View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14431_low_10 (Length: 251)
Name: NF14431_low_10
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14431_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2962373 - 2962612
Alignment:
| Q |
1 |
taaggttcttagaataacgaaaagaaaatatttacaattaattccttaagtcgttaggttgacgttaagaaagtcatttacgtaagtcagactgttgacc |
100 |
Q |
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| T |
2962373 |
taaggttcttagaataacgaaaagaaagtatttacaattaattccttaagtcgttaggttgacgttaagaaagtcatttacgtaagtcagaccgttgacc |
2962472 |
T |
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| Q |
101 |
acccggcctaagaatttttccccnnnnnnnngtcacaataaaaattttcactccttttctttgtaaatcaatttccctcttttatttgttaattattaaa |
200 |
Q |
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| T |
2962473 |
acccgacctaagaatttttcccc-tttttttgtcacaataaaaactttcactccttttctttgtaaatcaatttccctcttttatttgttaattattaaa |
2962571 |
T |
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| Q |
201 |
taaattaatagttgtatataaagcttctcactttctctgtg |
241 |
Q |
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| T |
2962572 |
taaattaatagttgtatataaagcttctcactttctctgtg |
2962612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 2941638 - 2941836
Alignment:
| Q |
10 |
tagaataacgaaaagaaaatatttacaattaattccttaagtcgttaggttgacg-------ttaagaaagtcatttacgtaagtcagactgttgaccac |
102 |
Q |
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| T |
2941638 |
tagaataatgaaaaaaaaatatttataattaattccttaagtcgtgaggttaactaactaacttaagaa-gtcagttacgtaagtcggtcagttgaccaa |
2941736 |
T |
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| Q |
103 |
ccggcctaagaatttttccc-cnnnnnnnngtcacaataaaaattttcactccttttctttgtaaatcaatttccctcttttatttgttaattattaaat |
201 |
Q |
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| T |
2941737 |
ccgacctaagaatttttccctcatatttttgtcacagtaaaaactttcgctccttttctttgtaaatcaatttccctcttttatttattaactattaaat |
2941836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 2941866 - 2941903
Alignment:
| Q |
201 |
taaattaatagttgtatataaagcttctcactttctct |
238 |
Q |
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| T |
2941866 |
taaattaatagttatatataaagcttctcactttctct |
2941903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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