View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14431_low_8 (Length: 289)

Name: NF14431_low_8
Description: NF14431
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14431_low_8
NF14431_low_8
[»] chr3 (55 HSPs)
chr3 (30-249)||(8470013-8470229)
chr3 (1-271)||(8453059-8453326)
chr3 (37-270)||(6795954-6796184)
chr3 (1-197)||(8570364-8570560)
chr3 (37-269)||(6945728-6945960)
chr3 (30-183)||(6840319-6840475)
chr3 (1-150)||(7586295-7586444)
chr3 (24-148)||(6528475-6528599)
chr3 (1-148)||(6522944-6523091)
chr3 (24-146)||(6592810-6592932)
chr3 (35-148)||(6521864-6521977)
chr3 (31-148)||(6521999-6522116)
chr3 (35-148)||(6522269-6522382)
chr3 (35-148)||(6522809-6522922)
chr3 (31-148)||(6841035-6841152)
chr3 (41-148)||(6840900-6841007)
chr3 (38-205)||(8588273-8588440)
chr3 (24-146)||(6880966-6881088)
chr3 (31-148)||(6522134-6522251)
chr3 (35-148)||(6522539-6522652)
chr3 (31-183)||(6450221-6450373)
chr3 (37-183)||(6481409-6481555)
chr3 (24-146)||(6915551-6915673)
chr3 (40-148)||(6556176-6556284)
chr3 (31-183)||(6730149-6730301)
chr3 (37-255)||(6528239-6528451)
chr3 (24-146)||(6723536-6723658)
chr3 (40-148)||(6556041-6556149)
chr3 (37-255)||(6734413-6734625)
chr3 (31-148)||(6840627-6840747)
chr3 (24-146)||(7748452-7748574)
chr3 (1-148)||(6734098-6734245)
chr3 (1-148)||(6781418-6781565)
chr3 (41-148)||(6840765-6840872)
chr3 (24-187)||(6932042-6932205)
chr3 (31-148)||(6521729-6521846)
chr3 (11-255)||(6555805-6556043)
chr3 (40-148)||(6840492-6840600)
chr3 (24-151)||(5266529-5266656)
chr3 (32-255)||(6521493-6521710)
chr3 (31-146)||(6522406-6522521)
chr3 (31-146)||(6522676-6522791)
chr3 (24-142)||(6236175-6236293)
chr3 (24-146)||(13272010-13272132)
chr3 (24-132)||(6850749-6850857)
chr3 (44-154)||(4390366-4390476)
chr3 (24-146)||(6167347-6167469)
chr3 (24-146)||(6264132-6264254)
chr3 (24-146)||(6898538-6898660)
chr3 (32-141)||(6243775-6243884)
chr3 (37-125)||(6781162-6781250)
chr3 (37-154)||(5248640-5248757)
chr3 (24-120)||(5297195-5297291)
chr3 (74-148)||(6734315-6734389)
chr3 (74-148)||(6781274-6781348)
[»] scaffold1643 (1 HSPs)
scaffold1643 (1-270)||(594-863)
[»] scaffold0425 (3 HSPs)
scaffold0425 (1-148)||(9224-9371)
scaffold0425 (37-255)||(8853-9065)
scaffold0425 (47-148)||(9089-9190)
[»] scaffold0958 (1 HSPs)
scaffold0958 (30-150)||(1249-1369)
[»] chr7 (1 HSPs)
chr7 (42-198)||(6574734-6574890)


Alignment Details
Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 55)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 30 - 249
Target Start/End: Original strand, 8470013 - 8470229
Alignment:
Q  30 taatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttc 129  Q
    ||||||| |||||||| ||||||||||||||||||||||  || ||| |||||| ||||||  || |||||||||||| |||||||||||||||||||||    
T  8470013 taatctctaatttttgtaaagaaggaaggtgttgaggcaatgcgcttctcaattcgggacagctttttatagaaagctctttaagcaaaggaaacccttc 8470112  T
Q  130 aagacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactct 229  Q
    |||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||   ||||||||||||||||||    
T  8470113 aagacacaaccattcctcccaactgttcatcttcacaaatttcaaaacttcaagggacaagaacggaacatttgttgaa---ttgttgccatgaaactct 8470209  T
Q  230 tcaccaatgatctttattcc 249  Q
    |||||||| |||||||||||    
T  8470210 tcaccaattatctttattcc 8470229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 8453059 - 8453326
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttata 100  Q
    |||||||||||||||||||||| ||||||||||   ||||||||| ||||||||||||||||||||||| | | |||||||||||||||| | |||||||    
T  8453059 aattgatgcttccaacatcttgcaatcattaatgaacaatttttgtaaagaaggaaggtgttgaggcagggacattttcaatttgggacattctcttata 8453158  T
Q  101 gaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacat 200  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||  |||| | ||||    
T  8453159 taaagctctttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcttctcaaatttcaaaacttcaagagacctgaacagcacat 8453258  T
Q  201 ttgttaaattgttgttgccatgaaactcttcaccaatgatctttattccgtcacatttggaaatagaaagc 271  Q
    || || || |  |||   | | |||||||||||| |||||||||||||| ||||| |  ||||||||||||    
T  8453259 ttattgaactactgt---cgtaaaactcttcacctatgatctttattccatcacagtctgaaatagaaagc 8453326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 37 - 270
Target Start/End: Complemental strand, 6796184 - 6795954
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacac 136  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||| | ||||| || ||||| |||||| |||||||||||||||||||||||||||     
