View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14432_low_6 (Length: 420)
Name: NF14432_low_6
Description: NF14432
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14432_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 383
Target Start/End: Complemental strand, 32977871 - 32977486
Alignment:
| Q |
1 |
cattgcattatttaaaggatacttttgaggatgtgcttgttacctactaaagaatttggtttgagagggctaacgtaca---ttatttttaagaagttaa |
97 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | || || ||||||||||| ||| |
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| T |
32977871 |
cattgcattatttaaaggatacttttgaggatgtgcttgttacctactaaagaatttggtttgagagggataacattcaattttttttttaagaagctaa |
32977772 |
T |
|
| Q |
98 |
attaactcatctaaattaatatcgaagataattgaaccttggatcttgtgaaagagcacactgcaaggtcgctaaccaataccaccaattcaacccaagt |
197 |
Q |
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||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32977771 |
attaattcatctaaattaatattgaagataattgaaccttggatcttgtgaaagagcacactgcaaggtcgctaaccaataccaccagttcaacccaagt |
32977672 |
T |
|
| Q |
198 |
gggttgagggctaacatacatattgcaaacaaaagaatttaattaagggaaaagataactagtattcatgtgacactatttaagaaaaggaccactttgt |
297 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32977671 |
gggttgagggctaacatacatattgcaaacaaaagaatttaattaagggaaatgctaactagtattcatgtgacactatttaagaaaaggaccgctttgt |
32977572 |
T |
|
| Q |
298 |
tgcagtcggcaaaacaacgcagtcatgttttggcgactgttcgatttgattagagctcaatatttgaagaattaaactctaaatat |
383 |
Q |
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|||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
32977571 |
tgcagtcggcaaaacaacacagtcatgtttcgacgactgttcgatctgattagagctcaatattttaagaattaaacattaaatat |
32977486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 83 - 133
Target Start/End: Original strand, 40951400 - 40951450
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaattaatatcgaagataattgaa |
133 |
Q |
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| T |
40951400 |
tttttaagaaattaaattaattcatctaaattagtatcgaagataattgaa |
40951450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Original strand, 19749233 - 19749284
Alignment:
| Q |
85 |
tttaagaagttaaattaactcatctaaattaatatcgaagataattgaacct |
136 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| ||| |||||| |
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|
| T |
19749233 |
tttaagaagttaaattaaatcatctaaattgatatcgaagagaatcgaacct |
19749284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 85 - 136
Target Start/End: Complemental strand, 19790573 - 19790522
Alignment:
| Q |
85 |
tttaagaagttaaattaactcatctaaattaatatcgaagataattgaacct |
136 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||||| ||| |||||| |
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|
| T |
19790573 |
tttaagaagttaaattaaatcatctaaattgatatcgaagagaatcgaacct |
19790522 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 20286992 - 20286959
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaattaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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|
| T |
20286992 |
tttttaagaagttaaattaactcatccaaattaa |
20286959 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 83 - 119
Target Start/End: Original strand, 12847469 - 12847505
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaattaatat |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |||| |
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|
| T |
12847469 |
tttttaagaagttaaattaactcacctaaattgatat |
12847505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 30468933 - 30468985
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaattaatatcgaagataattgaacc |
135 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| ||| |||||||||||||| |
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| T |
30468933 |
tttttaagaagttaaattaacccattcaaattaacatcaaagataattgaacc |
30468985 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 45271913 - 45271957
Alignment:
| Q |
375 |
tctaaatatgagcaaatagtaggacatacatttagctaccagtat |
419 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
45271913 |
tctaaatatgatcaaatagtattacatacatttagctaccagtat |
45271957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 2514896 - 2514929
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaattaa |
116 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
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|
| T |
2514896 |
tttttaagaagttaaattaacccatctaaattaa |
2514929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 26922562 - 26922509
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaattaatatcgaagataattgaacct |
136 |
Q |
| |
|
||||||||||||||||||| |||| ||||||| ||| |||||||||| ||||| |
|
|
| T |
26922562 |
tttttaagaagttaaattagctcacctaaattgatacagaagataattaaacct |
26922509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 6948034 - 6948065
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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| T |
6948034 |
tttttaagaagttaaattaactcatctaaatt |
6948065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 32703898 - 32703943
Alignment:
| Q |
84 |
ttttaagaagttaaattaactcatctaaattaatatcgaagataat |
129 |
Q |
| |
|
||||||||||| ||||||||||||| |||| |||||| |||||||| |
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|
| T |
32703898 |
ttttaagaagtcaaattaactcatcgaaatgaatatcaaagataat |
32703943 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 33328280 - 33328325
Alignment:
| Q |
91 |
aagttaaattaactcatctaaattaatatcgaagataattgaacct |
136 |
Q |
| |
|
|||||||| |||| ||||||||||| ||||||||||||| |||||| |
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|
| T |
33328280 |
aagttaaactaacccatctaaattattatcgaagataatcgaacct |
33328325 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 17137550 - 17137595
Alignment:
| Q |
83 |
tttttaagaagttaaattaactcatctaaattaatatcgaagataa |
128 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| | ||||||||||| |
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|
| T |
17137550 |
tttttaagaagttaaattaacttacctaaattgacatcgaagataa |
17137595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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