View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14431_low_3 (Length: 506)

Name: NF14431_low_3
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14431_low_3
NF14431_low_3
[»] chr2 (12 HSPs)
chr2 (16-481)||(14007479-14007944)
chr2 (276-386)||(45035155-45035265)
chr2 (162-263)||(20957437-20957538)
chr2 (277-386)||(45033361-45033470)
chr2 (165-263)||(20957612-20957710)
chr2 (278-386)||(17308689-17308797)
chr2 (311-386)||(1015756-1015831)
chr2 (274-380)||(3372458-3372564)
chr2 (165-273)||(17149055-17149163)
chr2 (268-371)||(33187188-33187291)
chr2 (316-386)||(30191620-30191690)
chr2 (167-207)||(8760002-8760042)
[»] chr3 (12 HSPs)
chr3 (162-380)||(26667004-26667223)
chr3 (162-290)||(25836367-25836495)
chr3 (282-386)||(27682197-27682301)
chr3 (311-386)||(41874545-41874620)
chr3 (282-386)||(28133726-28133830)
chr3 (165-272)||(9032830-9032937)
chr3 (162-259)||(548092-548187)
chr3 (276-386)||(4602293-4602403)
chr3 (196-264)||(43819944-43820012)
chr3 (276-386)||(4609105-4609215)
chr3 (282-379)||(26317951-26318048)
chr3 (276-317)||(27972591-27972632)
[»] chr5 (12 HSPs)
chr5 (162-387)||(6742425-6742653)
chr5 (276-386)||(10410798-10410908)
chr5 (162-273)||(4897423-4897532)
chr5 (152-259)||(21637272-21637381)
chr5 (276-375)||(10412371-10412470)
chr5 (169-290)||(33689869-33689990)
chr5 (282-386)||(8081508-8081612)
chr5 (311-386)||(25725808-25725883)
chr5 (162-271)||(33688153-33688262)
chr5 (311-386)||(25502025-25502100)
chr5 (279-386)||(25506938-25507045)
chr5 (313-380)||(40382763-40382830)
[»] chr8 (7 HSPs)
chr8 (164-386)||(35674837-35675058)
chr8 (268-386)||(30634229-30634347)
chr8 (281-373)||(35673345-35673437)
chr8 (165-262)||(29456284-29456381)
chr8 (311-386)||(1175148-1175223)
chr8 (281-378)||(1173513-1173610)
chr8 (162-197)||(35673477-35673512)
[»] chr7 (10 HSPs)
chr7 (162-273)||(29598097-29598208)
chr7 (152-273)||(21633313-21633436)
chr7 (311-379)||(29924665-29924733)
chr7 (152-273)||(21631352-21631467)
chr7 (162-273)||(21631122-21631225)
chr7 (294-379)||(21464528-21464615)
chr7 (210-291)||(3232944-3233025)
chr7 (169-263)||(21633093-21633179)
chr7 (152-237)||(9878298-9878384)
chr7 (210-259)||(29856101-29856150)
[»] chr6 (6 HSPs)
chr6 (162-271)||(30488432-30488541)
chr6 (268-387)||(15689026-15689145)
chr6 (162-235)||(25050859-25050932)
chr6 (226-358)||(9373599-9373730)
chr6 (268-379)||(34350341-34350452)
chr6 (162-242)||(26857816-26857895)
[»] chr4 (11 HSPs)
chr4 (165-290)||(42664932-42665057)
chr4 (276-380)||(28395559-28395667)
chr4 (166-273)||(10032679-10032785)
chr4 (162-234)||(42665175-42665247)
chr4 (162-273)||(18812662-18812774)
chr4 (319-387)||(4847687-4847755)
chr4 (152-235)||(18807515-18807599)
chr4 (212-263)||(5653307-5653358)
chr4 (162-273)||(8818744-8818853)
chr4 (163-202)||(19223142-19223181)
chr4 (198-276)||(8678562-8678640)
[»] scaffold0060 (1 HSPs)
scaffold0060 (152-262)||(9093-9205)
[»] chr1 (6 HSPs)
chr1 (166-273)||(1284831-1284937)
chr1 (268-387)||(44782182-44782301)
chr1 (282-386)||(46679708-46679812)
chr1 (187-273)||(33072760-33072845)
chr1 (163-273)||(10653488-10653594)
chr1 (162-257)||(41892084-41892178)
[»] scaffold0245 (2 HSPs)
scaffold0245 (166-273)||(9476-9582)
scaffold0245 (166-273)||(11098-11204)
[»] scaffold0229 (1 HSPs)
scaffold0229 (166-273)||(9804-9910)
[»] scaffold0160 (1 HSPs)
scaffold0160 (165-245)||(28412-28492)


Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 16 - 481
Target Start/End: Original strand, 14007479 - 14007944
Alignment:
Q  16 atcagtacaagcaaaagagggtatatgacttaatgacatcaccaacgtgcatgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagaca 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14007479 atcagtacaagcaaaagaggg-atatgacttaatgacatcaccaacgtgcatgtttgttaagaaatgaaaaaatccaagaggaaatgtagagagtagaca 14007577  T
Q  116 aagtataattagataagcatggaacaaattaagcatactattagagtagtgaataaaccatagttagttaatatgtaaactatggttagttggctggtta 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  14007578 aagtataattagataagcatggaacaaattaagcatactattagagtagtgaataaaccatagttagttaatatgtaaactatggttagttggttggtta 14007677  T
Q  216 ggtagttaagagttagttagacta----actcacccctataaataactctcatcattgtactattttcatatcttttattcatttctatctttgtcataa 311  Q
    ||||||||||||||||||||||||    |||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||   |    
T  14007678 ggtagttaagagttagttagactaacttactcacccatataaataactctcaccattgtactatttttatatcttttattcatttctatctatgtc---a 14007774  T
Q  312 ctcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaacacatgcaatcttctatcaattagtta 411  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  14007775 ctcctagagagaattagacaatccatctttccattgcatttgacctagaaccatggaatcctttgattcataacacatgcaatcttctatcaattggtta 14007874  T
Q  412 aactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaataacgtgttctagtttctct 481  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  14007875 aactacaacttgaatgatatatcaaacaaaaatgaccatgttgagagaaataacatgttctagtttctct 14007944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 45035155 - 45035265
Alignment:
Q  276 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 375  Q