T  6796184 caatttttgtaaagaaggaaggttttgaggctgagcccttttcaattcgtgacaacttgttatataaagctctttaagcaaaggaaacccttcaagacaa 6796085  T
Q  137 aaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaa 236  Q
    ||||||||||||||||||| ||||  ||||||||||||||| |||||||||  ||||| |||||||||| || | ||||||   | ||| ||||||||||    
T  6796084 aaccattcctcccaattgtccatctcctcaaatttcaaaacctcaagggacctgaacgaaacatttgttgaactattgttg---taaaattcttcaccaa 6795988  T
Q  237 tgatctttattccgtcacatttggaaatagaaag 270  Q
    ||||| |||||||||||||| | ||||| |||||    
T  6795987 tgatcattattccgtcacatcttgaaatggaaag 6795954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 8570560 - 8570364
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttata 100  Q
    |||||| || |||||| ||||| ||||| | ||||||| |||||| ||||||||||||||| ||||||| |||||||||||| || |||||| |||||||    
T  8570560 aattgaagcctccaacttcttgcaatcactgatctccagtttttgtaaagaaggaaggtgtcgaggcagggcccttttcaatctgtgacaatatcttata 8570461  T
Q  101 gaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaa 197  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    |||||| ||||||||||||||||  ||||||||    
T  8570460 gaaagctttttaagcaaaggaaacccttcaatacaaaaccattcctcccaattgttcatccatgcaaattccaaaacttcaagggacctgaacggaa 8570364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 6945728 - 6945960
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaaga 133  Q
    ||||||||| |||||||||||||||||||||||    ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||| ||    
T  6945728 caatttttgtaaagaaggaaggtgttgaggcagcaaggcccttttcaatttgggacaatttcttatagtaagctctttaagcaaaggaaacctttcagga 6945827  T
Q  134 cacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcac 233  Q
    || ||||||||||||||||||  |||   ||| |||||||||||||||||||||  ||||||||||||||||  | | ||||||   | ||||||||| |    
T  6945828 caaaaccattcctcccaattgaccatatgctccaatttcaaaacttcaagggacctgaacggaacatttgttgtactattgttg---taaaactcttcgc 6945924  T
Q  234 caatgatctttattccgtcacatttggaaatagaaa 269  Q
    | |||||||||||||||| ||| || ||||||||||    
T  6945925 cgatgatctttattccgttacagtttgaaatagaaa 6945960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 30 - 183
Target Start/End: Complemental strand, 6840475 - 6840319
Alignment:
Q  30 taatctccaatttttgcaaagaaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaaccc 126  Q
    |||||||||  ||||| ||||||| |||||||| ||||||    ||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  6840475 taatctccagcttttgtaaagaagtaaggtgtttaggcagcactgcctttttcaatttgggacattttcttatagaaatctttttaagcaaaggaaaccc 6840376  T
Q  127 ttcaagacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaag 183  Q
    ||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  6840375 ttcaagacaaaaccatttctcccaattgttcatcttctcaaatttcaaaacttcaag 6840319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 7586295 - 7586444
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttata 100  Q
    |||| ||||||||||| ||||| |||| |||||||||| ||| || ||||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  7586295 aattaatgcttccaacttcttgcaatctttaatctccagtttctgtaaagaaggaaggtgttgaggcagagcccttttcaacttgggacatttttttata 7586394  T
Q  101 gaaagctttttaagcaaaggaaacccttcaagacacaaccattcctccca 150  Q
    ||||||| |||||||||||||||||||||||||    |||||||||||||    
T  7586395 gaaagctctttaagcaaaggaaacccttcaagatgtgaccattcctccca 7586444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 24 - 148
Target Start/End: Complemental strand, 6528599 - 6528475
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| || |||||||||||||||    
T  6528599 aatcaataatctccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaacttgttatagaaatctctttaagcaaaggaaa 6528500  T
Q  124 cccttcaagacacaaccattcctcc 148  Q
    | || |||| || ||||||||||||    
T  6528499 ctctccaaggcataaccattcctcc 6528475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6523091 - 6522944
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttata 100  Q
    ||||||||| |||| | | ||| ||| | |||||| || |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6523091 aattgatgcctccatcttgttgcaattactaatcttcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttata 6522992  T
Q  101 gaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcc 148  Q
    |||| || |||||||||||||||| || |||| || ||| ||||||||    
T  6522991 gaaatctctttaagcaaaggaaactctccaaggcataacaattcctcc 6522944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 6592932 - 6592810
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| | ||||| |||||| || ||||||||| ||    
