View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14432_low_1 (Length: 617)

Name: NF14432_low_1
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14432_low_1
NF14432_low_1
[»] chr6 (16 HSPs)
chr6 (251-359)||(28983233-28983341)
chr6 (251-359)||(34717696-34717804)
chr6 (251-351)||(19062764-19062864)
chr6 (251-359)||(34717241-34717349)
chr6 (251-354)||(28982786-28982888)
chr6 (259-352)||(28535412-28535506)
chr6 (251-352)||(7635576-7635677)
chr6 (251-352)||(7635130-7635231)
chr6 (251-352)||(18290436-18290537)
chr6 (251-352)||(18290221-18290322)
chr6 (290-359)||(2924952-2925021)
chr6 (251-316)||(4348889-4348954)
chr6 (259-331)||(12999426-12999498)
chr6 (295-332)||(10608304-10608341)
chr6 (313-354)||(14496448-14496489)
chr6 (324-354)||(14496484-14496514)
[»] chr3 (30 HSPs)
chr3 (251-354)||(930374-930477)
chr3 (251-359)||(11442096-11442204)
chr3 (251-354)||(21166097-21166200)
chr3 (251-354)||(32473765-32473868)
chr3 (251-354)||(42257218-42257321)
chr3 (251-361)||(929908-930018)
chr3 (251-359)||(32474403-32474511)
chr3 (251-352)||(38000233-38000334)
chr3 (251-359)||(43521076-43521181)
chr3 (251-345)||(11441662-11441756)
chr3 (262-354)||(50766634-50766725)
chr3 (259-359)||(14788549-14788649)
chr3 (251-352)||(5113204-5113305)
chr3 (251-352)||(20586525-20586626)
chr3 (251-352)||(24394675-24394776)
chr3 (251-352)||(26006719-26006820)
chr3 (252-359)||(14788273-14788380)
chr3 (251-331)||(36992114-36992194)
chr3 (251-331)||(37017554-37017634)
chr3 (251-331)||(45000768-45000848)
chr3 (251-352)||(20586078-20586179)
chr3 (251-352)||(5113649-5113750)
chr3 (251-352)||(24394253-24394354)
chr3 (251-352)||(45000321-45000422)
chr3 (251-352)||(26006152-26006253)
chr3 (251-336)||(42258003-42258087)
chr3 (259-352)||(43104726-43104819)
chr3 (309-359)||(50836215-50836265)
chr3 (309-359)||(50839588-50839638)
chr3 (317-354)||(24181950-24181987)
[»] chr7 (18 HSPs)
chr7 (251-360)||(20559744-20559853)
chr7 (251-359)||(20560222-20560330)
chr7 (251-354)||(33139778-33139881)
chr7 (251-354)||(33140235-33140338)
chr7 (251-359)||(4180279-4180387)
chr7 (251-359)||(42901077-42901185)
chr7 (251-354)||(4179641-4179744)
chr7 (251-354)||(40641111-40641214)
chr7 (263-354)||(42900651-42900742)
chr7 (251-331)||(30414208-30414288)
chr7 (251-354)||(40640657-40640757)
chr7 (251-352)||(25137418-25137519)
chr7 (251-352)||(25137865-25137967)
chr7 (264-320)||(35211940-35211996)
chr7 (297-352)||(33686932-33686987)
chr7 (295-332)||(29006374-29006411)
chr7 (295-332)||(29007183-29007220)
chr7 (296-332)||(41224828-41224864)
[»] chr1 (22 HSPs)
chr1 (251-359)||(2820957-2821065)
chr1 (251-354)||(12800411-12800514)
chr1 (251-354)||(28371644-28371747)
chr1 (251-359)||(48594166-48594274)
chr1 (251-359)||(48598777-48598885)
chr1 (251-354)||(2821430-2821533)
chr1 (251-354)||(48153100-48153203)
chr1 (251-351)||(33631031-33631131)
chr1 (259-359)||(50164236-50164336)
chr1 (251-354)||(12799993-12800096)
chr1 (251-363)||(28371194-28371306)
chr1 (251-354)||(50164650-50164753)
chr1 (251-352)||(43756288-43756389)
chr1 (251-352)||(38328827-38328928)
chr1 (259-352)||(43755855-43755948)
chr1 (251-352)||(38468912-38469013)
chr1 (251-352)||(38469226-38469327)
chr1 (295-359)||(17151864-17151928)
chr1 (292-359)||(33630476-33630543)
chr1 (251-321)||(38328424-38328494)
chr1 (264-354)||(48589092-48589184)
chr1 (298-361)||(17150999-17151062)
[»] chr8 (11 HSPs)
chr8 (251-359)||(14197658-14197766)
chr8 (251-354)||(37657851-37657954)
chr8 (251-354)||(39439762-39439865)
chr8 (251-354)||(39440540-39440642)
chr8 (251-354)||(41714607-41714710)
chr8 (251-352)||(30846022-30846123)
chr8 (251-352)||(30846437-30846538)
chr8 (299-354)||(31408164-31408219)
chr8 (251-315)||(41715208-41715272)
chr8 (262-315)||(37658496-37658549)
chr8 (292-332)||(42573606-42573646)
[»] chr5 (16 HSPs)
chr5 (251-354)||(5620810-5620913)
chr5 (12-161)||(34598892-34599039)
chr5 (251-352)||(42655681-42655782)
chr5 (251-362)||(3595773-3595884)
chr5 (251-339)||(16996970-16997058)
chr5 (251-352)||(8321328-8321429)
chr5 (251-352)||(12330603-12330704)
chr5 (259-352)||(7858333-7858426)
chr5 (251-352)||(12330154-12330255)
chr5 (251-331)||(24027627-24027707)
chr5 (251-322)||(7858760-7858831)
chr5 (251-352)||(3596234-3596335)
chr5 (251-352)||(8320881-8320982)
chr5 (251-352)||(24027193-24027294)
chr5 (251-352)||(29759603-29759704)
chr5 (294-352)||(31078462-31078520)
[»] chr2 (16 HSPs)
chr2 (251-354)||(3705341-3705444)
chr2 (251-354)||(16681570-16681673)
chr2 (251-359)||(3705765-3705875)
chr2 (251-352)||(30899396-30899497)
chr2 (251-363)||(15561981-15562093)
chr2 (251-352)||(6609984-6610085)
chr2 (259-352)||(7994522-7994615)
chr2 (251-352)||(16903838-16903939)
chr2 (251-352)||(16992332-16992434)
chr2 (251-331)||(7994082-7994162)
chr2 (251-352)||(15561547-15561648)
chr2 (259-352)||(37996532-37996625)
chr2 (251-352)||(6609557-6609658)
chr2 (251-331)||(16903425-16903504)
chr2 (259-352)||(30899850-30899943)
chr2 (259-341)||(16682215-16682298)
[»] chr4 (18 HSPs)
chr4 (251-359)||(19860813-19860921)
chr4 (251-354)||(19860334-19860437)
chr4 (251-352)||(20174976-20175077)
chr4 (251-354)||(52532127-52532230)
chr4 (251-352)||(5235380-5235481)
chr4 (251-352)||(6934443-6934544)
chr4 (259-360)||(52532379-52532480)
chr4 (251-352)||(6933827-6933928)
chr4 (251-359)||(5259269-5259377)
chr4 (251-331)||(5235827-5235907)
chr4 (251-359)||(30213856-30213964)
chr4 (292-332)||(46764279-46764319)
chr4 (295-344)||(25655623-25655673)
chr4 (295-332)||(11680303-11680340)
chr4 (295-332)||(11688582-11688619)
chr4 (292-332)||(31910581-31910621)
chr4 (251-306)||(20175366-20175421)
chr4 (295-337)||(12590187-12590229)
[»] scaffold0095 (1 HSPs)
scaffold0095 (251-354)||(42873-42975)
[»] scaffold0508 (2 HSPs)
scaffold0508 (251-352)||(4139-4240)
scaffold0508 (251-352)||(4565-4666)
[»] scaffold0022 (2 HSPs)
scaffold0022 (251-352)||(61580-61681)
scaffold0022 (251-312)||(62028-62089)
[»] scaffold0006 (1 HSPs)
scaffold0006 (251-331)||(202224-202304)
[»] scaffold0136 (1 HSPs)
scaffold0136 (287-352)||(22203-22269)
[»] scaffold0189 (1 HSPs)
scaffold0189 (79-161)||(25993-26075)
[»] scaffold0155 (1 HSPs)
scaffold0155 (296-332)||(17366-17402)


Alignment Details
Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 28983233 - 28983341
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28983233 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 28983332  T
Q  351 accttacct 359  Q
    |||| ||||    
T  28983333 acctcacct 28983341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 34717696 - 34717804
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34717696 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 34717795  T
Q  351 accttacct 359  Q
    |||| ||||    
T  34717796 acctcacct 34717804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 19062764 - 19062864
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  19062764 ctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttctcatggtgggaaaaaagtagctttcccatgctaa 19062863  T
Q  351 a 351  Q
    |    
T  19062864 a 19062864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 34717349 - 34717241
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||| |||||||||||||| ||||||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  34717349 ctagtgatgagagagtatgataaggacgtgttcttgatttgatctaatgatcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 34717250  T
Q  351 accttacct 359  Q