    ||||| |||||||||||||||  |||||||| || |||||||||||||| || |||||| ||||||||||||||||||| ||| ||||||||||||||||    
T  45035155 tttcaaatcttttattcatttgcatctttgtgatgactcctagagagaactatacaatctatctttccattgcatttgatctagaaccatggaatccttt 45035254  T
Q  376 gattcctaaca 386  Q
    ||||| |||||    
T  45035255 gattcataaca 45035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 20957437 - 20957538
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    ||||||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||||||||||||||||| |||    
T  20957437 tagtgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtct 20957536  T
Q  262 ca 263  Q
    ||    
T  20957537 ca 20957538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 277 - 386
Target Start/End: Original strand, 45033361 - 45033470
Alignment:
Q  277 ttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttg 376  Q
    ||||||||||||||||||||  |||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||| ||| |||||||||||| ||||    
T  45033361 ttcatatcttttattcatttgcatctttgtgatgactcctagagaaaattatacaatctatctttccattgcatttgatctagaaccatggaatcttttg 45033460  T
Q  377 attcctaaca 386  Q
    |||| |||||    
T  45033461 attcataaca 45033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 165 - 263
Target Start/End: Original strand, 20957612 - 20957710
Alignment:
Q  165 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 263  Q
    |||||||||||||||||| | ||||||||| ||||||||||| | | |||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  20957612 tgaataaaccatagttaggttatatgtaaattatggttagttagttagttaggtagttgtgagttagttagactaactcacccctataaataagtctca 20957710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 278 - 386
Target Start/End: Original strand, 17308689 - 17308797
Alignment:
Q  278 tcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttga 377  Q
    ||||||||||||| || || | |||| || || |||||||||| ||||||||||||| ||||||||||||||||||| ||| ||| ||||||||||||||    
T  17308689 tcatatcttttatacaattgtttcttggtaatgactcctagagtgaattacacaatctatctttccattgcatttgatctagaacaatggaatcctttga 17308788  T
Q  378 ttcctaaca 386  Q
    ||| |||||    
T  17308789 ttcataaca 17308797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 1015756 - 1015831
Alignment:
Q  311 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 386  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  1015756 actccaagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 1015831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 274 - 380
Target Start/End: Complemental strand, 3372564 - 3372458
Alignment:
Q  274 attttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 373  Q
    |||||||||| |||||||||||| |||||||||  | ||||| ||||||||||| | |||| |||||||||||| |||||||||| ||| |||||||| |    
T  3372564 attttcatatattttattcatttttatctttgtggtgactcccagagagaattatagaatctatctttccattgtatttgacctagaactatggaatctt 3372465  T
Q  374 ttgattc 380  Q
    |||||||    
T  3372464 ttgattc 3372458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 273
Target Start/End: Complemental strand, 17149163 - 17149055
Alignment:
Q  165 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 264  Q
    |||||||||||||||||||| ||| ||||| ||||||||||||| || ||| ||| ||| |||| ||||||||||| ||| |||| ||| |||| |||||    
T  17149163 tgaataaaccatagttagttgataggtaaattatggttagttggttgtttaagtaattaggagtcagttagactaattcatccctgtaagtaaccctcat 17149064  T
Q  265 cattgtact 273  Q
    |||||||||    
T  17149063 cattgtact 17149055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 371
Target Start/End: Complemental strand, 33187291 - 33187188
Alignment:
Q  268 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 367  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||| |||||||||||| ||||||||||| ||||||||||| ||| ||||    
T  33187291 tgtactatttcattatcttttatacaattgtttcttggtaatgactcatagagataattacacaatctatctttccattacatttgacctagaacaatgg 33187192  T
Q  368 aatc 371  Q
    ||||    
T  33187191 aatc 33187188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 316 - 386
Target Start/End: Original strand, 30191620 - 30191690
Alignment:
Q  316 tagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 386  Q
    |||||||||||| | |||| |||||| ||||| |||||| ||| ||||||||||||||||||||| |||||    
T  30191620 tagagagaattatataatctatcttttcattgtatttgatctagaaccatggaatcctttgattcataaca 30191690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 207
Target Start/End: Original strand, 8760002 - 8760042
Alignment:
Q  167 aataaaccatagttagttaatatgtaaactatggttagttg 207  Q
    |||||| |||| |||||| ||||||||||||||||||||||    
T  8760002 aataaatcataattagttgatatgtaaactatggttagttg 8760042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 7e-78; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 162 - 380
Target Start/End: Complemental strand, 26667223 - 26667004
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26667223 tagtgaattaaccatagttagttaatatgtaaattatggttagttggttagttaggtagttaagagttagttagactaactcacccctataaataactct 26667124  T
Q  262 catcattgtactattttcatatcttttattca-tttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaa 360  Q