T  6592932 aatcagtaatctccaatttttgcaaagaaggaaggtgttgaggcagggctcttttcaacttgggacaatgttttatacaaagctcttgaagcaaagggaa 6592833  T
Q  124 cccttcaagacacaaccattcct 146  Q
     ||||||||||| ||||||||||    
T  6592832 accttcaagacataaccattcct 6592810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 6521977 - 6521864
Alignment:
Q  35 tccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagac 134  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| || |||| |    
T  6521977 tccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggc 6521878  T
Q  135 acaaccattcctcc 148  Q
    | ||| ||||||||    
T  6521877 ataacaattcctcc 6521864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 6522116 - 6521999
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| || ||    
T  6522116 aatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctcca 6522017  T
Q  131 agacacaaccattcctcc 148  Q
    || || ||| ||||||||    
T  6522016 aggcataacaattcctcc 6521999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 6522382 - 6522269
Alignment:
Q  35 tccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagac 134  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| || |||| |    
T  6522382 tccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggc 6522283  T
Q  135 acaaccattcctcc 148  Q
    | ||| ||||||||    
T  6522282 ataacaattcctcc 6522269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 6522922 - 6522809
Alignment:
Q  35 tccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagac 134  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| || |||| |    
T  6522922 tccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggc 6522823  T
Q  135 acaaccattcctcc 148  Q
    | ||| ||||||||    
T  6522822 ataacaattcctcc 6522809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 6841152 - 6841035
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    ||||| || |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| || ||    
T  6841152 aatctgcagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctcca 6841053  T
Q  131 agacacaaccattcctcc 148  Q
    || || ||| ||||||||    
T  6841052 aggcataacaattcctcc 6841035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 6841007 - 6840900
Alignment:
Q  41 ttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaacc 140  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| || |||| || |||     
T  6841007 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctccaaggcataaca 6840908  T
Q  141 attcctcc 148  Q
    ||||||||    
T  6840907 attcctcc 6840900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 38 - 205
Target Start/End: Original strand, 8588273 - 8588440
Alignment:
Q  38 aatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacaca 137  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||  ||||| |  |||||| | ||||||||||||||||||||||||| ||| || |    
T  8588273 aatttttgtaaagaaggaaggtgttgaggcaaagcccttttcaattcaggacattcacttataaatagctttttaagcaaaggaaacccttgaaggcata 8588372  T
Q  138 accattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgtt 205  Q
     ||||||||||||||||| ||||   | ||||| |||||||||||| |||  ||| |||||| |||||    
T  8588373 tccattcctcccaattgtccatccgtttaaattccaaaacttcaagagacctgaatggaacaattgtt 8588440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 6880966 - 6881088
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| ||||||||||||||||||||||||| ||||||||||| || || |||||||| |||||||||| | ||||| ||||||||| ||||||||| ||    
T  6880966 aatcaataatctccaatttttgcaaagaagggaggtgttgaggaagggcacttttcaacttgggacaatgttttatacaaagcttttgaagcaaagggaa 6881065  T
Q  124 cccttcaagacacaaccattcct 146  Q
     ||||||||||| ||||||||||    
T  6881066 accttcaagacataaccattcct 6881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 6522251 - 6522134
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    ||||||||  ||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| || ||    
T  6522251 aatctccagattttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaatttcttatagaaatctctttaagcaaaggaaactctcca 6522152  T
Q  131 agacacaaccattcctcc 148  Q
    || || ||| ||||||||    
T  6522151 aggcataacaattcctcc 6522134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 6522652 - 6522539
Alignment:
Q  35 tccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagac 134  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| || |||||||||||||||| || |||| |    
T  6522652 tccagtttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatttgttatagaaatctctttaagcaaaggaaactctccaaggc 6522553  T
