View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14432_low_12 (Length: 230)
Name: NF14432_low_12
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14432_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 35072254 - 35072041
Alignment:
| Q |
1 |
gataccaggcaacaacatcccttttgagaattccccattctctacttcaatccaagaattttcacgagaaaatccaattttcctcaacaaccagattgat |
100 |
Q |
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| T |
35072254 |
gataccaggcaacaacagcccttttgagaattccccattctctacttcaatccaagaattttcacgagaaaatccaattttcctcaacaaccagattgat |
35072155 |
T |
|
| Q |
101 |
tggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072154 |
tggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttcaga |
35072055 |
T |
|
| Q |
201 |
taacaggagagagg |
214 |
Q |
| |
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|||||||||||||| |
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| T |
35072054 |
taacaggagagagg |
35072041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Complemental strand, 35073001 - 35072892
Alignment:
| Q |
94 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
193 |
Q |
| |
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||||||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| ||||||||| || || |
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| T |
35073001 |
gattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggtt |
35072902 |
T |
|
| Q |
194 |
cttcagataa |
203 |
Q |
| |
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|||||||||| |
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| T |
35072901 |
cttcagataa |
35072892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 35106859 - 35106968
Alignment:
| Q |
94 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
193 |
Q |
| |
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| T |
35106859 |
gattgattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggtt |
35106958 |
T |
|
| Q |
194 |
cttcagataa |
203 |
Q |
| |
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|||||||||| |
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|
| T |
35106959 |
cttcagataa |
35106968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 36296774 - 36296654
Alignment:
| Q |
94 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
193 |
Q |
| |
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||||||||||||||| || |||||||| || || || ||||||||| | || || ||||| || || |||||||| ||||| ||||||||| ||||| |
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| T |
36296774 |
gattgattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagtt |
36296675 |
T |
|
| Q |
194 |
cttcagataacaggagagagg |
214 |
Q |
| |
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|||||||| | ||||||||| |
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| T |
36296674 |
cttcagattagtggagagagg |
36296654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 94 - 214
Target Start/End: Complemental strand, 24014500 - 24014380
Alignment:
| Q |
94 |
gattgattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtg |
193 |
Q |
| |
|
||||||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || ||||||||||| ||||| |||||| || || || |
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| T |
24014500 |
gattgattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggtt |
24014401 |
T |
|
| Q |
194 |
cttcagataacaggagagagg |
214 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
24014400 |
cttcagataagcggagagagg |
24014380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 203
Target Start/End: Complemental strand, 24041053 - 24040948
Alignment:
| Q |
98 |
gattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttc |
197 |
Q |
| |
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||||||||||| || |||||||| ||||| ||||| |||||| | || || ||||| || || |||||||| ||||| ||||||||| || || |||| |
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| T |
24041053 |
gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttc |
24040954 |
T |
|
| Q |
198 |
agataa |
203 |
Q |
| |
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|||||| |
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|
| T |
24040953 |
agataa |
24040948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 3123082 - 3123163
Alignment:
| Q |
104 |
aaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatg |
185 |
Q |
| |
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|||||||||| |||||| ||||| |||||||||||| | |||||| |||| || || || ||||| ||||| ||||||||| |
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| T |
3123082 |
aaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtgaaggttgaaattgaagatg |
3123163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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