    || |||||||| |||||||||||||||||||| ||||||||||||| || |||| ||| ||||||||||||||| | |||||||| |||||||| ||| |    
T  26667123 caccattgtaccattttcatatcttttattcattttctatctttgtgatgactcttagggagaattacacaatctacctttccatcgcatttgatctaga 26667024  T
Q  361 accatggaatcctttgattc 380  Q
    |||||| |||||||||||||    
T  26667023 accatgaaatcctttgattc 26667004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 25836367 - 25836495
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    ||||||||||||||||||||||| |||  |||||||||| ||||||| | |||||||||||| |||||||||||||||  ||| || |||||||||||||    
T  25836367 tagtgaataaaccatagttagttgatagataaactatggctagttggttagttaggtagttaggagttagttagactagttcatccttataaataactct 25836466  T
Q  262 catcattgtactattttcatatcttttat 290  Q
    || ||||||||| | ||  ||||||||||    
T  25836467 caccattgtactctcttgttatcttttat 25836495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 27682197 - 27682301
Alignment:
Q  282 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 381  Q
    |||||||||||||||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  27682197 atcttttattcatttgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 27682296  T
Q  382 taaca 386  Q
    |||||    
T  27682297 taaca 27682301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 41874545 - 41874620
Alignment:
Q  311 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 386  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  41874545 actcctagagagaattacaaaatctatctttccattgcatttgacctagaaccatggaatcctttgattcataaca 41874620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 28133726 - 28133830
Alignment:
Q  282 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 381  Q
    |||||||||||| ||  |||||||| || |||||||||||||| ||||||||  | ||||||||||||||||| ||| |||||||||||||||||||||     
T  28133726 atcttttattcaattgcatctttgtgatgactcctagagagaactacacaatttacctttccattgcatttgatctagaaccatggaatcctttgattca 28133825  T
Q  382 taaca 386  Q
    |||||    
T  28133826 taaca 28133830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 165 - 272
Target Start/End: Complemental strand, 9032937 - 9032830
Alignment:
Q  165 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 264  Q
    |||||||| ||||||||||| ||||| ||||||||||||| ||| |||||  ||||||||||||||||||||||||||  ||| |||||||| || |||     
T  9032937 tgaataaatcatagttagttgatatgaaaactatggttagctggttggttgagtagttaagagttagttagactaactttcccttataaatagctttcac 9032838  T
Q  265 cattgtac 272  Q
    ||||||||    
T  9032837 cattgtac 9032830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 162 - 259
Target Start/End: Original strand, 548092 - 548187
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataact 259  Q
    ||||||||||| |||| |||| ||||  |||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  548092 tagtgaataaatcatatttagataatg-gtaaactatgattagttggttggttaggtagttaagagttagttagactaactca-cactataaataact 548187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 4602293 - 4602403
Alignment:
Q  276 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 375  Q
    |||||||||||||||| | ||  |||||||| || |||| ||||||||| || |||||  | ||||||||||||||||| ||| ||||||||||||||||    
T  4602293 tttcatatcttttatttaattgcatctttgttatgactcatagagagaactatacaatttacctttccattgcatttgatctagaaccatggaatccttt 4602392  T
Q  376 gattcctaaca 386  Q
    ||||| |||||    
T  4602393 gattcataaca 4602403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 43820012 - 43819944
Alignment:
Q  196 tatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 264  Q
    |||| |||||||| ||||||||||||||| ||||||| |||||||||||| |||||||||||| |||||    
T  43820012 tatgattagttggttggttaggtagttaaaagttagtaagactaactcactcctataaataaccctcat 43819944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 4609105 - 4609215
Alignment:
Q  276 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 375  Q
    |||||||||||||||||| ||  |||||||| || ||| |||||||||| || |||||  | ||||| ||||||||||| ||| ||| || |||||||||    
T  4609105 tttcatatcttttattcaattgcatctttgtgatgactgctagagagaactatacaatttacctttcaattgcatttgatctagaacaattgaatccttt 4609204  T
Q  376 gattcctaaca 386  Q
    ||||| |||||    
T  4609205 gattcataaca 4609215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 379
Target Start/End: Complemental strand, 26318048 - 26317951
Alignment:
Q  282 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 379  Q
    |||||||||||||||||||  || | || ||||||  |||| | || |||||| |||||| ||||| ||||||  || ||||||| ||||||||||||    
T  26318048 atcttttattcatttctattgttctaatgactcctcaagagcaataaacaatctatcttttcattgtatttgatttagaaccatgaaatcctttgatt 26317951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 317
Target Start/End: Original strand, 27972591 - 27972632
Alignment:
Q  276 tttcatatcttttattcatttctatctttgtcataactccta 317  Q
    ||||||||||||||||||||||||| ||||| || |||||||    
T  27972591 tttcatatcttttattcatttctatatttgtgatgactccta 27972632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 162 - 387
Target Start/End: Original strand, 6742425 - 6742653
Alignment:
Q  162 tagtgaataaacca---tagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataac 258  Q