Q  135 acaaccattcctcc 148  Q
    | ||| ||||||||    
T  6522552 ataacaattcctcc 6522539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 6450373 - 6450221
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    ||||| ||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||   ||||| |||||| | ||||||| |||||    
T  6450373 aatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactcttca 6450274  T
Q  131 agacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaag 183  Q
    | | | ||||||||||||||||| | || |  |||||||||||| ||||||||    
T  6450273 ataaataaccattcctcccaattctccaactgctcaaatttcaatacttcaag 6450221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 6481555 - 6481409
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacac 136  Q
    |||||| || |||||||||||||||||||| || |||||||||||||||||||||| | |||||| ||||| ||||||| |  ||||||||||| ||||     
T  6481555 caatttctgtaaagaaggaaggtgttgaggaagggcccttttcaatttgggacaatcttttatagtaagctctttaagcgacagaaacccttcatgacat 6481456  T
Q  137 aaccattcctcccaattgttcatcatctcaaatttcaaaacttcaag 183  Q
    |||||||||||| |||| | ||||  || ||||| ||||||||||||    
T  6481455 aaccattcctccaaattttccatccgctgaaattccaaaacttcaag 6481409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 6915551 - 6915673
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |  |||||||| |||||||||| | ||||| |||||| || ||||||||| ||    
T  6915551 aatcaataatctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgaagcaaagggaa 6915650  T
Q  124 cccttcaagacacaaccattcct 146  Q
     | ||||||||| ||||||||||    
T  6915651 acattcaagacataaccattcct 6915673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 6556284 - 6556176
Alignment:
Q  40 tttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaac 139  Q
    |||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |  |||||||||||||||| || |||| || |||    
T  6556284 tttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgagacaatttcttatagaaaacactttaagcaaaggaaactctccaaggcataac 6556185  T
Q  140 cattcctcc 148  Q
     ||||||||    
T  6556184 aattcctcc 6556176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 6730301 - 6730149
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    ||||| ||||||||  ||||||||||||||||||||||| |||||||||| ||||||||||||||||||   ||||| |||||| | ||||||| |||||    
T  6730301 aatcttcaatttttctaaagaaggaaggtgttgaggcagggcccttttcagtttgggacaatttcttatttcaagctctttaagtagaggaaactcttca 6730202  T
Q  131 agacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaag 183  Q
    | | | ||||||||||||||||| | ||    |||||||||||| ||||||||    
T  6730201 ataaataaccattcctcccaattctccaattgctcaaatttcaatacttcaag 6730149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 6528451 - 6528239
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacac 136  Q
    ||||||||| ||||||||||| ||||||||||  |  ||||||||||| |||||||||||||||||||||| ||||||||||||||||| |   |||||     
T  6528451 caatttttgtaaagaaggaagctgttgaggcaaggtgcttttcaatttaggacaatttcttatagaaagctctttaagcaaaggaaacctt---agacat 6528355  T
Q  137 aaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaa 236  Q
    | ||||| |||||| ||   |||  |||||||| || ||| || |||||||  ||| |||||| ||||| |||| ||||   ||| ||| |||||| |||    
T  6528354 atccatttctcccagttcaccatattctcaaatatcgaaaattgaagggacttgaatggaacaattgttgaattattgt---cataaaaatcttcatcaa 6528258  T
Q  237 tgatctttattccgtcaca 255  Q
    ||||||||||||| |||||    
T  6528257 tgatctttattccttcaca 6528239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 6723658 - 6723536
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||| |  |||||||| |||||||||| | ||||| |||||| ||  |||||||| ||    
T  6723658 aatcaataatctccaatttttgcaatgaaggaaggtgttgaggcagggaacttttcaacttgggacaatgttttatacaaagctcttgtagcaaagggaa 6723559  T
Q  124 cccttcaagacacaaccattcct 146  Q
     ||||||||||| ||||||||||    
T  6723558 accttcaagacataaccattcct 6723536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 6556149 - 6556041
Alignment:
Q  40 tttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaac 139  Q
    |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||  ||| || |||||||||||||||| || |||| || ||     
T  6556149 tttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgggacaatttcttattaaaaactctttaagcaaaggaaactctccaaggcataaa 6556050  T
Q  140 cattcctcc 148  Q
    |||||||||    
T  6556049 cattcctcc 6556041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 37 - 255
Target Start/End: Original strand, 6734413 - 6734625