    |||| ||||    
T  34717249 acctcacct 34717241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 28982888 - 28982786
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||  ||||||||||| |||||||||||||    
T  28982888 ctagtgatgagggagtatgataaggatgtgttcttggtttgatcgaatggtcaaaaactaactttcccat-gatagaaaaaagtagttttcccatgctaa 28982790  T
Q  351 acct 354  Q
    ||||    
T  28982789 acct 28982786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 28535412 - 28535506
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagg-gaaaaaagtagctttcccatgctaaac 352  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||  ||||||||||||||||||||||||||    
T  28535412 gaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcctatggtggaaaaaaaagtagctttcccatgctaaac 28535506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 7635576 - 7635677
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  7635576 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagtctttcccatgcta 7635674  T
Q  350 aac 352  Q
    |||    
T  7635675 aac 7635677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 7635231 - 7635130
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  7635231 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 7635133  T
Q  350 aac 352  Q
    |||    
T  7635132 aac 7635130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 18290436 - 18290537
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  18290436 ctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 18290534  T
Q  350 aac 352  Q
    |||    
T  18290535 aac 18290537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 18290322 - 18290221
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagc-tttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| |||| ||||||||||||    
T  18290322 ctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaattaactttcccatggtggg-aaaaattagcttttcccatgcta 18290224  T
Q  350 aac 352  Q
    |||    
T  18290223 aac 18290221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 2924952 - 2925021
Alignment:
Q  290 tgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaaccttacct 359  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||    
T  2924952 tgatctaatggtcaaaaactaactttcctatggtgggaaaaaagtagctttcccatgctaaacctcacct 2925021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 251 - 316
Target Start/End: Complemental strand, 4348954 - 4348889
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttc 316  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||| |||||||    
T  4348954 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaacaaactttc 4348889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 259 - 331
Target Start/End: Original strand, 12999426 - 12999498
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||| |||||||||||| | ||||| ||||||||    
T  12999426 gagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaacttgctcatggtgggaaaaa 12999498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 10608304 - 10608341
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    |||||||||||||||||||||||||||| |||||||||    
T  10608304 taatggtcaaaaactaactttcccatggtgggaaaaaa 10608341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 354
Target Start/End: Complemental strand, 14496489 - 14496448
Alignment:
Q  313 tttcccatggagggaaaaaagtagctttcccatgctaaacct 354  Q
    |||||||||| | |||||||||||||||||||||||||||||    
T  14496489 tttcccatggtgagaaaaaagtagctttcccatgctaaacct 14496448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 354
Target Start/End: Original strand, 14496484 - 14496514
Alignment:
Q  324 gggaaaaaagtagctttcccatgctaaacct 354  Q
    |||||||||||||||||||||||||||||||    
T  14496484 gggaaaaaagtagctttcccatgctaaacct 14496514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 930374 - 930477
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  930374 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 930473  T
Q  351 acct 354  Q
    ||||    
T  930474 acct 930477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 11442096 - 11442204
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11442096 ctagtgatgagggagtatgataaggatgtgttctttgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 11442195  T
Q  351 accttacct 359  Q
    |||| ||||    
T  11442196 acctcacct 11442204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 21166097 - 21166200
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  21166097 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccatgctaa 21166196  T
Q  351 acct 354  Q
    ||||    
T  21166197 acct 21166200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 32473868 - 32473765
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  32473868 ctagtgatgagggagtataataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatagtgggaaaaaagtagctttcccatgctaa 32473769  T
Q  351 acct 354  Q
    ||||    
T  32473768 acct 32473765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 42257321 - 42257218
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||||    
T  42257321 ctagtgatgagggagtatgataaagatgtgttcttggtttgatttaatggtcaaaaactaacttttccatggtgggaaaaaagtagttttcccatgctaa 42257222  T
Q  351 acct 354  Q
    ||||    
T  42257221 acct 42257218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 251 - 361
Target Start/End: Complemental strand, 930018 - 929908
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| | |||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  930018 ctagtgatgggggagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagatttcccatgctaa 929919  T
Q  351 accttaccttc 361  Q
    |||| ||||||    
T  929918 acctcaccttc 929908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 32474403 - 32474511
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32474403 ctagtgatgagggagtatggtaaggatgcgttcttcgtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 32474502  T
Q  351 accttacct 359  Q
    |||| ||||    
T  32474503 acctcacct 32474511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 38000233 - 38000334
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  38000233 ctagtgatgaggaagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaacttttccatggtgggaaaaaagcagctttcccatgctaa 38000332  T
Q  351 ac 352  Q
    ||    
T  38000333 ac 38000334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 43521181 - 43521076
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||||||||||    |||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  43521181 ctagtgatgagggagtatgataaggatgtgta---ggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 43521085  T
Q  351 accttacct 359  Q
    |||| ||||    
T  43521084 acctcacct 43521076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 251 - 345
Target Start/End: Complemental strand, 11441756 - 11441662
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccat 345  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  ||||||||| |||||||||    
T  11441756 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtaactttcccat 11441662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 262 - 354
Target Start/End: Complemental strand, 50766725 - 50766634
Alignment:
Q  262 ggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaacct 354  Q
    ||||||||||||| |||||||||||||||||| ||||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||||    