    ||||||||||||||   |||||| ||||||| |||| ||||||||||||| |||||||||| |||||||||||||| ||||| | ||  |||||||||||    
T  6742425 tagtgaataaaccaatatagttaattaatatataaattatggttagttggttggttaggtaattaagagttagttaaactaatttacttctataaataac 6742524  T
Q  259 tctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgaccta 358  Q
    |||||  ||||||||||||| |||| ||||||| |||||||||||||| || |||| ||||||||| ||||||||| ||||||||||||||||||| |||    
T  6742525 tctcactattgtactattttgatattttttatttatttctatctttgtgatgactcgtagagagaaatacacaatctatctttccattgcatttgatcta 6742624  T
Q  359 aaaccatggaatcctttgattcctaacac 387  Q
     ||| |||||||| |||||||| ||||||    
T  6742625 gaactatggaatcgtttgattcataacac 6742653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 276 - 386
Target Start/End: Original strand, 10410798 - 10410908
Alignment:
Q  276 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 375  Q
    ||||| |||||||||||||||  |||||||  || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10410798 tttcacatcttttattcatttgcatctttgggatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaatccttt 10410897  T
Q  376 gattcctaaca 386  Q
    ||||| |||||    
T  10410898 gattcataaca 10410908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 4897532 - 4897423
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    ||||||||||||||||||||| ||||  ||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4897532 tagtgaataaaccatagttagataatg-gtaaactatggttagttggttgattaggtagttaagagttagttagactaactca-ccctataaataactct 4897435  T
Q  262 catcattgtact 273  Q
    ||  ||||||||    
T  4897434 caatattgtact 4897423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 152 - 259
Target Start/End: Complemental strand, 21637381 - 21637272
Alignment:
Q  152 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 249  Q
    ||||||||||||  ||||||||||||||||||||| |||||  |||||| ||||||||| |||||||||||||| |||||||||| |||||||||||| |    
T  21637381 actattagagtatagtgaataaaccatagttagtttatatgagaactatagttagttggttggttaggtagttaggagttagttacactaactcaccctt 21637282  T
Q  250 ataaataact 259  Q
    ||||||||||    
T  21637281 ataaataact 21637272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 276 - 375
Target Start/End: Original strand, 10412371 - 10412470
Alignment:
Q  276 tttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatccttt 375  Q
    |||||||||||||||||||||  |||||||| |||| || |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||    
T  10412371 tttcatatcttttattcatttgcatctttgtgataattcttagagaaaattacacaatctatctttcgattgcatttgacctaaaaccatgaaatccttt 10412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 169 - 290
Target Start/End: Original strand, 33689869 - 33689990
Alignment:
Q  169 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcatt 268  Q
    |||||||||||||||||||| ||||||||||| || |||| | ||||||||||||||||| | |||||||||||  ||| |||||||| ||||||  |||    
T  33689869 taaaccatagttagttaataagtaaactatggataattggttagttaggtagttaagagtcaattagactaacttgcccttataaatagctctcactatt 33689968  T
Q  269 gtactattttcatatcttttat 290  Q
    ||||||||||  ||||||||||    
T  33689969 gtactattttgttatcttttat 33689990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 8081508 - 8081612
Alignment:
Q  282 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 381  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||     
T  8081508 atcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatggaaccctttgattca 8081607  T
Q  382 taaca 386  Q
    |||||    
T  8081608 taaca 8081612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 25725883 - 25725808
Alignment:
Q  311 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 386  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| |||||    
T  25725883 actcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattcataaca 25725808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 33688153 - 33688262
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||| | |||||||||| |||||||||| | |||||||| |||| |||| |||| ||||    
T  33688153 tagtgattaaaccatagttagttaatatgtaaattatggttggttagttggttaggtatttaagagttactaagactaacccacctctattaatagctct 33688252  T
Q  262 catcattgta 271  Q
    || |||||||    
T  33688253 caccattgta 33688262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 311 - 386
Target Start/End: Complemental strand, 25502100 - 25502025
Alignment:
Q  311 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 386  Q
    |||||||||||||||||||||||| || |||||||||||||||| ||| |||||||||||||| |||||| |||||    
T  25502100 actcctagagagaattacacaatctatatttccattgcatttgatctagaaccatggaatcctctgattcataaca 25502025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 279 - 386
Target Start/End: Complemental strand, 25507045 - 25506938
Alignment:
Q  279 catatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 378  Q
    ||||| |||||| || || | ||||||| || | ||| ||||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||| ||    
T  25507045 catattttttatacaattgtttctttgtaatgaatcccagagagaattacataatctatctttccattgcatttgatctaaaaccatggaatccttttat 25506946  T
Q  379 tcctaaca 386  Q
    || |||||    