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacac 136  Q
    ||||||||| ||||||||||| ||||||||||| |  | ||||| ||| ||||||||| |||||||||||| | ||||||||||||||| |   | |||     
T  6734413 caatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaacctt---acacat 6734509  T
Q  137 aaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaa 236  Q
    | |||||||||||| |||  |||   ||||||| |||||  ||||||||||  ||| |||||| ||||| ||   || ||||||| |||||||||| |||    
T  6734510 atccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaa---ttattgccataaaactcttcatcaa 6734606  T
Q  237 tgatctttattccgtcaca 255  Q
    ||||||||||||| |||||    
T  6734607 tgatctttattccttcaca 6734625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 6840747 - 6840627
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcaga---gcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaaccct 127  Q
    ||||| || |||||| |||||||||||||||||||| ||    |||||||| |||||||| |||||||||||||||| || |||||||||||||| ||||    
T  6840747 aatcttcagtttttgtaaagaaggaaggtgttgaggtagcaaggccctttttaatttggggcaatttcttatagaaatctctttaagcaaaggaatccct 6840648  T
Q  128 tcaagacacaaccattcctcc 148  Q
    |||||||| ||||||| ||||    
T  6840647 tcaagacaaaaccatttctcc 6840627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 7748452 - 7748574
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |  |||||||| || ||||||| | ||||| |||||| |  ||||||||| ||    
T  7748452 aatcaataatctccaatttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttcggacaatgttttatacaaagctctcgaagcaaagggaa 7748551  T
Q  124 cccttcaagacacaaccattcct 146  Q
     | ||||||||| ||||||||||    
T  7748552 acattcaagacataaccattcct 7748574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 6734098 - 6734245
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttata 100  Q
    |||||||||||||||| | ||| ||||  ||||||||| ||| || ||||||||||||||||| |||||||||||||||||||  | ||| ||   ||||    
T  6734098 aattgatgcttccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatata 6734197  T
Q  101 gaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcc 148  Q
    ||||  | |||||||||||||||| || |||| || ||||||||||||    
T  6734198 gaaatatctttaagcaaaggaaactctccaaggcataaccattcctcc 6734245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6781565 - 6781418
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttata 100  Q
    |||||||||||||||| | ||| ||||  ||||||||| ||| || ||||||||||||||||| |||||||||||||||||||  | ||| ||   ||||    
T  6781565 aattgatgcttccaacttgttgcaatctctaatctccagtttctgtaaagaaggaaggtgttgtggcagagcccttttcaattcagaacatttgaatata 6781466  T
Q  101 gaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcc 148  Q
    ||||  | |||||||||||||||| || |||| || ||||||||||||    
T  6781465 gaaatatctttaagcaaaggaaactctccaaggcataaccattcctcc 6781418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 6840872 - 6840765
Alignment:
Q  41 ttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaacc 140  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||||||    |||||||| || |||||||||||||||| || |||| || |||     
T  6840872 ttttgtaaagaaggaaggtgttgaggcagagcccttttcaattcgggacaatcggatatagaaatctctttaagcaaaggaaactctccaaggcataaca 6840773  T
Q  141 attcctcc 148  Q
    ||||||||    
T  6840772 attcctcc 6840765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 187
Target Start/End: Original strand, 6932042 - 6932205
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||| | | ||   ||||    |||||| | |||||||||||||    
T  6932042 aatcactaatctccagtttttgtaaagaaggaaggtgttgaggaagagcccttttcaattcgagccatcctcttgagtaaagctctctaagcaaaggaaa 6932141  T
Q  124 cccttcaagacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggac 187  Q
    ||| |||||||| |||||||||||| ||   | ||||   |||||| |||||||||||||||||    
T  6932142 cccatcaagacataaccattcctccaaacaatgcatctagtcaaatatcaaaacttcaagggac 6932205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 148
Target Start/End: Complemental strand, 6521846 - 6521729
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||     |||||||| || |||||||||||||||| || ||    
T  6521846 aatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctcca 6521747  T
Q  131 agacacaaccattcctcc 148  Q
    || || ||| ||||||||    
T  6521746 aggcataacaattcctcc 6521729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 6556043 - 6555805
Alignment:
Q  11 tccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttt 110  Q
    |||||||| ||| ||||||| |||  ||| ||||| ||||| ||||| ||||||||||   | ||||||||||| |||||||||  |||| |||||| ||    
