View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14431_low_5 (Length: 435)
Name: NF14431_low_5
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14431_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 78 - 419
Target Start/End: Original strand, 32094572 - 32094913
Alignment:
| Q |
78 |
caaaatgtcttgtgcagtactcaaaatccatgtcaggatctttgtaccaaaagccaaaacttgggaaccgtggcattggaaacggaatgcgagcgatatt |
177 |
Q |
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| T |
32094572 |
caaaatgtcttgtgcagtactcaaaatccatgtcaggatctttgtaccaaaagccaaaacttacgaaccgtggcattggaaacggaatgcgagcaatatt |
32094671 |
T |
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| Q |
178 |
tttagaatcaagtcatggatcatgcggtactggcgtatttttacctcaaagagcagacacgaagttccaatcacgaaaaaagccaggttgatatatgttg |
277 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32094672 |
tttagaatcaagtcatggatcatgcggtacaggcgtatttttacctcaaagagcagacacgaagttccaaccacgaaaaaagccaggttgatatatgttg |
32094771 |
T |
|
| Q |
278 |
cttgatcacattgaaatggaagttaattcttacatggaaaaagtcaattttttcatgttccaatgcaatattttcgcgattttaagaagttatataatga |
377 |
Q |
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||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32094772 |
cttgatcactttgaaatggaagttaattcttgcatggaaaaagccaattttttcacattccaatgcaatattttcgcgattttaagaagttatataatga |
32094871 |
T |
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| Q |
378 |
aatctttgtttaataaaaagttatatttgttttgcagcttgt |
419 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32094872 |
aatctttgtttaataaagagttatatttgttttgcagcttgt |
32094913 |
T |
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