T  25506945 tcataaca 25506938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 313 - 380
Target Start/End: Complemental strand, 40382830 - 40382763
Alignment:
Q  313 tcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattc 380  Q
    |||||||||||||||||||||  ||||||||||||||||||||||| ||| ||| |||||||||||||    
T  40382830 tcctagagagaattacacaatttatctttccattgcatttgacctagaacaatgtaatcctttgattc 40382763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 5e-51; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 164 - 386
Target Start/End: Complemental strand, 35675058 - 35674837
Alignment:
Q  164 gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 263  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  35675058 gtgaataaatcatagttagttaatatgtaaactatggttagttggttagttagatagttaggagttagttagactaactcactcctataaataactctca 35674959  T
Q  264 tc-attgtactattttca-tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaa 361  Q
     | ||||   |||| ||| | |||   |||||||| ||||||||| || |||||||||||||||||||||||| | |||||||||||||||||| || ||    
T  35674958 actattg---tattctcattgtctaaaattcatttatatctttgtgatgactcctagagagaattacacaatctacctttccattgcatttgacttagaa 35674862  T
Q  362 ccatggaatcctttgattcctaaca 386  Q
    ||||| ||||||  ||||| |||||    
T  35674861 ccatgcaatcctcagattcgtaaca 35674837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 268 - 386
Target Start/End: Complemental strand, 30634347 - 30634229
Alignment:
Q  268 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 367  Q
    ||||||||||   |||||||||| || || | |||| || || |||| |||||||||||||| |||| |||||||||||||||||||||||||||||| |    
T  30634347 tgtactatttcattatcttttatacaattgtttcttagtaatgactcatagagagaattacagaatctatctttccattgcatttgacctaaaaccatag 30634248  T
Q  368 aatcctttgattcctaaca 386  Q
    ||||||||||||| |||||    
T  30634247 aatcctttgattcataaca 30634229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 281 - 373
Target Start/End: Complemental strand, 35673437 - 35673345
Alignment:
Q  281 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcct 373  Q
    |||||||||||||||| ||||| ||| || | || |||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||    
T  35673437 tatcttttattcatttatatctctgtgatgattcatagagagaattatacaatctatctttccattgcatttgacttagaaccatggaatcct 35673345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 165 - 262
Target Start/End: Complemental strand, 29456381 - 29456284
Alignment:
Q  165 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctc 262  Q
    ||||| || |||||||||| |||| ||||||||| |||||||   |||||||||||||| |||||| |||||||||||||||| | ||||||||||||    
T  29456381 tgaatcaatcatagttagtcaataagtaaactatagttagttaattggttaggtagttatgagttatttagactaactcacccttgtaaataactctc 29456284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 1175148 - 1175223
Alignment:
Q  311 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaaca 386  Q
    ||||||||| | |||||||||||| |||||| |||| ||||||||||| |||||| ||||||||| |||| |||||    
T  1175148 actcctagaaaaaattacacaatctatcttttcattacatttgacctagaaccatagaatcctttaattcataaca 1175223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 378
Target Start/End: Original strand, 1173513 - 1173610
Alignment:
Q  281 tatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgat 378  Q
    |||||||||| || || | |||| || || ||||||||||||||||| |||||| || ||| |||||||||||| ||| ||  |||||||||||||||    
T  1173513 tatcttttatacaattgtttcttggtaatgactcctagagagaattatacaatctattttttcattgcatttgatctagaattatggaatcctttgat 1173610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 197
Target Start/End: Complemental strand, 35673512 - 35673477
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaacta 197  Q
    ||||||||||||||||||||||||||||||||||||    
T  35673512 tagtgaataaaccatagttagttaatatgtaaacta 35673477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 29598208 - 29598097
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| |||| |||||||||||||||||||||||||||||||||||||    
T  29598208 tagtgaataaaccatagttagttaatatgtaaactatggttagtttgtaggttaggtggttaggagttagttagactaactcacccctataaataactct 29598109  T
Q  262 catcattgtact 273  Q
    || |||| ||||    
T  29598108 caccattatact 29598097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 21633436 - 21633313
Alignment:
Q  152 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 249  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||| |||| |||||||||| ||||| ||||| ||    
T  21633436 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttaggtggttaggagttagttatactaattcaccact 21633337  T
Q  250 ataaataactctcatcattgtact 273  Q
    |||||||||| ||| |||||||||    
T  21633336 ataaataactatcaccattgtact 21633313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 311 - 379
Target Start/End: Original strand, 29924665 - 29924733
Alignment:
Q  311 actcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 379  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  29924665 actcctagagagaattacacaatctatctttccattgcatttgacctagaactatggaatcctttgatt 29924733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 152 - 273
Target Start/End: Complemental strand, 21631467 - 21631352
Alignment:
