View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14432_high_9 (Length: 259)
Name: NF14432_high_9
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14432_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 116; Significance: 4e-59; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 112 - 239
Target Start/End: Original strand, 26935500 - 26935627
Alignment:
| Q |
112 |
ttggaaggttttaggaaacatgttctatttaaaactaagtgtatacataagaatgtttctttttgtcaaatcctaaacaatgctatacatttactcttct |
211 |
Q |
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| T |
26935500 |
ttggaaggttttaggaaacatgttctatttaaaactaagtgtatacataagaatgtttctttttgtcaaatcctaaacaatgctatacatttactcttct |
26935599 |
T |
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| Q |
212 |
caattgtgtagactcctctggattacgt |
239 |
Q |
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| T |
26935600 |
caaatgtgtagactcctcttgatcacgt |
26935627 |
T |
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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 26935402 - 26935433
Alignment:
| Q |
15 |
aatactcaatttatatcaaatgaagtcacctt |
46 |
Q |
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| T |
26935402 |
aatactcaatttatatcaaatgaagtcacctt |
26935433 |
T |
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