T  50766725 ggagtatgataagaatgtgttcttggtttgatctaatggtcaaaaattaacttt-ccatggtgggaaaaaagtagctttcccatgctaaacct 50766634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 259 - 359
Target Start/End: Original strand, 14788549 - 14788649
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaaccttacc 358  Q
    |||| ||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||   |||||||||||||||||||||| ||||||| |||    
T  14788549 gaggaagtatgataagaatgtcttcttggtttgatctaatggtcaaaaactaactttcccatgataggaaaaaagtagctttcccatgttaaacctcacc 14788648  T
Q  359 t 359  Q
    |    
T  14788649 t 14788649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 5113305 - 5113204
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  5113305 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 5113207  T
Q  350 aac 352  Q
    |||    
T  5113206 aac 5113204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 20586525 - 20586626
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  20586525 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 20586623  T
Q  350 aac 352  Q
    |||    
T  20586624 aac 20586626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 24394675 - 24394776
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagc-tttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| |||| ||||||||||||    
T  24394675 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcatttcccatgcta 24394773  T
Q  350 aac 352  Q
    |||    
T  24394774 aac 24394776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 26006719 - 26006820
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| || || ||||| ||| |||||||||||||    
T  26006719 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttctcat-gatgggaaaaattagcctttcccatgcta 26006817  T
Q  350 aac 352  Q
    |||    
T  26006818 aac 26006820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 14788380 - 14788273
Alignment:
Q  252 tagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggaggg-aaaaaagtagctttcccatgctaa 350  Q
    |||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||  ||||| ||| |||||||||| |||||||||||||    
T  14788380 tagtgatgagggagtatgataaagatgtgttcttggtttgttctaatggtcaaaaactaacttt-tcatggtgggaaaaaaagtagatttcccatgctaa 14788282  T
Q  351 accttacct 359  Q
    |||| ||||    
T  14788281 acctcacct 14788273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 36992114 - 36992194
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  36992114 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 36992194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 37017554 - 37017634
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  37017554 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 37017634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 45000768 - 45000848
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  45000768 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 45000848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 20586179 - 20586078
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  20586179 ctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 20586081  T
Q  350 aac 352  Q
    |||    
T  20586080 aac 20586078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 5113649 - 5113750
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||| |||||| |    |||||||||||||||    
T  5113649 ctagtgatgagggagtatggtaaggatgtattcttggtttgatctaatggttaaaaactaactttcccatggtgggaaagattaggctttcccatgctaa 5113748  T
Q  351 ac 352  Q
    ||    
T  5113749 ac 5113750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 24394354 - 24394253
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||  |||||||| ||| ||||||||| |||    
T  24394354 ctagtgatgagggagtatgctaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatgg-tggaaaaaattagtctttcccatacta 24394256  T
Q  350 aac 352  Q
    |||    
T  24394255 aac 24394253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 45000422 - 45000321
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||||||| |||||| ||||||| |||||||||||||||||| | ||| ||||| ||| |||||||||||||    
T  45000422 ctagtgatgagggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatagtggg-aaaaattagcctttcccatgcta 45000324  T
Q  350 aac 352  Q
    |||    
T  45000323 aac 45000321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 26006253 - 26006152
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| || |||||||| |||||||||||| || ||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  26006253 ctagtgatgaaggagtatggtaaggatgtgttattagtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 26006155  T
Q  350 aac 352  Q
    |||    
T  26006154 aac 26006152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 251 - 336
Target Start/End: Original strand, 42258003 - 42258087
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag 336  Q
    ||||||| |||||||||||||||| ||||||| ||| |||||| ||||||||||||||||||||||| |||  |||||||||||||    
T  42258003 ctagtgatgagggagtatgataag-atgtgttattgatttgatctaatggtcaaaaactaactttccaatgatgggaaaaaagtag 42258087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 43104726 - 43104819
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagc-tttcccatgctaaac 352  Q
    ||||||||||| ||| ||||||||||| ||||||| ||||||| ||||||||||||||||||  | || ||||| |||| |||||||||||||||    
T  43104726 gagggagtatggtaaagatgtgttcttcgtttgatctaatggttaaaaactaactttcccat-tatgggaaaaattagcatttcccatgctaaac 43104819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 309 - 359
Target Start/End: Complemental strand, 50836265 - 50836215
Alignment:
Q  309 taactttcccatggagggaaaaaagtagctttcccatgctaaaccttacct 359  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  50836265 taactttcccatggtgggaaaaaaatagctttcccatgctaaacctcacct 50836215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 309 - 359
Target Start/End: Original strand, 50839588 - 50839638
Alignment:
Q  309 taactttcccatggagggaaaaaagtagctttcccatgctaaaccttacct 359  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||| ||||    
T  50839588 taactttcccatggtgggaaaaaaatagctttcccatgctaaacctcacct 50839638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 24181950 - 24181987
Alignment:
Q  317 ccatggagggaaaaaagtagctttcccatgctaaacct 354  Q
    |||||| |||||||||||||||||||||||||||||||    
T  24181950 ccatggtgggaaaaaagtagctttcccatgctaaacct 24181987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 3e-43; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 251 - 360
Target Start/End: Complemental strand, 20559853 - 20559744
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| |||||||||||||||||    
T  20559853 ctagtgatgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggtggaaaaaaaatagctttcccatgctaa 20559754  T
Q  351 accttacctt 360  Q
    |||| |||||    
T  20559753 acctcacctt 20559744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 20560222 - 20560330
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||  |||||||||||||||||    
T  20560222 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatatagctttcccatgctaa 20560321  T
Q  351 accttacct 359  Q
    |||| ||||    
T  20560322 acctcacct 20560330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 33139881 - 33139778
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||| || ||||||||||||||||||||||||    
T  33139881 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaaccaactttctcatggtggaaaaaaagtagctttcccatgctaa 33139782  T
Q  351 acct 354  Q
    ||||    