Q  152 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 249  Q
    ||||||||||||  |||| |||||||| ||||||| |||||||||||||||||||||||  |||||||        ||||||||||||||||||||||||    
T  21631467 actattagagtatagtgagtaaaccattgttagttgatatgtaaactatggttagttggtaggttagg--------agttagttagactaactcacccct 21631376  T
Q  250 ataaataactctcatcattgtact 273  Q
    ||||||||| |||| |||||||||    
T  21631375 ataaataaccctcaccattgtact 21631352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 21631225 - 21631122
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||  ||||||        |||||||||||||||||||||||||||||||||| ||    
T  21631225 tagtgagtaaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactaactcacccctataaataaccct 21631134  T
Q  262 catcattgtact 273  Q
    || || ||||||    
T  21631133 caccagtgtact 21631122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 294 - 379
Target Start/End: Original strand, 21464528 - 21464615
Alignment:
Q  294 tttctatctttgtcataactcctagag--agaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgatt 379  Q
    |||||| |||||| || ||||||||||  |||||||||||||| ||||||||||||||||||| ||| ||||||||||| ||||||||    
T  21464528 tttctacctttgtaatgactcctagagagagaattacacaatctatctttccattgcatttgatctagaaccatggaattctttgatt 21464615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 210 - 291
Target Start/End: Original strand, 3232944 - 3233025
Alignment:
Q  210 tggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtactattttcatatcttttatt 291  Q
    |||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||| | | ||  |||||||||||    
T  3232944 tggttaggtagttaagagtttgttacactaactcatccttataaataactctcatcattgtattttcttattatcttttatt 3233025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 263
Target Start/End: Complemental strand, 21633179 - 21633093
Alignment:
Q  169 taaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctca 263  Q
    |||||||||||||||| |||||||||||||||||||||||  ||||||        ||||||||||||||| |||||||||||||||||| ||||    
T  21633179 taaaccatagttagttgatatgtaaactatggttagttggtaggttag--------gagttagttagactatctcacccctataaataaccctca 21633093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 152 - 237
Target Start/End: Complemental strand, 9878384 - 9878298
Alignment:
Q  152 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagac 237  Q
    ||||||||||||  ||||||||||||||| |||||||||| |||||||||||||||||  | ||||| |||||| |||||||||||||    
T  9878384 actattagagtatagtgaataaaccataggtagttaatatataaactatggttagttgtat-gttagatagttaggagttagttagac 9878298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 259
Target Start/End: Complemental strand, 29856150 - 29856101
Alignment:
Q  210 tggttaggtagttaagagttagttagactaactcacccctataaataact 259  Q
    |||||||||||||| ||||||||||||| |||||||  ||||||||||||    
T  29856150 tggttaggtagttaggagttagttagaccaactcactactataaataact 29856101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 162 - 271
Target Start/End: Original strand, 30488432 - 30488541
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  30488432 tagtgaataaaccatagttagttaatatgtaaattatggtttgttggttggttagatagttaaaagttagttagactaactcacccctataaatagctct 30488531  T
Q  262 catcattgta 271  Q
    || |||||||    
T  30488532 caccattgta 30488541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 268 - 387
Target Start/End: Original strand, 15689026 - 15689145
Alignment:
Q  268 tgtactattttc-atatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatg 366  Q
    |||||||||||| || | |||||||||||||||||||||| || |||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||    
T  15689026 tgtactattttctatcttttttattcatttctatctttgtgatgactc-tagagagaattacacaatctatctttccattgcatttgacctagaatcatg 15689124  T
Q  367 gaatcctttgattcctaacac 387  Q
    |||||||||||||| ||||||    
T  15689125 gaatcctttgattcataacac 15689145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 25050859 - 25050932
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 235  Q
    ||||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  25050859 tagtgaataaaccatagttagataatatgtaaactatggttagttacttggttaggtagttaagagttagttag 25050932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 226 - 358
Target Start/End: Complemental strand, 9373730 - 9373599
Alignment:
Q  226 agttagttagactaactcacccctataaataactctcatcattgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaat 325  Q
    ||||||||||||| ||  || | ||||||||||||| |  |||||||| | | || ||||||||||||||| ||||||||| || ||||||| ||| |||    
T  9373730 agttagttagacttaccgactcttataaataactcttacaattgtactctct-cacatcttttattcatttatatctttgttatgactcctatagaaaat 9373632  T
Q  326 tacacaatccatctttccattgcatttgaccta 358  Q
    |||||| || |||||||||||||||||||||||    
T  9373631 tacacattctatctttccattgcatttgaccta 9373599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 268 - 379
Target Start/End: Complemental strand, 34350452 - 34350341
Alignment:
Q  268 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 367  Q
    ||||||||||   |||||||||| || || | |||| || || ||||||| ||||||||||| || | || ||||| ||| |||||||||| ||||||||    