T  6556043 tccaacatgttgcaatcattgatccacaaattttgtaaagatggaagatgttgaggcaatactcttttcaatttaggacaattttctatataaagctctt 6555944  T
Q  111 taagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaatt 210  Q
    |||||| |||||||| |   | ||| | |||||||||||| |||  |||   ||||||| |||||  ||||||||||  ||| |||||| ||||| ||      
T  6555943 taagcagaggaaacctt---acacatatccattcctcccagttgaccatatcctcaaatctcaaatattcaagggacttgaatggaacaattgttgaa-- 6555849  T
Q  211 gttgttgccatgaaactcttcaccaatgatctttattccgtcaca 255  Q
     || ||||||| |||||||||| |||||||||||||||| |||||    
T  6555848 -ttattgccataaaactcttcatcaatgatctttattccttcaca 6555805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 40 - 148
Target Start/End: Complemental strand, 6840600 - 6840492
Alignment:
Q  40 tttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaac 139  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||    |||| ||| || |||||||||||||||| || |||| || |||    
T  6840600 tttttgtaaagaaggaaggtgttgtggcagagcccttttcaatttgggacaatcgaatatataaatctctttaagcaaaggaaactctccaaggcataac 6840501  T
Q  140 cattcctcc 148  Q
     ||||||||    
T  6840500 aattcctcc 6840492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 5266529 - 5266656
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||||||||| ||||||||||||||||||||||||||||||| |||    ||||||||||| ||||| ||  |||| |||||| || ||||||||| ||    
T  5266529 aatcattaatcaccaatttttgcaaagaaggaaggtgttgaggtagatattttttcaatttgtgacaactttctataaaaagctcttcaagcaaagggaa 5266628  T
Q  124 cccttcaagacacaaccattcctcccaa 151  Q
     | ||||| ||| |||||||||| ||||    
T  5266629 actttcaacacataaccattccttccaa 5266656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 32 - 255
Target Start/End: Complemental strand, 6521710 - 6521493
Alignment:
Q  32 atctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaa 131  Q
    |||| ||||||||| ||||||| ||||||||||||||| |  ||||||||||| ||||||||| ||||| |||||| |||||||| |||||||| |   |    
T  6521710 atcttcaatttttgtaaagaagaaaggtgttgaggcagggtgcttttcaatttaggacaattttttatataaagctctttaagcagaggaaacctt---a 6521614  T
Q  132 gacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttc 231  Q
     ||| | |||||||||||| |||  |||   || |||| |||||  || |||||||  ||| |||||| ||||| ||   || ||||||| ||| |||||    
T  6521613 cacatatccattcctcccagttgaccatatcctgaaatctcaaatattgaagggacttgaatggaacaattgttgaa---ttattgccataaaaatcttc 6521517  T
Q  232 accaatgatctttattccgtcaca 255  Q
    | |||||||||||||||| |||||    
T  6521516 atcaatgatctttattccttcaca 6521493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 6522521 - 6522406
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||     |||||||| || |||||||||||||||| || ||    
T  6522521 aatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctcca 6522422  T
Q  131 agacacaaccattcct 146  Q
    || || ||| ||||||    
T  6522421 aggcataacaattcct 6522406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 146
Target Start/End: Complemental strand, 6522791 - 6522676
Alignment:
Q  31 aatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttca 130  Q
    |||||||| |||||| |||||||||||||||||| |||||||||||||||||| |||||||     |||||||| || |||||||||||||||| || ||    
T  6522791 aatctccagtttttgtaaagaaggaaggtgttgatgcagagcccttttcaattcgggacaaaaggatatagaaatctctttaagcaaaggaaactctcca 6522692  T
Q  131 agacacaaccattcct 146  Q
    || || ||| ||||||    
T  6522691 aggcataacaattcct 6522676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 142
Target Start/End: Original strand, 6236175 - 6236293
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||||||||||||||||||| ||||||||| |||||||||  | |||||||| |||||||||| | ||||| |||||| |||||| ||||| ||    
T  6236175 aatcaataatctccaatttttgcaaacaaggaaggtattgaggcaggtcacttttcaacttgggacaatgttttatacaaagctctttaagaaaagggaa 6236274  T
Q  124 cccttcaagacacaaccat 142  Q
     ||| || |||| ||||||    
T  6236275 acctccacgacataaccat 6236293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 146
Target Start/End: Complemental strand, 13272132 - 13272010
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||||||||| ||||||||| |||||| ||| ||||||||||| || ||||| ||||||||||   ||||| |||||| || |||||| || ||    
T  13272132 aatcaataatctccaacttttgcaaacaaggaacgtgctgaggcagagcactcttcaacttgggacaatgcgttatacaaagctcttgaagcaatgggaa 13272033  T
Q  124 cccttcaagacacaaccattcct 146  Q
     ||||||||||| ||||||||||    
T  13272032 accttcaagacataaccattcct 13272010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 132
Target Start/End: Complemental strand, 6850857 - 6850749
