View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14432_low_14 (Length: 201)
Name: NF14432_low_14
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14432_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 3386605 - 3386767
Alignment:
| Q |
11 |
aaaatatacaaatggatacaatattttagctatatatgtaacatccaatggtgaacattgaattagcatttcaccatttcttgtatactccctccaatct |
110 |
Q |
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| T |
3386605 |
aaaatatacaaatgtatacaatattttagctatatatgtaacatccaatggtgaacattgaattagcatttcaccatttcttgtatact-cctccaatct |
3386703 |
T |
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| Q |
111 |
catacgtaagtaaataatctatttttaagtttaatgaataattaattaatatatttgatttatg |
174 |
Q |
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| T |
3386704 |
catacgtaagtaaatcatctatttttaagtttaatgaataattaattaatatatttgatttatg |
3386767 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 30112487 - 30112426
Alignment:
| Q |
95 |
atactccctccaatctcatacgtaagtaaataatctatttttaagtttaatgaataattaat |
156 |
Q |
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| T |
30112487 |
atacttcctccaatctcatatgtaagaaaatattcttttgttaagttcattgaataattaat |
30112426 |
T |
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