View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14431_low_2 (Length: 772)
Name: NF14431_low_2
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14431_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 636; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 18 - 758
Target Start/End: Complemental strand, 17921564 - 17920824
Alignment:
| Q |
18 |
acaatctgggatgcatataattcaaggttgttcaccaactgattttgctacgcgtgtttcaataacttttatttgttttgactatggattgatttattgc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
17921564 |
acaatctgggatgcatataattcaaggttgttcaccaactgtttttgctacgcgtgtttcaataacttttacttgttttgactatggattgatttattgc |
17921465 |
T |
|
| Q |
118 |
ttgtagcatatatccttagactgcaaatacaggttttaattttgagtccaaaatagaaattgcttattatggtatatgaatcaaatatgtattcatatgc |
217 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
17921464 |
ttgtagcatatatccttagactgtaaatacaggttttaattttgaatccaaaatagaaattgcttattatggtatatgaatcaaatatgtattcatatac |
17921365 |
T |
|
| Q |
218 |
tgtccaaattagtcactgatgttaaatcaccacctatttatgttaaattcatttttgaacgtcacttgatgagaagcttcactcctttagattattcttt |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
17921364 |
tgtccaaattagtcactgatgttaaatcaccacctatttatgttaaattcatttttgaacatcacttgatgagaagcttcactcctttagattattcttt |
17921265 |
T |
|
| Q |
318 |
ctggaagcgtgatcattgccgatatcagttattcgtgtaaatggatttctatattttttattgctggtgggaattgctgtggagactgactaatcagttt |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
17921264 |
ctggaagcgtgatcattgccgatatcggttattcgtgtaaatggatttctatattttttattgctgatgggaattgctgtggagaatgactgatcagttt |
17921165 |
T |
|
| Q |
418 |
ttattcgtgtaaatgatgtttcctccttgcagatgagttagtgaagcttggaataactaattgtcttagaggtgaaattcattattcttattcaacctac |
517 |
Q |
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| T |
17921164 |
ttatttatgtaaatgatgtttcctccttgcagatgagttagtgaagcttggaataactaattgtctcagaggtgaaattcattattcttatttaacctac |
17921065 |
T |
|
| Q |
518 |
aatgttcttacgccttcatgcnnnnnnncgattctatatgaaacattgttgatctttcttgtttagcagaagtggatttggatcgctcttccatccatat |
617 |
Q |
| |
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|||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
17921064 |
aatgttcttacgcctttatgcaaaaaaacgattctacatgaaacgttgttgatctttcttgtttagcagaagcggatttggatcgctcttccatccatat |
17920965 |
T |
|
| Q |
618 |
ggctggagtatacttaatgctactgattcagtttcttgaaaacaaagtggcaatagagctcacacgagcacaattttccgcagcacaagaggttggtttt |
717 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17920964 |
ggctggagtatacttaatgctactgattcagtttcttgaaaacgaagtggcaatagagctcacacgagcacaattttccgcagcacaagaggttggtttt |
17920865 |
T |
|
| Q |
718 |
gctcctttaaggcttctatatttgggttcctgttgtatatt |
758 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
17920864 |
gctccttaaaggcttatatatttgggttcctgttgtatatt |
17920824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 547 - 758
Target Start/End: Complemental strand, 17968470 - 17968258
Alignment:
| Q |
547 |
gattctatatgaaacattgttgatctttcttgtttagcagaagtggatttggatcgctcttccatccatatggctggagtatacttaatgctactgattc |
646 |
Q |
| |
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||||||||||||||| ||||||| || | || ||||||| ||| | | ||| | | |||||| |||| | ||||||||| |||||||||| |||| | || |
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| T |
17968470 |
gattctatatgaaaccttgttgaactatattatttagcataagcgaacttgcaacactcttctatccttttggctggagaatacttaatgttactaagtc |
17968371 |
T |
|
| Q |
647 |
agtttcttg-aaaacaaagtggcaatagagctcacacgagcacaattttccgcagcacaagaggttggttttgctcctttaaggcttctatatttgggtt |
745 |
Q |
| |
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|||||||| |||| || || || |||||||||||||||||| |||| | ||||||||||||||||| || |||||| ||| |||| ||||||| |
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| T |
17968370 |
tgtttcttgaaaaataaggttgccatagagctcacacgagcagaattcgctaaagcacaagaggttggttatgttcctttcttacttatatagttgggtt |
17968271 |
T |
|
| Q |
746 |
cctgttgtatatt |
758 |
Q |
| |
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||||||||||||| |
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| T |
17968270 |
cctgttgtatatt |
17968258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 614 - 685
Target Start/End: Complemental strand, 16319371 - 16319300
Alignment:
| Q |
614 |
atatggctggagtatacttaatgctactgattcagtttcttgaaaacaaagtggcaatagagctcacacgag |
685 |
Q |
| |