T  33139781 acct 33139778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 33140235 - 33140338
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||    
T  33140235 ctagtgatgagggagtatgataaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttcccatactaa 33140334  T
Q  351 acct 354  Q
    ||||    
T  33140335 acct 33140338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 4180279 - 4180387
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||| ||||| |||    
T  4180279 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggtcaaaaactaactttcccatggtgggaaaaatgtagcttttccatgttaa 4180378  T
Q  351 accttacct 359  Q
    |||| ||||    
T  4180379 acctcacct 4180387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 42901077 - 42901185
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||  ||||||||    
T  42901077 ctagtgatgagggagtatgataacaatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagctttttcatgctaa 42901176  T
Q  351 accttacct 359  Q
    |||| ||||    
T  42901177 acctcacct 42901185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 4179744 - 4179641
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||| ||| |||| ||||||||    
T  4179744 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggtcaaatactaactttcccatggtgggaaaaaaatagttttctcatgctaa 4179645  T
Q  351 acct 354  Q
    ||||    
T  4179644 acct 4179641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 40641111 - 40641214
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    |||||||  ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |    ||||||||| ||||||||||||||    
T  40641111 ctagtgataagggagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatagtaaaaaaaaagtaactttcccatgctaa 40641210  T
Q  351 acct 354  Q
    ||||    
T  40641211 acct 40641214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 263 - 354
Target Start/End: Complemental strand, 42900742 - 42900651
Alignment:
Q  263 gagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaacct 354  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |  ||||||||| |||| |||||||||||||    
T  42900742 gagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcccatggtgaaaaaaaagtaccttttccatgctaaacct 42900651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 30414288 - 30414208
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||    
T  30414288 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtgggaaaaa 30414208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 40640757 - 40640657
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||| ||||||| ||||||||||||||||||||||||| | ||||||||||||||||   | ||||||||||||  |||||||||||||    
T  40640757 ctagtgatgagggagaatgataatgatgtgttcttggtttgatttaatgattaaaaactaactttccc---gtgggaaaaaagtaattttcccatgctaa 40640661  T
Q  351 acct 354  Q
    ||||    
T  40640660 acct 40640657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 25137519 - 25137418
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||| ||| |||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  25137519 ctagtgatgagggagtatggtaaggatgtgttattgatttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 25137421  T
Q  350 aac 352  Q
    |||    
T  25137420 aac 25137418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 25137865 - 25137967
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttc-ttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgct 348  Q
    ||||||| ||||||||||| ||||||||||||| ||| |||||| ||||||| ||||||||| |||||||||| ||| ||||| ||| ||||||||||||    
T  25137865 ctagtgatgagggagtatggtaaggatgtgttctttgatttgatctaatggttaaaaactaattttcccatggtggg-aaaaattagtctttcccatgct 25137963  T
Q  349 aaac 352  Q
    ||||    
T  25137964 aaac 25137967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 35211996 - 35211940
Alignment:
Q  264 agtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccat 320  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||    
T  35211996 agtatgataagaatgtgttcttgatttgatttaatggtcaaaaactaacttttccat 35211940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 33686987 - 33686932
Alignment:
Q  297 atggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaac 352  Q
    ||||| |||||||||||||||||||| ||||||||   | ||||||||||||||||    
T  33686987 atggttaaaaactaactttcccatggtgggaaaaattaacctttcccatgctaaac 33686932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 29006411 - 29006374
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29006411 taatggttaaaaactaactttcccatggtgggaaaaaa 29006374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 29007183 - 29007220
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  29007183 taatggttaaaaactaactttcccatggtgggaaaaaa 29007220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 41224828 - 41224864
Alignment:
Q  296 aatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    |||||| |||||||||||||||||||| |||||||||    
T  41224828 aatggttaaaaactaactttcccatggtgggaaaaaa 41224864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 2821065 - 2820957
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  2821065 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgttaa 2820966  T
Q  351 accttacct 359  Q
    |||| ||||    
T  2820965 acctcacct 2820957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 12800411 - 12800514
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  12800411 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagttttcccatgctaa 12800510  T
Q  351 acct 354  Q
    ||||    
T  12800511 acct 12800514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 28371644 - 28371747
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28371644 ctagtgatgagggagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaa 28371743  T
Q  351 acct 354  Q
    ||||    
T  28371744 acct 28371747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 48594166 - 48594274
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  48594166 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaaagtagctttccaatgctaa 48594265  T
Q  351 accttacct 359  Q
    |||| ||||    
T  48594266 acctcacct 48594274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 48598777 - 48598885
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||||||||||| |||||||    
T  48598777 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatgatgggaaaaaagtagctttccaatgctaa 48598876  T
Q  351 accttacct 359  Q
    |||| ||||    
T  48598877 acctcacct 48598885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 2821430 - 2821533
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||||||||||| |||| ||| ||||    
T  2821430 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaattaactttcccatggtgggaaaaaagtagttttctcatactaa 2821529  T
Q  351 acct 354  Q
    ||||    
T  2821530 acct 2821533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 48153100 - 48153203
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||||||    
T  48153100 ctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatgatcaaaaactaactttcccatattgggaaaaaagtagctttcccatgctaa 48153199  T
Q  351 acct 354  Q
    ||||    
T  48153200 acct 48153203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 251 - 351
Target Start/End: Original strand, 33631031 - 33631131
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||    
T  33631031 ctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtagttttcccatgctaa 33631130  T
Q  351 a 351  Q
    |    
T  33631131 a 33631131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 259 - 359
