View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14431_low_12 (Length: 233)
Name: NF14431_low_12
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14431_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 143; Significance: 3e-75; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 5306839 - 5307005
Alignment:
| Q |
17 |
cacagacagcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatcccagttccaaa |
116 |
Q |
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| T |
5306839 |
cacaaacagcagcaacaatttgtcgatatgcattgagtgcaaaaatgaaagtgccctgaaccaagatgacccttgataaaagttgtatcccagttccaaa |
5306938 |
T |
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| Q |
117 |
tatttgcactaataacatgctaagaagagcttgggaagagataaaccattctttcatactttgagtt |
183 |
Q |
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| T |
5306939 |
tatttgcactaataacatgctaagaagagcttgggaagagatgaaccattctttcatactttgagtt |
5307005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 29145015 - 29144846
Alignment:
| Q |
9 |
aggagcagcacagacagcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatccca |
108 |
Q |
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| T |
29145015 |
aggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatccca |
29144916 |
T |
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| Q |
109 |
gttccaaatatttgcactaataacatgctaagaagagcttgggaagagataaaccattctttcatacttt |
178 |
Q |
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| T |
29144915 |
gttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatacttt |
29144846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 178
Target Start/End: Original strand, 29226958 - 29227127
Alignment:
| Q |
9 |
aggagcagcacagacagcagcaacaatgtgtcgatatgcaatgagtgcaaaaatgaaagttccttgaaccaagatgacccttgataaaagttgtatccca |
108 |
Q |
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| T |
29226958 |
aggagcaacacaaatagcagcaacaatatgtcgataagcaatgagtgcaaaaatgtaagtcccttgaaccaaaatgactcttgatagaagttgcatccca |
29227057 |
T |
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| Q |
109 |
gttccaaatatttgcactaataacatgctaagaagagcttgggaagagataaaccattctttcatacttt |
178 |
Q |
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||| |||||||||||||||||||||| |||||||| ||||| || || | |||||||| |||||||||| |
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| T |
29227058 |
gttgcaaatatttgcactaataacatactaagaagtgcttgtgatgatttgaaccattccttcatacttt |
29227127 |
T |
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