T  34350452 tgtactatttcactatcttttatacaattgtttcttagtaatgactcctaaagagaattacataaactatttttccgttgtatttgacctagaaccatgg 34350353  T
Q  368 aatcctttgatt 379  Q
    ||||||||||||    
T  34350352 aatcctttgatt 34350341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 242
Target Start/End: Original strand, 26857816 - 26857895
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaact 242  Q
    |||||||||| |||||||||| | ||  ||||| ||  |||| |||| |||||||||||||||||||||||||||||||||    
T  26857816 tagtgaataagccatagttagatgatg-gtaaattagagttaattggttggttaggtagttaagagttagttagactaact 26857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 165 - 290
Target Start/End: Original strand, 42664932 - 42665057
Alignment:
Q  165 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcat 264  Q
    ||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||  |||||     
T  42664932 tgaataaaccatagttagttaatatgtaaactacggttagttggttgtttaggtagttaagagttagttagactaactcacccttataaatagttctcac 42665031  T
Q  265 cattgtactattttcatatcttttat 290  Q
     |||||||||| ||  ||||||||||    
T  42665032 aattgtactatcttgttatcttttat 42665057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 276 - 380
Target Start/End: Complemental strand, 28395667 - 28395559
Alignment:
Q  276 tttcatatcttttattcatttctatct----ttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatc 371  Q
    |||||||||||||||||||||||||||    |||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28395667 tttcatatcttttattcatttctatctatctttgtgatgactcctagagagaattacacaatctatctttccattgcatttgacctaaaaccatggaatc 28395568  T
Q  372 ctttgattc 380  Q
    |||||||||    
T  28395567 ctttgattc 28395559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 166 - 273
Target Start/End: Complemental strand, 10032785 - 10032679
Alignment:
Q  166 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 265  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||  |||||||||||||| ||||||||||||||||||      
T  10032785 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagtcggttagactaactca-ccctataaataactctcact 10032687  T
Q  266 attgtact 273  Q
    ||||||||    
T  10032686 attgtact 10032679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 234
Target Start/End: Complemental strand, 42665247 - 42665175
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta 234  Q
    ||||||||||||||||||||||||||||||||| |||||||||||   || ||||||||||||||||||||||    
T  42665247 tagtgaataaaccatagttagttaatatgtaaattatggttagttatttgtttaggtagttaagagttagtta 42665175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 18812774 - 18812662
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagtta--gactaactcacccctataaataact 259  Q
    |||||||||||||||| |||| |||||||||||||||||||||||   | |||||||||||||||||||||||   ||||||||| | ||||||||| ||    
T  18812774 tagtgaataaaccataattagataatatgtaaactatggttagttacttagttaggtagttaagagttagttacgaactaactca-ctctataaatatct 18812676  T
Q  260 ctcatcattgtact 273  Q
    ||||  ||||||||    
T  18812675 ctcactattgtact 18812662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 319 - 387
Target Start/End: Complemental strand, 4847755 - 4847687
Alignment:
Q  319 agagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcctaacac 387  Q
    ||||||||||| |||| ||||||||||| ||||||||||| |||||||||||||||| |||| ||||||    
T  4847755 agagaattacaaaatctatctttccattacatttgacctagaaccatggaatcctttaattcataacac 4847687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 152 - 235
Target Start/End: Complemental strand, 18807599 - 18807515
Alignment:
Q  152 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttag 235  Q
    ||||||||||||  ||||||||||||||  ||| |||||||||||||||||||||||   ||||||||||| ||||||||||||||    
T  18807599 actattagagtatagtgaataaaccataactagataatatgtaaactatggttagttacttggttaggtag-taagagttagttag 18807515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 5653358 - 5653307
Alignment:
Q  212 gttaggtagttaagagttagttagactaactcacccctataaataactctca 263  Q
    |||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  5653358 gttaggtagttaggagttagttatactaactcacccctataaataagtctca 5653307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 162 - 273
Target Start/End: Complemental strand, 8818853 - 8818744
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactct 261  Q
    ||||||||||| ||| ||||||||||| ||||||||  ||| ||| | |||||| |||||||| | ||||||||||||||||| |  |||||| ||||||    
T  8818853 tagtgaataaatcatggttagttaata-gtaaactagagtttgtttgttggttaagtagttaaaaattagttagactaactcatctttataaa-aactct 8818756  T
Q  262 catcattgtact 273  Q
     |||||| ||||    
T  8818755 tatcattatact 8818744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 163 - 202
Target Start/End: Complemental strand, 19223181 - 19223142
Alignment:
Q  163 agtgaataaaccatagttagttaatatgtaaactatggtt 202  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  19223181 agtgaataaaccatagttagttaatatataaactatggtt 19223142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 8678562 - 8678640
Alignment:
Q  198 tggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtactatt 276  Q
    ||||| ||||| ||| ||||||||||  |||||||||| ||||| ||||||||||||||||| |||  ||| |||||||    
