View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14431_low_4 (Length: 470)
Name: NF14431_low_4
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14431_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 57 - 456
Target Start/End: Original strand, 29613100 - 29613498
Alignment:
| Q |
57 |
tacatgaaacaaattctataagtgttgtagcattgtaggggattgtttaatccatatatatatggacaatggaaatagcaagactggtatttggacataa |
156 |
Q |
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| T |
29613100 |
tacatgaaacaaattctataagtgttgtagcattgtaagggattgtttaatccatatatatatggacaatggaaataacaagactggtatttgggcataa |
29613199 |
T |
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| Q |
157 |
tttaacagggtaaaatacacatttttgtgttcgaattccgaggagaaagaaataattaatataaaattggaaaccatatagctttgctcgaagaattagg |
256 |
Q |
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| T |
29613200 |
tttaacagggtaaaatacacatttttgtgttcgaattc-gaggagaaagaaataattaatataaaattggaaaccatatagctttgctcgaagaattagg |
29613298 |
T |
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| Q |
257 |
atcttctccattttctctctccattatcatagagaatcactatgaatccctctatcattagtcttcctgtttcttgctctttctcatactcaagctttga |
356 |
Q |
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| T |
29613299 |
atcttctccattttctctctccattatcatagagaatcactatgaatccctctatcattagtcttcctgtttcttgctctttctcatactcaagctttga |
29613398 |
T |
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| Q |
357 |
aaattcataatgatgaattttctcaaggctttatatatagccactaaccaaagaatgagttagttacaaccaacctaacgaaacaattaacagctgagat |
456 |
Q |
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| T |
29613399 |
aaattcataatgatgaattttctcaaggctttatatatagccactaaccaaagaatgagttagttacaaccaacctaacgaaacaattaacagctgagat |
29613498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 29613047 - 29613090
Alignment:
| Q |
19 |
agattccataacagaggttgctagtggtggaggtgatctacatg |
62 |
Q |
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| T |
29613047 |
agattccataacagaggttgctagtgatggaggtgatctacatg |
29613090 |
T |
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