View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14431_low_6 (Length: 401)
Name: NF14431_low_6
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14431_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Complemental strand, 7481893 - 7481521
Alignment:
| Q |
18 |
atttcatgatttaattcatgcatttgatgattgtcgagcataaaacctgaattggactaattgtgttcaccatatttgtagtgagataagagttaatcgt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
7481893 |
atttcatgatttaattcatgcatttgatgattgtcgaacagaaaacctgaattggactaattgtgttcaccatgtttgtagtgagataagagttaatcgt |
7481794 |
T |
|
| Q |
118 |
ttaaccggtgattgtcatttcaaacgggaacttctacgaggaattttgacaataccaggcacgaaccagaatgcatcaaaagaagagttttgatatcatt |
217 |
Q |
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|||| | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7481793 |
ttaagcagtgattgtcatttcaaacgggaacttctacgaggaattttgaaaataccagacacgaaccagaatgcatcaaaagaagagttttgatatcatt |
7481694 |
T |
|
| Q |
218 |
gtctgcaaatccgttttgcacaagttcagatgctaaaaaactataggttgttagttactcacatatagtatagcaagcattatttcattctttggtttta |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
7481693 |
gtctccaaatccgttttgcacaagttcagatgctaaaaaactatgggttgttagttactcacttatagtatagcaagcattatttcattctttggtttta |
7481594 |
T |
|
| Q |
318 |
tattttaaaatacttagttatttttagctgagatctttttatgacaagttgtaacttcttgtgcaagcttctt |
390 |
Q |
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| T |
7481593 |
tattttaaaatacttagttatttttagctgagatctttttatgacaagttgtaacttcttgtgcaagcttctt |
7481521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 235
Target Start/End: Complemental strand, 7492011 - 7491795
Alignment:
| Q |
20 |
ttcatgatttaattcatgcatttgatgattgtcgagcataaaacctgaattggactaattgtgttcaccatatttgtagtgagataagagttaatcgttt |
119 |
Q |
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| T |
7492011 |
ttcatgagttaattcatgcatttgatgactgtggagctgcaaatgtgaattggaggaattgtgctcaccatgcttgtagtgagataagagctaatcgttt |
7491912 |
T |
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| Q |
120 |
aaccggtgattgtcatttcaaacgggaacttctacgaggaattttgacaatacca-ggcacgaaccagaatgcatcaaaagaagagttttgatatcattg |
218 |
Q |
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|| |||||||||||||||||||||||||||| ||||||||||||||| ||||| | |||| ||||||||||||||||||| ||||||||||| ||| | |
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| T |
7491911 |
aagcggtgattgtcatttcaaacgggaacttttacgaggaattttgaaaatacgagggcatgaaccagaatgcatcaaaaaaagagttttgaaatcgcta |
7491812 |
T |
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| Q |
219 |
tctgcaaatccgttttg |
235 |
Q |
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| T |
7491811 |
tcttcaaatccattttg |
7491795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 106
Target Start/End: Complemental strand, 7490733 - 7490673
Alignment:
| Q |
47 |
attgtcgagcataaaacctgaattggactaattgtgttcaccat-atttgtagtgagataa |
106 |
Q |
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| T |
7490733 |
attgtcgagcataaaacatgagttggactaattgtgttcaccgtgctttgtagtgagataa |
7490673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 19153634 - 19153552
Alignment:
| Q |
20 |
ttcatgatttaattcatgcatttgatgattgtcgagcataaaacctgaattggactaattgtgttcaccatatttgtagtgag |
102 |
Q |
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| T |
19153634 |
ttcatgagctaattcatgcatttgatgactgccgagctgcaaacttggattggactaattgtgctcaccatgcttgtagtgag |
19153552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 19158248 - 19158199
Alignment:
| Q |
186 |
gaatgcatcaaaagaagagttttgatatcattgtctgcaaatccgttttg |
235 |
Q |
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| T |
19158248 |
gaatgcatcaaaaggagagttttaacatcattggctgcaaatccgttttg |
19158199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 19159590 - 19159542
Alignment:
| Q |
124 |
ggtgattgtcatttcaaacgggaacttctacgaggaattttgacaatac |
172 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||| ||||| |
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| T |
19159590 |
ggtgattgtcattacaaacgggaacttctacgaggacatttgaaaatac |
19159542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 19153430 - 19153395
Alignment:
| Q |
124 |
ggtgattgtcatttcaaacgggaacttctacgagga |
159 |
Q |
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| T |
19153430 |
ggtgattgtcattacaaacgggaacttctacgagga |
19153395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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