View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14432_low_4 (Length: 517)
Name: NF14432_low_4
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14432_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 5 - 268
Target Start/End: Original strand, 38981236 - 38981499
Alignment:
| Q |
5 |
atatttatatttagattattatatgttttgtacaacttcaatatatgttgcagcatattatgtgcctttaatcatactagattttaggacatatatataa |
104 |
Q |
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| T |
38981236 |
atatttatatttatattattatatgttttgtacaacttcaatatatgttgcagcatattatgtgcctttaatcatactagattttaggacatatatataa |
38981335 |
T |
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| Q |
105 |
tttttctatttttgaagagttgaattttactacaattgttataagcaatttgatatatatgccacaaatggaatttaaatttgaactttgaagctacatt |
204 |
Q |
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| T |
38981336 |
tttttctatttttgaagagttgaattttactacaattgttataagcaatttgatatatatgccacaaatggaatttaaatttgaactttgaagctacatt |
38981435 |
T |
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| Q |
205 |
tgtggcaagtagtaatttccatacatagtgatcgatgtggatgacattatttggaatgattccc |
268 |
Q |
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| T |
38981436 |
tgtggcaagtagtcatttccatacatagtgatcgatgtggataacattatttggaatgattccc |
38981499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 296 - 500
Target Start/End: Original strand, 38981527 - 38981716
Alignment:
| Q |
296 |
cgatgtgattatttgttcatatctacaaaagaggagagtatattgtgctcttttcttatcactt--tctctttttaatggccacttagagtgttgtcctc |
393 |
Q |
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| T |
38981527 |
cgatgtgattatttgttcatatctacaaaagaggagagtatattgtgctcttttcttatcactttctctctttttaatggccacttagagtgttgtcctc |
38981626 |
T |
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| Q |
394 |
tccaaatgtattttgtggggaaagagaatgatagaggccttaaagcataatatatgatgatcatactaataagttctgtttcataaactgacaagcttta |
493 |
Q |
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| T |
38981627 |
tccaaatgtattttgttaccaaaaa---------------aaaagcataatatatgatgatcatactaataagttctgtttc--aaactgacaagcttta |
38981709 |
T |
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