 861 - 933
Target Start/End: Complemental strand, 45043365 - 45043293
Alignment:
Q  861 atgatacaaataacagatgtgttattttgtgatcaattaattagaataagttatacattatagtttatttgaa 933  Q
    |||||||||||||||  ||||||||| ||||| ||||| ||||| ||||||| ||||||||||||||| ||||    
T  45043365 atgatacaaataacaattgtgttattatgtgaccaattgattagtataagttttacattatagtttatctgaa 45043293  T

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Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 358
Target Start/End: Complemental strand, 25428100 - 25428012
Alignment:
Q  271 tttattgtgtaaatttga-aattgttatggttttgtggtccctattactataagtgatgataaaatgagattataaaatatgatgattt 358  Q
    ||||||||| |||| ||| |||||||||||||||||||||||||||| || | ||||||||||| ||   || |||||| |||||||||    
T  25428100 tttattgtgaaaatgtgagaattgttatggttttgtggtccctattattaaatgtgatgataaattgtacttctaaaatctgatgattt 25428012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 45048085 - 45048047
Alignment:
Q  30 ttgaatttgaattgagtgaggtcgggtaatgagaatttt 68  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  45048085 ttgaatttgaattgagtgaggtggggtaatgagaatttt 45048047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 406
Target Start/End: Complemental strand, 25572305 - 25571909
Alignment:
Q  30 ttgaatttgaattgagtgaggtcgggtaatgagaattttgtctgcagaattttcactatcaaggtgaaagagagattttccaatgtgaaa---------- 119  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||              
T  25572305 ttgaatttgaattgagtgaggtggggtaatgagaatt--gtctgcaaaattttcactatcaaggtgaaagagagattttccaacgtgaaaacagtgaatg 25572208  T
Q  120 -ttctgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaatgac 218  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||       |||||||| ||||||||||||| |    
T  25572207 attttgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaattgaacatttgtttttttcttaataacacacctgaaaatgcc 25572108  T
Q  219 atttcttagagggaaattaacacattcaaatttttatgagctaaaatcaatttt-----------tattgtgtaaatttgaaattgttatggttttgtgg 307  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||           ||||||||||||||||||||||||||||||||| |    
T  25572107 atttcttagagggaaattaacacattcaattttttatgaactaaaatgaattttgatgttatttttattgtgtaaatttgaaattgttatggttttgttg 25572008  T
Q  308 tccctattactataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaattttt 406  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25572007 tccctattactataagtgatggtaaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaattttt 25571909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 406
Target Start/End: Complemental strand, 26006773 - 26006377
Alignment:
Q  30 ttgaatttgaattgagtgaggtcgggtaatgagaattttgtctgcagaattttcactatcaaggtgaaagagagattttccaatgtgaaa---------- 119  Q
    |||||||||||||||||||||| ||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||| ||||||              
T  26006773 ttgaatttgaattgagtgaggtggggtaatgagaatt--gtctgcaaaattttcactatcaaggtgaaagagagattttccaacgtgaaaacagtgaatg 26006676  T
Q  120 -ttctgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaatgac 218  Q
     || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||       |||||||| ||||||||||||| |    
T  26006675 attttgaaaagaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaattgaacatttgtttttttcttaataacacacctgaaaatgcc 26006576  T
Q  219 atttcttagagggaaattaacacattcaaatttttatgagctaaaatcaatttt-----------tattgtgtaaatttgaaattgttatggttttgtgg 307  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||           ||||||||||||||||||||||||||||||||| |    
T  26006575 atttcttagagggaaattaacacattcaattttttatgaactaaaatgaattttgatgttatttttattgtgtaaatttgaaattgttatggttttgttg 26006476  T
Q  308 tccctattactataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaattttt 406  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26006475 tccctattactataagtgatggtaaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaattttt 26006377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 119 - 406
Target Start/End: Complemental strand, 26125441 - 26125142
Alignment:
Q  119 attctgaaaa-gaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaatttagcatttgnnnnnnncttaataatacacctgaaaatga 217  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||       |||||||| |||| |||||||||    
T  26125441 attctgaaaatgaggagagtttgagtgctgggcttagcatagttgggcctcatttcaaattgaacatttgtttttttcttaataacacacttgaaaatga 26125342  T
Q  218 catttcttagagggaaattaacacattcaaatttttatgagctaaaatcaatttt-----------tattgtgtaaatttgaaattgttatggttttgtg 306  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||           |||||||||||||||||||||||||||||||||     