Target Start/End: Complemental strand, 50164336 - 50164236
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaaccttacc 358  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| | ||||||||||||| ||||||||||||||||| |||    
T  50164336 gagggagtatgataaggatgtattcttggtttgatctaatggtcataaactaactttcccatagtgggaaaaaagtagttttcccatgctaaacctcacc 50164237  T
Q  359 t 359  Q
    |    
T  50164236 t 50164236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 12800096 - 12799993
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||| ||||    
T  12800096 ctagtgatgaggaagtatgataaggatgtgtttttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccatactaa 12799997  T
Q  351 acct 354  Q
    ||||    
T  12799996 acct 12799993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 251 - 363
Target Start/End: Complemental strand, 28371306 - 28371194
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||  |||||  ||||||||||| ||||||||| ||||    
T  28371306 ctagtgatgagagagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttttcatggtaggaaaaaagtaactttcccatactaa 28371207  T
Q  351 accttaccttcat 363  Q
    |||| ||||||||    
T  28371206 acctcaccttcat 28371194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 50164650 - 50164753
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| || ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||| || |||||||||| |||||||| ||||    
T  50164650 ctagtgatgaaggagtatgataaggatgtgttcttgatttgatctaatggtcaaaaactaactttcctatggtggaaaaaaagtagttttcccatactaa 50164749  T
Q  351 acct 354  Q
    ||||    
T  50164750 acct 50164753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 43756288 - 43756389
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||| ||| |||||||||||||    
T  43756288 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaactttcccatgg-tggaaaaaattagtctttcccatgcta 43756386  T
Q  350 aac 352  Q
    |||    
T  43756387 aac 43756389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 38328827 - 38328928
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||| || || ||||| ||| |||||||||||||    
T  38328827 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatgattaaaaactaactttcccat-gatgggaaaaattagtctttcccatgcta 38328925  T
Q  350 aac 352  Q
    |||    
T  38328926 aac 38328928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 43755948 - 43755855
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgctaaac 352  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| ||||||||||||||||    
T  43755948 gagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaac 43755855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 38469013 - 38468912
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||||||| ||| || ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  38469013 ctagtgatgagggagtatggtaaggatgtgttcttgatttaatataatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 38468915  T
Q  350 aac 352  Q
    |||    
T  38468914 aac 38468912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 38469226 - 38469327
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| || |||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||  |||||||| ||| |||||||||||||    
T  38469226 ctagtgatgatggagtatggtaaggatgtgttcttgatttgatctaatggttaaaaactaactttcccatgg-tggaaaaaattagcctttcccatgcta 38469324  T
Q  350 aac 352  Q
    |||    
T  38469325 aac 38469327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 295 - 359
Target Start/End: Original strand, 17151864 - 17151928
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaaccttacct 359  Q
    |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||    
T  17151864 taatggtcaaaaactaactttcccatggtggaaaaaaagtagctttcccatgctaaacctcacct 17151928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 33630543 - 33630476
Alignment:
Q  292 atttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaaccttacct 359  Q
    ||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||||    
T  33630543 atttaatggtcaaaaactaactttcccatggtggaaaataagtagctttcccatgctaaacctcacct 33630476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 251 - 321
Target Start/End: Complemental strand, 38328494 - 38328424
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatg 321  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||||||| |||||    
T  38328494 ctagtgatgagggagtatggtaaggatttgttcttggtttgatctaatggttaaaaactaacttttccatg 38328424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 264 - 354
Target Start/End: Original strand, 48589092 - 48589184
Alignment:
Q  264 agtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagg--gaaaaaagtagctttcccatgctaaacct 354  Q
    ||||||||||||||||||||||| |||||| |||| ||| |||||||| ||||||||||  |   |||||||||| |||||||||||||||||    
T  48589092 agtatgataaggatgtgttcttgatttgatctaatcgtcgaaaactaattttcccatggtagaaaaaaaaagtagttttcccatgctaaacct 48589184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 298 - 361
Target Start/End: Complemental strand, 17151062 - 17150999
Alignment:
Q  298 tggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaaccttaccttc 361  Q
    |||||||||| |||||||||||||| ||||||||     |||||||||||||||||| ||||||    
T  17151062 tggtcaaaaaataactttcccatggtgggaaaaaccagcctttcccatgctaaacctcaccttc 17150999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 251 - 359
Target Start/End: Complemental strand, 14197766 - 14197658
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  14197766 ctagtgatgagggagtatgataaggatgtgttcttgctttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtaactttcccatgctaa 14197667  T
Q  351 accttacct 359  Q
    |||| ||||    
T  14197666 acctcacct 14197658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 37657954 - 37657851
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||    
T  37657954 ctagtgatgagggagtatgataaagatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtagaaaaaaagtagctttcccatgctaa 37657855  T
Q  351 acct 354  Q
    ||||    
T  37657854 acct 37657851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 39439865 - 39439762
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |||  ||||||||||||||||| |||| ||||    
T  39439865 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatagtcaaaaactaacttttctatgatgggaaaaaagtagcttttccatactaa 39439766  T
Q  351 acct 354  Q
    ||||    
T  39439765 acct 39439762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 39440540 - 39440642
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||  |||||||||||| |||| ||||||||    
T  39440540 ctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatgg-tggaaaaaagtagttttctcatgctaa 39440638  T
Q  351 acct 354  Q
    ||||    
T  39440639 acct 39440642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 41714710 - 41714607
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||  ||||  |  |||||| |||||||||||||||||    
T  41714710 ctagtgatgagggattatgataaggatgtgttcttggtttgatctaatgatcaaaaactaactttttcatgatgaaaaaaaaatagctttcccatgctaa 41714611  T
Q  351 acct 354  Q
    ||||    
T  41714610 acct 41714607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 30846123 - 30846022
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| |||| ||| ||||| ||| |||||||||||||    
T  30846123 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtggg-aaaaattagtctttcccatgcta 30846025  T
Q  350 aac 352  Q
    |||    
T  30846024 aac 30846022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 30846437 - 30846538