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||||||||||| ||||||||||| ||||||||| |||||||||||||||||||| || || |||||||||| |
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| T |
16319371 |
atatggctggaatatacttaatgttactgattcgatttcttgaaaacaaagtggccatcgatctcacacgag |
16319300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 188
Target Start/End: Complemental strand, 17968880 - 17968785
Alignment:
| Q |
93 |
ttttgactatggattgatttattgcttgtagcatatatccttagactgcaaatacaggttttaattttgagtccaaaatagaaattgcttattatg |
188 |
Q |
| |
|
|||||| | |||||||||||||||||||| ||||||||| | | | |||||||||| || |||||||| ||||||| ||||||||| ||||| |
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| T |
17968880 |
ttttgaatttggattgatttattgcttgtggcatatatcatcatagtgcaaatacaagtgcaaattttgaatccaaaagttaaattgcttgttatg |
17968785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 8e-51; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 443 - 687
Target Start/End: Complemental strand, 32354627 - 32354385
Alignment:
| Q |
443 |
cttgcagatgagttagtgaagcttggaataactaattgtcttagaggtgaaattcattattcttattcaacctacaatgttcttacgccttcatgcnnnn |
542 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||| || || | |||||||| |||||||||||||||| |||||||| || ||| || ||||||| |
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| T |
32354627 |
cttgcagatgagttattgaagcttggaattactgatggtgtcagaggtgatattcattattcttattttacctacaagatttttatgctttcatgcaaac |
32354528 |
T |
|
| Q |
543 |
nnncgattctatatgaaacattgttgatctttcttgtttagcagaagtggatttggatcgctcttccatccatatggctggagtatacttaatgctactg |
642 |
Q |
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| |||| ||||||||| ||||||| ||||||| ||||||||||||||| ||| | | |||||| ||| ||||||||||||||||||||||||| || |
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| T |
32354527 |
aa-caattc-atatgaaaccttgttgaactttcttatttagcagaagtggacttgcaacactcttctatctatatggctggagtatacttaatgcttcta |
32354430 |
T |
|
| Q |
643 |
attcagtttcttgaaaacaaagtggcaatagagctcacacgagca |
687 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32354429 |
attcagtttcttgaaaacaaagtggccatagagctcacacgagca |
32354385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 82 - 238
Target Start/End: Complemental strand, 33580514 - 33580358
Alignment:
| Q |
82 |
acttttatttgttttgactatggattgatttattgcttgtagcatatatccttagactgcaaatacaggttttaattttgagtccaaaatagaaattgct |
181 |
Q |
| |
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||||||| || ||||| || | ||||||| ||||||||||||| || ||| ||||||||||||||||| | ||||||||| ||||||||| |||| ||| |
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| T |
33580514 |
acttttacttcttttggcttttgattgatctattgcttgtagcctacatcattagactgcaaatacagttgctaattttgaatccaaaatacaaatcgct |
33580415 |
T |
|
| Q |
182 |
tattatggtatatgaatcaaatatgtattcatatgctgtccaaattagtcactgatg |
238 |
Q |
| |
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| ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||| |
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| T |
33580414 |
tgttatggtatatgaatcaaatatgtattaatatgccgtccaaattagtcgctgatg |
33580358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 32355176 - 32354966
Alignment:
| Q |
25 |
gggatgcatataattcaaggttgttcaccaactgattttgctacgcgtgtttcaataacttttatttgttttgactatggattgatttattgcttgtagc |
124 |
Q |
| |
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||||||| ||||||||||||||||||| |||||| |||||||| |||||| |||| ||||| || ||||| || |||||||||||||||||||| || |
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|
| T |
32355176 |
gggatgcgtataattcaaggttgttcagcaactgtttttgctatttgtgtttgcataaattttacttcttttggctttggattgatttattgcttgtggc |
32355077 |
T |
|
| Q |
125 |
atatatccttagactgcaaatacaggttttaattttgagtccaaaatagaaattgcttattatggtatatgaatcaaatatgtattcatatgctgtccaa |
224 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||||| || |||||| ||| || |||| |||||||||||||||||||| ||||||||||||| |
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|
| T |
32355076 |
atatatcactagactgcaaatacaagggctaattttgaatcgaaaataaaaaatg---gctatgatatatgaatcaaatatgtatcaatatgctgtccaa |
32354980 |
T |
|
| Q |
225 |
attagtcactgatg |
238 |
Q |
| |
|
||||||| |||||| |
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|
| T |
32354979 |
attagtcgctgatg |
32354966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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