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| ||||||||||||||||| ||||||| |||||||||||||| || |||||||| || ||||||| | ||||| |||||| || ||| ||||| ||    
T  6850857 aatcaataatctccaatttttgctaagaagggaggtgttgaggcagggcacttttcaacttcggacaatgttttatacaaagctcttgaagtaaagggaa 6850758  T
Q  124 cccttcaag 132  Q
     ||||||||    
T  6850757 accttcaag 6850749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 44 - 154
Target Start/End: Complemental strand, 4390476 - 4390366
Alignment:
Q  44 tgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaaccatt 143  Q
    |||||||||||||||||||| || |||    || ||||||| |||||||| | ||||||||||| |||||||||||| || ||||||| ||| |||||||    
T  4390476 tgcaaagaaggaaggtgttggggtagaaattttgtcaattttggacaattacgtatagaaagctctttaagcaaagggaaaccttcaacacataaccatt 4390377  T
Q  144 cctcccaattg 154  Q
    ||| |||||||    
T  4390376 ccttccaattg 4390366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 6167347 - 6167469
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||| ||||| ||||||||| ||||||| || ||||||||||| |||||||| |||||||| | | ||| | |||||| || ||||||||| ||    
T  6167347 aatcaataatttccaacttttgcaaacaaggaagatgatgaggcagagcacttttcaacttgggacattgttttagacaaagctcttgaagcaaagggaa 6167446  T
Q  124 cccttcaagacacaaccattcct 146  Q
     |||||||| || ||||||||||    
T  6167447 accttcaaggcataaccattcct 6167469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 6264132 - 6264254
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||||||||||||| |||||||||| ||||| | |||||| |  |||||||||||||||||||   ||| |||||||| |||||  ||||| ||    
T  6264132 aatcaataatctccaattttagcaaagaagggaggtgataaggcagggtacttttcaatttgggacaatgatttagagaaagctctttaactaaagggaa 6264231  T
Q  124 cccttcaagacacaaccattcct 146  Q
     || |||||||| ||||||||||    
T  6264232 accatcaagacataaccattcct 6264254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 24 - 146
Target Start/End: Original strand, 6898538 - 6898660
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaa 123  Q
    ||||| |||| | ||| ||||||||||||||||||||||||||||| |  |||||||| || ||||||| | | ||| |||||| || ||||||| ||||    
T  6898538 aatcaataattttcaacttttgcaaagaaggaaggtgttgaggcagggaacttttcaacttcggacaatgtttgatacaaagctcttgaagcaaatgaaa 6898637  T
Q  124 cccttcaagacacaaccattcct 146  Q
     | ||||||||| ||||||||||    
T  6898638 acattcaagacataaccattcct 6898660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 141
Target Start/End: Original strand, 6243775 - 6243884
Alignment:
Q  32 atctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaa 131  Q
    |||||||||||||||||  ||||||| |||||||||||   ||||||||| |||||||| | |||||| ||||||| ||| |||||||| || |||||||    
T  6243775 atctccaatttttgcaagcaaggaagatgttgaggcagtttccttttcaacttgggacagtatcttattgaaagctctttcagcaaagggaaaccttcaa 6243874  T
Q  132 gacacaacca 141  Q
     ||| |||||    
T  6243875 tacataacca 6243884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 6781250 - 6781162
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacc 125  Q
    ||||||||| ||||||||||| ||||||||||| |  | ||||| ||| ||||||||| |||||||||||| | |||||||||||||||    
T  6781250 caatttttgtaaagaaggaagatgttgaggcagggtgcctttcagtttaggacaatttgttatagaaagctctataagcaaaggaaacc 6781162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 5248640 - 5248757
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacac 136  Q
    ||||| ||||| ||||||||||| ||  || ||| |  ||| ||||||||||||||||||||||||||||| |||||||||||| || |  |||| |||     
T  5248640 caattgttgcagagaaggaaggtttttgggtagacctttttgcaatttgggacaatttcttatagaaagctgtttaagcaaagggaaacactcaacacat 5248739  T
Q  137 aaccattcctcccaattg 154  Q
    ||||||| || |||||||    
T  5248740 aaccatttcttccaattg 5248757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 5297195 - 5297291
Alignment:
Q  24 aatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaagg 120  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||||   ||||||||| || || || | |||||| || |||| ||| ||||||||    
T  5297195 aatcactaatcttcaatttttgcaaagaaggaagatgttgaggcagtttccttttcaacttagggcagtatcttattgacagctctttcagcaaagg 5297291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 6734315 - 6734389
Alignment:
Q  74 cttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcc 148  Q
    ||||| ||||||| |||||  |||||| |||||| ||||||  || |||||||||||||||| ||||||||||||    
T  6734315 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctcc 6734389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 6781348 - 6781274
Alignment:
Q  74 cttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcc 148  Q
    ||||| ||||||| |||||  |||||| |||||| ||||||  || |||||||||||||||| ||||||||||||    
T  6781348 cttttgaatttggaacaatgacttatataaagctctttaagagaaagaaacccttcaagacataaccattcctcc 6781274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 594 - 863
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagag---cccttttcaatttgggacaatttctt 97  Q
    ||||||||| |||| | | ||| ||||| |||| | || |||||| ||| |||||||||||||||||||||   ||||||  ||||||||||| ||||||    
T  594 aattgatgcctccatcttgttgcaatcagtaatattcagtttttgtaaaaaaggaaggtgttgaggcagagtggccctttctaatttgggacactttctt 693  T
Q  98 atagaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaa 197  Q
    |||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  694 atagtaagctctttaagcaaaggaaacccttcaggacacaaccattcctcccaattgttcaacttctcaaatttcaaaacttcaagggacaagaacggaa 793  T
Q  198 catttgttaaattgttgttgccatgaaactcttcaccaatgatctttattccgtcacatttggaaatagaaag 270  Q
    |||  ||||||   ||| ||||||||| |||||||||||||||||||||||| ||||| |  |||||||||||    
T  794 catgcgttaaa---ttgctgccatgaatctcttcaccaatgatctttattccatcacaatatgaaatagaaag 863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 72; Significance: 9e-33; HSPs: 3)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 9371 - 9224
Alignment:
Q  1 aattgatgcttccaacatcttgtaatcattaatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttata 100  Q
    |||||||||||||||| | ||| ||||||||||   ||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||   ||||    
T  9371 aattgatgcttccaacttgttgcaatcattaatgaacaatttttgtaaagaaggaaggtgttgtggcagagcccttttcaattcgggacaattggatata 9272  T
Q  101 gaaagctttttaagcaaaggaaacccttcaagacacaaccattcctcc 148  Q
    |||| ||  ||||||||||||||| || |||| || ||||||||||||    
T  9271 gaaaactcgttaagcaaaggaaactctccaaggcataaccattcctcc 9224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 37 - 255
Target Start/End: Complemental strand, 9065 - 8853
Alignment:
Q  37 caatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacac 136  Q
    ||||||||| ||||||||||| ||||||||||| |  ||||||||||| |||||||||  |||| |||||| |||||||| |||||||| |   | |||     
T  9065 caatttttgtaaagaaggaagatgttgaggcagggtgcttttcaatttaggacaattttctatataaagctctttaagcagaggaaacctt---acacat 8969  T
Q  137 aaccattcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaacatttgttaaattgttgttgccatgaaactcttcaccaa 236  Q
    | |||||||||||| |||  |||   | ||||| |||||  ||||||||||  ||| |||||| ||||| ||   || ||||||| ||| |||||| |||    
T  8968 atccattcctcccagttgaccatatccacaaatctcaaatattcaagggacttgaatggaacaattgttgaa---ttattgccataaaattcttcatcaa 8872  T
Q  237 tgatctttattccgtcaca 255  Q
    ||||||||||||| |||||    
T  8871 tgatctttattccttcaca 8853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 9190 - 9089
Alignment:
Q  47 aaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaaccattcct 146  Q
    ||||||||||| ||||||||||   ||||||| ||||| | |||||  | ||||||||||| ||||||  || |||||||||||||||| ||||||||||    
T  9190 aaagaaggaagatgttgaggcaatacccttttgaatttagaacaataccatatagaaagctctttaagagaaagaaacccttcaagacataaccattcct 9091  T
Q  147 cc 148  Q
    ||    
T  9090 cc 9089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 150
Target Start/End: Complemental strand, 1369 - 1249
Alignment:
Q  30 taatctccaatttttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttc 129  Q
    |||| |||||| |||| ||||||||||||||| |||| || |||||||||||| || |||||| |||||||||||| |||||||||||||||||||||||    
T  1369 taatatccaatatttgtaaagaaggaaggtgtcgaggtagggcccttttcaatatgcgacaatatcttatagaaagatttttaagcaaaggaaacccttc 1270  T
Q  130 aagacacaaccattcctccca 150  Q
    ||||||  ||||||| |||||    
T  1269 aagacaataccattcttccca 1249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 42 - 198
Target Start/End: Complemental strand, 6574890 - 6574734
Alignment:
Q  42 tttgcaaagaaggaaggtgttgaggcagagcccttttcaatttgggacaatttcttatagaaagctttttaagcaaaggaaacccttcaagacacaacca 141  Q
    ||||||||||| |||||| |||||||||   ||||||||||||||||||||    |||| |||||| ||| ||||| ||||||| ||||||  | |||||    
T  6574890 tttgcaaagaaagaaggttttgaggcaggaaccttttcaatttgggacaatggtctatataaagctctttgagcaagggaaaccgttcaagttaaaacca 6574791  T
Q  142 ttcctcccaattgttcatcatctcaaatttcaaaacttcaagggacaagaacggaac 198  Q
    ||||| ||| | |  |||  || |||||| ||||| ||||||||||  |||||||||    
T  6574790 ttccttccattcgggcatattcccaaattccaaaaattcaagggacctgaacggaac 6574734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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