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||| ||||||| ||||||||| ||||||||||  |||||||| ||| |||||||||||||    
T  30846437 ctagtgatgagggagtatggtaaggatatgttcttggtttgatctaatggttaaaaactaattttcccatgg-tggaaaaaattagcctttcccatgcta 30846535  T
Q  350 aac 352  Q
    |||    
T  30846536 aac 30846538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 299 - 354
Target Start/End: Original strand, 31408164 - 31408219
Alignment:
Q  299 ggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaacct 354  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31408164 ggtcaaaaactaactttcccatggtgggaaaaaagtagctttcccatgctaaacct 31408219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 251 - 315
Target Start/End: Original strand, 41715208 - 41715272
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 315  Q
    ||||||| || |||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  41715208 ctagtgatgatggagtatgataaggatatgttcttggtttgatctaatggtcaaaaactaacttt 41715272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 37658496 - 37658549
Alignment:
Q  262 ggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt 315  Q
    |||||||| |||||| |||||||| ||||||| ||||||| |||||||||||||    
T  37658496 ggagtatggtaaggacgtgttcttcgtttgatctaatggtaaaaaactaacttt 37658549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 42573646 - 42573606
Alignment:
Q  292 atttaatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    |||||||||||||||||||| |||| ||||| |||||||||    
T  42573646 atttaatggtcaaaaactaattttctcatggtgggaaaaaa 42573606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 5620810 - 5620913
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||||||||||    
T  5620810 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaattttcccatggtgggaaaaaagtaactttcccatgctaa 5620909  T
Q  351 acct 354  Q
    ||||    
T  5620910 acct 5620913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 12 - 161
Target Start/End: Complemental strand, 34599039 - 34598892
Alignment:
Q  12 ggggaataacaacaaatctaagaaaaacaagagaggaaaaaagggtaagaagtgaaaattgtcaggtgttttgtacatgcaaatgctgtagtaatttttg 111  Q
    |||||| || ||||| || |||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||  ||||    
T  34599039 ggggaagaaaaacaagtccaagaaaaacaagggaggaaaaaagggtaagaagtgaaaattgtcgggtcttttgtacatgcaaatgctgtagtaa--tttg 34598942  T
Q  112 tgctttcacttcaaactgtctggttatggtatttcccgactgtggaatct 161  Q
    || || ||||||||||| |||| ||||||||| ||| || | ||||||||    
T  34598941 tgtttacacttcaaactatctgattatggtatatcctgattttggaatct 34598892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 42655681 - 42655782
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||| ||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||| |||||| ||||||||||||||||||||    
T  42655681 ctagtgatgaggaagtatgataaggatgtgttattggtttgatctaatggtcaaaaactaatttttccatggtgggaaagaagtagctttcccatgctaa 42655780  T
Q  351 ac 352  Q
    ||    
T  42655781 ac 42655782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 251 - 362
Target Start/End: Complemental strand, 3595884 - 3595773
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  3595884 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 3595786  T
Q  350 aaccttaccttca 362  Q
    ||| | |||||||    
T  3595785 aacttcaccttca 3595773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 251 - 339
Target Start/End: Original strand, 16996970 - 16997058
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctt 339  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||  |||||||||||||||    
T  16996970 ctagtgatgagggagtatggtaaggatgtgttcttcgtttgatctaatggtcaaaaactaactttcccatggtaggaaaaaagtagctt 16997058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 8321328 - 8321429
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  8321328 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 8321426  T
Q  350 aac 352  Q
    |||    
T  8321427 aac 8321429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 12330603 - 12330704
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  12330603 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 12330701  T
Q  350 aac 352  Q
    |||    
T  12330702 aac 12330704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 259 - 352
Target Start/End: Complemental strand, 7858426 - 7858333
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgctaaac 352  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| ||||||||||||||||    
T  7858426 gagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgctaaac 7858333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 12330255 - 12330154
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||||| ||| ||||| ||| |||||||||||||    
T  12330255 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaattaactttcccatggtggg-aaaaattagcctttcccatgcta 12330157  T
Q  350 aac 352  Q
    |||    
T  12330156 aac 12330154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 24027627 - 24027707
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||||    
T  24027627 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 24027707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 7858760 - 7858831
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatgg 322  Q
    ||||||| ||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  7858760 ctagtgatgagggagtatggtaaggatgtattcttggtttgatttaatggttaaaaactaactttcccatgg 7858831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 3596234 - 3596335
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||  ||||||||||||||||||||||| ||||||| ||||||||| |||||||||| ||| ||||| ||| |||||||||||||    
T  3596234 ctagtgatgagggagtatagtaaggatgtgttcttggtttgatctaatggttaaaaactaattttcccatggtggg-aaaaattagtctttcccatgcta 3596332  T
Q  350 aac 352  Q
    |||    
T  3596333 aac 3596335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 8320982 - 8320881
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||| ||||||| || ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  8320982 ctagtgatgagggagtatggtaaggatgtgttattggtttaatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 8320884  T
Q  350 aac 352  Q
    |||    
T  8320883 aac 8320881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 24027294 - 24027193
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||| || ||||||||||||| |||||| ||| ||||| ||| |||||||||||||    
T  24027294 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaacttttccatggtggg-aaaaattagcctttcccatgcta 24027196  T
Q  350 aac 352  Q
    |||    
T  24027195 aac 24027193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 29759704 - 29759603
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| | ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||| |  |||||||| ||| |||||||||||||    
T  29759704 ctagtgatgggggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatag-tggaaaaaattagtctttcccatgcta 29759606  T
Q  350 aac 352  Q
    |||    
T  29759605 aac 29759603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 294 - 352
Target Start/End: Complemental strand, 31078520 - 31078462
Alignment:
Q  294 ttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgctaaac 352  Q
    |||||||| ||||||||||||||||||||  |||||||| ||| ||||||||||||||||    
T  31078520 ttaatggttaaaaactaactttcccatgg-tggaaaaaattagtctttcccatgctaaac 31078462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 3705444 - 3705341
