View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14432_high_3 (Length: 519)
Name: NF14432_high_3
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14432_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 39298349 - 39298838
Alignment:
| Q |
1 |
cattgtttcaccaactttctctccaacatttcccacagtttcaccaatgcttgacatcacattgcttcccctccccttctcttgataattagtaccttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39298349 |
cattgtttcaccaactttctctccaacatttcccacagtttcaccaatgcttgacatcacattgcttcccctccccttctcttgataattagtaccttgt |
39298448 |
T |
|
| Q |
101 |
gcttgagttctttccccagttggcatcattttttgagaatagttgctcacattttcgccgatacctccggatgatggcatgatctcttcaccttcctaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
39298449 |
gcttgagttctttccccagttggcatcattttttgagaatagttgctcacattttcgccgatacctcctgatgatggcatgatctcttcaccttcctaaa |
39298548 |
T |
|
| Q |
201 |
atcaaaccaaaattttcagtgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaactaaacatttgattatgaaaagtaaa |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39298549 |
atca--------------gtgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaattaaacatttgattatgaaaagtaaa |
39298634 |
T |
|
| Q |
301 |
catgatgataaaaaagaaatagtctaataaaagtgatgaatgtatagaacagaacctgaagttgaccagaagcccttttagtctcatagtcacgccatga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39298635 |
catgatgataaaaaagaaatagtctaataaaagtgatgaatgtatagaacagaacctgaagttgaccagaagcccttttagtctcatattcacgccatga |
39298734 |
T |
|
| Q |
401 |
ttcatctttcttcttagcagtaaactccttagcagtctcgccagcagaagcagccaaacctttcacaacatccaccgatttcgacgcaagctcggccgcc |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
39298735 |
ttcatctttcttcttagcagtaaactccttagcagtctcaccagcagaagcagccaaacctttcacaacatccaccgatttcaacgcaagcccggccgcc |
39298834 |
T |
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