T  26125341 catttcttagagggaaattaacacattcaattttttatgaactaaaatgaattttgatgttatttttattgtgtaaatttgaaattgttatggttttgtt 26125242  T
Q  307 gtccctattactataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaattttt 406  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26125241 gtccctattactataagtgatggtaaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaaatttt 26125142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 5e-62; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 5e-62
Query Start/End: Original strand, 269 - 406
Target Start/End: Complemental strand, 23363099 - 23362962
Alignment:
Q  269 tttttattgtgtaaatttgaaattgttatggttttgtggtccctattactataagtgatgataaaatgagattataaaatatgatgatttattgtaggag 368  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  23363099 tttttattgtgtaaatttcaaattgttatggttttgtggtccctattactataagtgatgataaaatgagattataaaaaatgatgatttattgtaggag 23363000  T
Q  369 gcttagaattttgacacattggattggggcaaattttt 406  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  23362999 gcttagaattttgacacattggattggtgcaatttttt 23362962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 314 - 406
Target Start/End: Complemental strand, 31606145 - 31606053
Alignment:
Q  314 ttactataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaattttt 406  Q
    |||||| || ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||    
T  31606145 ttactaaaaatgacgataaaatgagattataaaatatgatgatttattgtaggtggcttagaattttgacacattggattgaagcaaattttt 31606053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 5e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 5e-28
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 12632991 - 12633083
Alignment:
Q  314 ttactataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattggggcaaattttt 406  Q
    |||||| || |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||    
T  12632991 ttactaaaaatgatgataaaatgagattatgaaatatgatgatttattgtaggtggcttagaattttgacacattagattgaagcaaattttt 12633083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 2775909 - 2775810
Alignment:
Q  296 atggttttgtggtccctattactataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattgg 395  Q
    |||||||||||||||||||||||| | ||||||||||||||   ||| ||||| |||||||||    | |||||||||||||||||||||||||||||||    
T  2775909 atggttttgtggtccctattactaaatgtgatgataaaatgcacttaaaaaatttgatgatttggcattggaggcttagaattttgacacattggattgg 2775810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 387
Target Start/End: Complemental strand, 24094062 - 24093988
Alignment:
Q  314 ttactataagtgatgataaaatgagatt-ataaaatatgatgatttattgtaggaggcttagaattttgacacat 387  Q
    |||||| || ||||| ||||||||| || |||| || |||||| || ||||||| ||||||||||||||||||||    
T  24094062 ttactaaaaatgatgttaaaatgagctttataacatgtgatgaatttttgtaggtggcttagaattttgacacat 24093988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 314 - 394
Target Start/End: Original strand, 45291613 - 45291693
Alignment:
Q  314 ttactataagtgatgataaaatgagattataaaatatgatgatttattgtaggaggcttagaattttgacacattggattg 394  Q
    |||||| || ||||||||||||||||||||||||||||||||| |||| |||  |||||||||||||||||||||||||||    
T  45291613 ttactaaaaatgatgataaaatgagattataaaatatgatgatatattatagatggcttagaattttgacacattggattg 45291693  T

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Target: chr3 (Bit Score: 52; Significance: 3e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 558 - 724
Target Start/End: Original strand, 38345862 - 38346025
Alignment:
Q  558 ttacttacatgttaattattattggaattggatttgtagatgtatcctacaaccattgatgcaactcgtggtatcattcgaatttctggggcaatataga 657  Q
    |||||||||| ||  ||||| |||||||||||  |||||||||||| | |||| ||||||||||| | |||||| |||||||||||||| |||  |||||    
T  38345862 ttacttacattttcgttattgttggaattggacctgtagatgtatcattcaac-attgatgcaacacatggtattattcgaatttctggtgca--ataga 38345958  T
Q  658 tccaaacaaaatattgatcgacataacaaaagctgggaaacacgctgaactccttgctgccgatatc 724  Q
    ||||| |||  |  |||  || ||||  |||||||||||||||||||||||  ||||||||||||||    
T  38345959 tccaatcaagcttctgactgaaataaagaaagctgggaaacacgctgaacttattgctgccgatatc 38346025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 571 - 647
Target Start/End: Original strand, 38358225 - 38358300
Alignment:
Q  571 aattattattggaattggatttgtagatgtatcctacaaccattgatgcaactcgtggtatcattcgaatttctggg 647  Q
    |||||||| | |||| ||||||| ||||||||||||| | |||| ||||||||| ||||||||||| ||||| ||||    
T  38358225 aattattagtagaatcggatttgcagatgtatcctac-atcattaatgcaactcatggtatcattcaaatttatggg 38358300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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