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  3705444 ctagtgatgagggagtatgatatggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaagtagctttcctatgctaa 3705345  T
Q  351 acct 354  Q
    ||||    
T  3705344 acct 3705341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 16681673 - 16681570
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||  |||||| || |||||||||||||||||    
T  16681673 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggccaaaaactaactttcccatgatgggaaataactagctttcccatgctaa 16681574  T
Q  351 acct 354  Q
    ||||    
T  16681573 acct 16681570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 3705765 - 3705875
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagg--gaaaaaagtagctttcccatgct 348  Q
    ||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||   ||||||||||  ||||||||||    
T  3705765 ctagtgatgaaggagtatgataaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtggaaaaaaaaagtagtcttcccatgct 3705864  T
Q  349 aaaccttacct 359  Q
    |||||| ||||    
T  3705865 aaacctcacct 3705875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 30899497 - 30899396
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  30899497 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 30899399  T
Q  350 aac 352  Q
    |||    
T  30899398 aac 30899396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 251 - 363
Target Start/End: Original strand, 15561981 - 15562093
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  15561981 ctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 15562079  T
Q  350 aaccttaccttcat 363  Q
    ||| | ||||||||    
T  15562080 aacttcaccttcat 15562093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 6609984 - 6610085
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||||||||||| || ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  6609984 ctagtgatgagggagtatggtaaggatgtgttcttggtttaatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 6610082  T
Q  350 aac 352  Q
    |||    
T  6610083 aac 6610085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 7994522 - 7994615
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgctaaac 352  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||| ||||||||||||||||    
T  7994522 gagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgg-tggaaaaaattagcctttcccatgctaaac 7994615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 16903838 - 16903939
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  16903838 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 16903936  T
Q  350 aac 352  Q
    |||    
T  16903937 aac 16903939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 16992332 - 16992434
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||| | | ||||| ||| |||||||||||||    
T  16992332 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttcccatggtgaggaaaaattagcctttcccatgcta 16992431  T
Q  350 aac 352  Q
    |||    
T  16992432 aac 16992434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 7994162 - 7994082
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||  ||||||||    
T  7994162 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgatgggaaaaa 7994082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 15561648 - 15561547
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||| ||||||| ||||||| ||||||||||||||| |||| ||| ||||| ||| |||||||||||||    
T  15561648 ctagtgatgagggagtatggtaaggatgtgttcttagtttgatctaatggttaaaaactaactttccaatggtggg-aaaaattagtctttcccatgcta 15561550  T
Q  350 aac 352  Q
    |||    
T  15561549 aac 15561547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 37996532 - 37996625
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgctaaac 352  Q
    |||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||| || || ||||| ||| ||||||||||||||||    
T  37996532 gagggagtatgataaggatgtgttcttgatttgatctaatggttaaaaactaactttcccat-gatgggaaaaattagcctttcccatgctaaac 37996625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 6609658 - 6609557
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| |||||||||||| ||||||| || ||||||| ||||||||||||| |||||| ||| ||||| ||| |||||||||||||    
T  6609658 ctagtgaagagggagtatggtaaggatgtgttgttggtttcatctaatggttaaaaactaacttttccatggtggg-aaaaattagcctttcccatgcta 6609560  T
Q  350 aac 352  Q
    |||    
T  6609559 aac 6609557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 251 - 331
Target Start/End: Complemental strand, 16903504 - 16903425
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||| |||||| ||||||||    
T  16903504 ctagtgatgagggagtatggtaaggatgtgttcttg-tttgatctaatggttaaaaactaacttttccatggtgggaaaaa 16903425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 259 - 352
Target Start/End: Original strand, 30899850 - 30899943
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgctaaac 352  Q
    ||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||  ||||| ||| ||||| ||| ||||||||||||||||    
T  30899850 gagggagtatggtaaggatgtgttcttggtttgatctaatagttaaaaactaactttttcatggtggg-aaaaattagcctttcccatgctaaac 30899943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 341
Target Start/End: Original strand, 16682215 - 16682298
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaacttt-cccatggagggaaaaaagtagctttc 341  Q
    ||||||||||| ||  ||||||||||| |||||||||||| |||||||||||||||| || |||  || |||||||||||||||    
T  16682215 gagggagtatggtatagatgtgttcttcgtttgatttaatagtcaaaaactaactttgccaatgtgggaaaaaaagtagctttc 16682298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 8e-38; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 19860813 - 19860921
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||||||||||||    
T  19860813 ctagtgatgagggagtatgaaaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccacggtgggaaaaaagtaggtttcccatgctaa 19860912  T
Q  351 accttacct 359  Q
    |||| ||||    
T  19860913 acctcacct 19860921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 19860437 - 19860334
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| ||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  19860437 ctagtgatgagggagtatggtaagtatgtgttcttggtttgatctaatggtcaaaaactaactttcccatggtgggaaaaaaatagctttcccatgctaa 19860338  T
Q  351 acct 354  Q
    ||||    
T  19860337 acct 19860334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 20175077 - 20174976
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  20175077 ctagtgatgagggagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 20174979  T
Q  350 aac 352  Q
    |||    
T  20174978 aac 20174976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 354
Target Start/End: Complemental strand, 52532230 - 52532127
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||| |||| |||| |||||||||||||| |  ||||||||||| ||||||||||||| ||||||||||||| |||||||||||||    
T  52532230 ctagtgatgagggagtataataaagatgcgttcttggtttgatctgctggtcaaaaacaaactttcccatggtgggaaaaaagtagttttcccatgctaa 52532131  T
Q  351 acct 354  Q
    ||||    
T  52532130 acct 52532127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 5235481 - 5235380
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  5235481 ctagtgatgagtgagtatgataaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 5235383  T
Q  350 aac 352  Q
    |||    
T  5235382 aac 5235380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 6934443 - 6934544
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||  |||||||| ||| |||||||||||||    
T  6934443 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatgg-tggaaaaaattagtctttcccatgcta 6934541  T