T  8678562 tggttggttggttggctaggtagttagcagttagttagtctaacccacccctataaataactttcactattatactatt 8678640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 9205 - 9093
Alignment:
Q  152 actattagagta--gtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccct 249  Q
    ||||||||||||  ||||||||||||||||||||| |||||| |||||||||||||||  |||||||||||||| |||||||||| ||||||||||||||    
T  9205 actattagagtatagtgaataaaccatagttagtttatatgtgaactatggttagttgtttggttaggtagttaggagttagttacactaactcacccct 9106  T
Q  250 ataaataactctc 262  Q
    |||||||||||||    
T  9105 ataaataactctc 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 1284831 - 1284937
Alignment:
Q  166 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 265  Q
    ||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  1284831 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcact 1284929  T
Q  266 attgtact 273  Q
    ||||||||    
T  1284930 attgtact 1284937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 268 - 387
Target Start/End: Complemental strand, 44782301 - 44782182
Alignment:
Q  268 tgtactattttcatatcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatgg 367  Q
    ||||||||||   |||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||    
T  44782301 tgtactatttcattatcttttatacaattgtttcttagtaatgactcctagagagaattacacaatctatctttccattgcatttgacctagaaccatgg 44782202  T
Q  368 aatcctttgattcctaacac 387  Q
    |||||||| |||| ||||||    
T  44782201 aatcctttaattcataacac 44782182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 46679708 - 46679812
Alignment:
Q  282 atcttttattcatttctatctttgtcataactcctagagagaattacacaatccatctttccattgcatttgacctaaaaccatggaatcctttgattcc 381  Q
    ||||||||| || || | |||| || || |||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||     
T  46679708 atcttttatacaattgtttcttggtaatgactcctagagagaattacacaatctatctttccattgcatttgatctagaaccatggaatcctttgattca 46679807  T
Q  382 taaca 386  Q
    |||||    
T  46679808 taaca 46679812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 187 - 273
Target Start/End: Original strand, 33072760 - 33072845
Alignment:
Q  187 tatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatcattgtact 273  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||||||  ||||||||    
T  33072760 tatgtaaactatggttagttggttggttaggtagttaagagttagttag-ctgactcacccttataaataactctcactattgtact 33072845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 10653488 - 10653594
Alignment:
Q  163 agtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctc 262  Q
    ||||||||||  |||||||||| ||| ||||| |||||||||||||    |||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  10653488 agtgaataaagtatagttagtttatacgtaaattatggttagttgg----ttaggtggttaagagttagttagactaactcacccctgtaaatagctctc 10653583  T
Q  263 atcattgtact 273  Q
    |  ||||||||    
T  10653584 acaattgtact 10653594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 41892084 - 41892178
Alignment:
Q  162 tagtgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataa 257  Q
    |||||||||||||| |||||||| ||| || || |||| |||||||| |||||||||||||  |||||||||| ||||||||||||||||||||||    
T  41892084 tagtgaataaacca-agttagttgataggtgaagtatgattagttggttggttaggtagttgggagttagttatactaactcacccctataaataa 41892178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 9476 - 9582
Alignment:
Q  166 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 265  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||      
T  9476 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcact 9574  T
Q  266 attgtact 273  Q
    ||||||||    
T  9575 attgtact 9582  T

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Target: scaffold0245; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 11098 - 11204
Alignment:
Q  166 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 265  Q
    ||||||||||||||||||| | || |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||      
T  11098 gaataaaccatagttagttgagatataaactatggttagttggttggttaggtagttaagagttagttagactaactca-ccctataaataactatcact 11196  T
Q  266 attgtact 273  Q
    ||||||||    
T  11197 attgtact 11204  T

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Target: scaffold0229 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 166 - 273
Target Start/End: Original strand, 9804 - 9910
Alignment:
Q  166 gaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcacccctataaataactctcatc 265  Q
    ||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| |||      
T  9804 gaataaaccatagttagttgagatgtaaactatggttagttggttggttaggtagttaagtgttagttagactaactca-ccctataaataactatcact 9902  T
Q  266 attgtact 273  Q
    ||||||||    
T  9903 attgtact 9910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 28412 - 28492
Alignment:
Q  165 tgaataaaccatagttagttaatatgtaaactatggttagttggctggttaggtagttaagagttagttagactaactcac 245  Q
    |||||||||||||||||||| ||| ||||||||||||||||||| ||||||   |||||||||||||||||| ||||||||    
T  28412 tgaataaaccatagttagttgataggtaaactatggttagttggttggttatacagttaagagttagttagattaactcac 28492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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