Q  350 aac 352  Q
    |||    
T  6934542 aac 6934544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 259 - 360
Target Start/End: Original strand, 52532379 - 52532480
Alignment:
Q  259 gagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaaaccttacc 358  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||||||| | || ||||||||||||||||| ||||| ||||||| |||    
T  52532379 gagggagtataacaaggatgtgttcttggtttgatctactggtcaaaaactaactttccaacggtgggaaaaaagtagcttttccatgttaaacctcacc 52532478  T
Q  359 tt 360  Q
    ||    
T  52532479 tt 52532480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 6933928 - 6933827
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||| |||| || |||||||| ||| |||||||||||||    
T  6933928 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaacttttccat-gatggaaaaaattagtctttcccatgcta 6933830  T
Q  350 aac 352  Q
    |||    
T  6933829 aac 6933827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 5259269 - 5259377
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| || |||||||||||| |||||||||||| |||||| |||||||| ||||||||||||||||||  |  |||||||||| |||| ||||||||    
T  5259269 ctagtgatgaaggagtatgataaagatgtgttcttgatttgatctaatggtcgaaaactaactttcccatgatgaaaaaaaagtagttttctcatgctaa 5259368  T
Q  351 accttacct 359  Q
    |||| ||||    
T  5259369 acctcacct 5259377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 5235827 - 5235907
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||| ||||  |||||||    
T  5235827 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcctatggtaggaaaaa 5235907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 251 - 359
Target Start/End: Original strand, 30213856 - 30213964
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||||||||  || | ||||||||||||| |||||||||||||||||||||  |||||  | |||||||||| ||||||||| |||    
T  30213856 ctagtgatgagggagtatgataaaaatatattcttggtttgatctaatggtcaaaaactaactttttcatggtagaaaaaaagtagttttcccatgataa 30213955  T
Q  351 accttacct 359  Q
    |||| ||||    
T  30213956 acctcacct 30213964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 46764319 - 46764279
Alignment:
Q  292 atttaatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  46764319 atttaatggtcaaaaactaactttcccatggtgggaaaaaa 46764279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 295 - 344
Target Start/End: Original strand, 25655623 - 25655673
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttccca 344  Q
    |||||||||||||||||||||||||||| ||||||||| ||| ||||||||    
T  25655623 taatggtcaaaaactaactttcccatggtgggaaaaaactagtctttccca 25655673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 11680340 - 11680303
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    |||||||||||||||||||||||||||| |||||||||    
T  11680340 taatggtcaaaaactaactttcccatggtgggaaaaaa 11680303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 11688619 - 11688582
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    |||||||||||||||||||||||||||| |||||||||    
T  11688619 taatggtcaaaaactaactttcccatggtgggaaaaaa 11688582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 332
Target Start/End: Complemental strand, 31910621 - 31910581
Alignment:
Q  292 atttaatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    |||||||||| |||||||||||||||||||| |||||||||    
T  31910621 atttaatggttaaaaactaactttcccatggtgggaaaaaa 31910581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 306
Target Start/End: Original strand, 20175366 - 20175421
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaa 306  Q
    ||||||| ||||||| ||| |||||||||||| |||||||||| ||||||| ||||    
T  20175366 ctagtgatgagggagcatggtaaggatgtgttattggtttgatctaatggttaaaa 20175421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 295 - 337
Target Start/End: Original strand, 12590187 - 12590229
Alignment:
Q  295 taatggtcaaaaactaactttcccatggagggaaaaaagtagc 337  Q
    |||||||||||||||||||||||||||| || |||||| ||||    
T  12590187 taatggtcaaaaactaactttcccatggtggaaaaaaactagc 12590229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 251 - 354
Target Start/End: Original strand, 42873 - 42975
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtagctttcccatgctaa 350  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||   ||||  |||||||||||| |||| ||||||||    
T  42873 ctagtgatgagggagtattataaggatgtgttcttggtttgatttaatggtcaaaaactaacttttttatgg-tggaaaaaagtagttttctcatgctaa 42971  T
Q  351 acct 354  Q
    ||||    
T  42972 acct 42975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 4240 - 4139
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||| ||||| ||| |||||||||||||    
T  4240 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaatggttaaaaactaactttcccatggtggg-aaaaattagcctttcccatgcta 4142  T
Q  350 aac 352  Q
    |||    
T  4141 aac 4139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 251 - 352
Target Start/End: Original strand, 4565 - 4666
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||| || |||||||| ||| |||||||||||||    
T  4565 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatctaattgttaaaaactaactttcccat-gatggaaaaaattagtctttcccatgcta 4663  T
Q  350 aac 352  Q
    |||    
T  4664 aac 4666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 251 - 352
Target Start/End: Complemental strand, 61681 - 61580
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaaagtag-ctttcccatgcta 349  Q
    ||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| || || ||||| ||| |||||||||||||    
T  61681 ctagtgatgagggagtatgagaaggatgtgttcttggtttgatctaatggtcaaaaactaactttcccat-gatgggaaaaattagcctttcccatgcta 61583  T
Q  350 aac 352  Q
    |||    
T  61582 aac 61580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 312
Target Start/End: Original strand, 62028 - 62089
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaac 312  Q
    ||||||| ||||||||||| |||||||||| |||||||||||| ||||| | ||||||||||    
T  62028 ctagtgatgagggagtatggtaaggatgtgatcttggtttgatctaatgctaaaaaactaac 62089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 251 - 331
Target Start/End: Original strand, 202224 - 202304
Alignment:
Q  251 ctagtgacgagggagtatgataaggatgtgttcttggtttgatttaatggtcaaaaactaactttcccatggagggaaaaa 331  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||    
T  202224 ctagtgatgagggagtatggtaaggatgtgttcttggtttgatttaatggttaaaaactaacttttccatggtgggaaaaa 202304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 22203 - 22269
Alignment:
Q  287 gtttgatttaatggtcaaaaactaactttcccatggagg-gaaaaaagtagctttcccatgctaaac 352  Q
    ||||||| |||||||||||||| || |||||||||| ||  ||||||||||||||||||||||||||    
T  22203 gtttgatctaatggtcaaaaacaaattttcccatggtggaaaaaaaagtagctttcccatgctaaac 22269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 25993 - 26075
Alignment:
Q  79 gttttgtacatgcaaatgctgtagtaatttttgtgctttcacttcaaactgtctggttatggtatttcccgactgtggaatct 161  Q
    ||||||| ||| |||||| ||||||||| ||| || ||  |||||||||||| ||||| |||||||||| ||||||| |||||    
T  25993 gttttgttcattcaaatgttgtagtaatgtttttgtttaaacttcaaactgtttggttttggtatttcctgactgtgaaatct 26075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 296 - 332
Target Start/End: Complemental strand, 17402 - 17366
Alignment:
Q  296 aatggtcaaaaactaactttcccatggagggaaaaaa 332  Q
    |||||| |||||||||||||||||||| |||||||||    
T  17402 aatggttaaaaactaactttcccatggtgggaaaaaa 17366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University